Created temporary directory: /tmp/pip-ephem-wheel-cache-_4m94rdq
Created temporary directory: /tmp/pip-req-tracker-hi690for
Created requirements tracker '/tmp/pip-req-tracker-hi690for'
Created temporary directory: /tmp/pip-wheel-dzdta4tb
Collecting pele-platform==1.4.0
  1 location(s) to search for versions of pele-platform:
  * https://pypi.org/simple/pele-platform/
  Getting page https://pypi.org/simple/pele-platform/
  Analyzing links from page https://pypi.org/simple/pele-platform/
    Found link https://files.pythonhosted.org/packages/f0/ac/9497572d7da4e501c8dddc3be3fa338744dbc27b67eb09275b8375fae2fd/pele_platform-1.0.0.1.tar.gz#sha256=e3c8bde654fe3d249714c4ddb1d3471944752f6840a6bcf4b399a3466931b838 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.1
    Found link https://files.pythonhosted.org/packages/79/a0/d1b4b9269c3fe9dd2edc878a2dec9d3f4e7701cc932272169f44a025c2a9/pele_platform-1.0.0.2.tar.gz#sha256=919f487c943e6e71a8d82e56dac3051605ffdc6a680d168b5233cea95c9e4701 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.2
    Found link https://files.pythonhosted.org/packages/a3/56/3cc9eb3b0ecf0943c4f4eb5b0729cd54906290f84dc4cfb230ad69ce99c6/pele_platform-1.0.0.3.tar.gz#sha256=ea4f3df0aeb65812e72eb9b24605146a7afeeb7f89ce7f769058c2e894654239 (from https://pypi.org/simple/pele-platform/), version: 1.0.0.3
    Found link https://files.pythonhosted.org/packages/d0/6d/1ac79163749b10c7f694dde1db24063d4e2f57bcf365db1b8cfa1b9f7f57/pele_platform-1.1.0.tar.gz#sha256=25a644fc27c0c364bfece9addd278a74a5a7ea5f4ab40b31fa8cd961e7485a65 (from https://pypi.org/simple/pele-platform/), version: 1.1.0
    Found link https://files.pythonhosted.org/packages/fd/15/306ea35b1d4be507caf1613d05fc16c076f070c2a16e6283a331695fcb5e/pele_platform-1.2.0.tar.gz#sha256=2967a976bafc47884ca49864ca87d40d87aa50c2fc57900c1f0517e84e789153 (from https://pypi.org/simple/pele-platform/), version: 1.2.0
    Found link https://files.pythonhosted.org/packages/74/98/cf2442f668f8ad6be1838c3ce7b87a409eee7448a1d7d033862ad0bda36c/pele_platform-1.2.1.tar.gz#sha256=5d30d563960934362ac79eb7a24b8f4b831076dba29bbb498901a0b0a1dca367 (from https://pypi.org/simple/pele-platform/), version: 1.2.1
    Found link https://files.pythonhosted.org/packages/1a/78/29b2eb73308b595668a9c22abd93ac88f82c49ebc6b004f332a774166391/pele_platform-1.2.2.tar.gz#sha256=00f579740db5455cea04c82e86b87c8f53045496ba61d9f4e96436f1d0cdfb08 (from https://pypi.org/simple/pele-platform/), version: 1.2.2
    Found link https://files.pythonhosted.org/packages/fb/6b/85f262d33a080377ea5202d5779c9402c23aaefc4e1b04bb94d9432aad42/pele_platform-1.2.3.tar.gz#sha256=18713b6811d7689accb54dde5429aa5225dcb8e520164fd7b4037453c63f74d9 (from https://pypi.org/simple/pele-platform/), version: 1.2.3
    Found link https://files.pythonhosted.org/packages/d5/15/707e6b89f0ee479d173ef2fe6a41af1ff9d91dd86e45067da5cee56761d9/pele_platform-1.3.0.tar.gz#sha256=fb7fb5dd59f9e3a76d371be6aa0b013209752c464862bf944de6b2a2903424a9 (from https://pypi.org/simple/pele-platform/), version: 1.3.0
    Found link https://files.pythonhosted.org/packages/7c/b0/4fda3001d5f13010bc2005e335f799f24d2204fc700a847e28091b57fabb/pele_platform-1.3.1.tar.gz#sha256=c6c0ac764ae30ce8a0650cdf0fc686fd733cb6b11fc15e6cccd5659166be3b33 (from https://pypi.org/simple/pele-platform/), version: 1.3.1
    Found link https://files.pythonhosted.org/packages/34/21/2f68d91d200432e0feb4662f6ba5538817335d86df60688e3a6f050dd21b/pele_platform-1.3.2.tar.gz#sha256=14c6e236347a1101f5de04bc25a32f302904bdb46326fb151c14e930a28d7a48 (from https://pypi.org/simple/pele-platform/), version: 1.3.2
    Found link https://files.pythonhosted.org/packages/63/a6/ad0bc781b4089093fd8aca4d75d237e0c0ae9d1f6b7e4b86a733f5a91b10/pele_platform-1.3.3.tar.gz#sha256=9e9e49d359bde42485b1c2d23b8a80c3de43064a672c260d18b9f10b55ee666e (from https://pypi.org/simple/pele-platform/), version: 1.3.3
    Found link https://files.pythonhosted.org/packages/e7/6a/4d8e75e0dbff74b22c76f4640a72798acfe6f55e35dcf0e9080dc8f36857/pele_platform-1.3.4.tar.gz#sha256=b8f7a2caac267df0381e8a3d73ddfeaec60cccc22336aa76178dbf3d2b2e880b (from https://pypi.org/simple/pele-platform/), version: 1.3.4
    Found link https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/), version: 1.4.0
  Using version 1.4.0 (newest of versions: 1.4.0)
  Created temporary directory: /tmp/pip-unpack-6eafkwrc
  Downloading https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz (2.1MB)
  Downloading from URL https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 (from https://pypi.org/simple/pele-platform/)
  Added pele-platform==1.4.0 from https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 to build tracker '/tmp/pip-req-tracker-hi690for'
  Running setup.py (path:/tmp/pip-wheel-dzdta4tb/pele-platform/setup.py) egg_info for package pele-platform
    Running command python setup.py egg_info
    running egg_info
    creating pip-egg-info/pele_platform.egg-info
    writing requirements to pip-egg-info/pele_platform.egg-info/requires.txt
    writing dependency_links to pip-egg-info/pele_platform.egg-info/dependency_links.txt
    writing pip-egg-info/pele_platform.egg-info/PKG-INFO
    writing top-level names to pip-egg-info/pele_platform.egg-info/top_level.txt
    writing manifest file 'pip-egg-info/pele_platform.egg-info/SOURCES.txt'
    reading manifest file 'pip-egg-info/pele_platform.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
    warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
    warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
    warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
    writing manifest file 'pip-egg-info/pele_platform.egg-info/SOURCES.txt'
  Source in /tmp/pip-wheel-dzdta4tb/pele-platform has version 1.4.0, which satisfies requirement pele-platform==1.4.0 from https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59
  Removed pele-platform==1.4.0 from https://files.pythonhosted.org/packages/d2/7d/8f6c7c977288ed554723c003a885c118889c3bf76ac343961a84d330f85e/pele_platform-1.4.0.tar.gz#sha256=0190af77e0e24482742b634d120ac9b52135716bbbc93929bf688313f63e4a59 from build tracker '/tmp/pip-req-tracker-hi690for'
Building wheels for collected packages: pele-platform
  Created temporary directory: /tmp/pip-wheel-wkg3hfwl
  Running setup.py bdist_wheel for pele-platform: started
  Destination directory: /tmp/pip-wheel-wkg3hfwl
  Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-dzdta4tb/pele-platform/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-wkg3hfwl
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/pele_platform
  copying pele_platform/__init__.py -> build/lib/pele_platform
  copying pele_platform/main.py -> build/lib/pele_platform
  creating build/lib/pele_platform/PPI
  copying pele_platform/PPI/cluster.py -> build/lib/pele_platform/PPI
  copying pele_platform/PPI/simulation_launcher.py -> build/lib/pele_platform/PPI
  copying pele_platform/PPI/run.py -> build/lib/pele_platform/PPI
  copying pele_platform/PPI/__init__.py -> build/lib/pele_platform/PPI
  copying pele_platform/PPI/main.py -> build/lib/pele_platform/PPI
  creating build/lib/pele_platform/Analysis
  copying pele_platform/Analysis/plots.py -> build/lib/pele_platform/Analysis
  copying pele_platform/Analysis/pdf_report.py -> build/lib/pele_platform/Analysis
  copying pele_platform/Analysis/to_mae.py -> build/lib/pele_platform/Analysis
  copying pele_platform/Analysis/__init__.py -> build/lib/pele_platform/Analysis
  creating build/lib/pele_platform/Utilities
  copying pele_platform/Utilities/__init__.py -> build/lib/pele_platform/Utilities
  creating build/lib/pele_platform/Frag
  copying pele_platform/Frag/generative_model.py -> build/lib/pele_platform/Frag
  copying pele_platform/Frag/atoms.py -> build/lib/pele_platform/Frag
  copying pele_platform/Frag/helpers.py -> build/lib/pele_platform/Frag
  copying pele_platform/Frag/simulation.py -> build/lib/pele_platform/Frag
  copying pele_platform/Frag/__init__.py -> build/lib/pele_platform/Frag
  copying pele_platform/Frag/fragments.py -> build/lib/pele_platform/Frag
  creating build/lib/pele_platform/constants
  copying pele_platform/constants/pele_params.py -> build/lib/pele_platform/constants
  copying pele_platform/constants/constants.py -> build/lib/pele_platform/constants
  copying pele_platform/constants/__init__.py -> build/lib/pele_platform/constants
  creating build/lib/pele_platform/Adaptive
  copying pele_platform/Adaptive/simulation.py -> build/lib/pele_platform/Adaptive
  copying pele_platform/Adaptive/__init__.py -> build/lib/pele_platform/Adaptive
  creating build/lib/pele_platform/features
  copying pele_platform/features/adaptive.py -> build/lib/pele_platform/features
  copying pele_platform/features/__init__.py -> build/lib/pele_platform/features
  copying pele_platform/features/frag.py -> build/lib/pele_platform/features
  creating build/lib/pele_platform/Utilities/Parameters
  copying pele_platform/Utilities/Parameters/__init__.py -> build/lib/pele_platform/Utilities/Parameters
  copying pele_platform/Utilities/Parameters/pele_env.py -> build/lib/pele_platform/Utilities/Parameters
  creating build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/split_trajectories.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/metrics.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/missing_residues.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/constraints.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/tica.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/helpers.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/center_of_mass.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/external_files.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/system_prep.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/plop_launcher.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/simulation.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/conda_deployment.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/__init__.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/bestStructs.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/prepwizard.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/template_builder.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/check_env_var.py -> build/lib/pele_platform/Utilities/Helpers
  copying pele_platform/Utilities/Helpers/randomize.py -> build/lib/pele_platform/Utilities/Helpers
  creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams
  copying pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
  copying pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams
  creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/msm_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  creating build/lib/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/glide_folders.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  copying pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  copying pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
  copying pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
  copying pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  copying pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  copying pele_platform/Utilities/Parameters/SimulationParams/WaterExp/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  copying pele_platform/Utilities/Parameters/SimulationParams/WaterExp/waterexp_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
  copying pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
  copying pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  copying pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  creating build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  copying pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  running egg_info
  writing top-level names to pele_platform.egg-info/top_level.txt
  writing pele_platform.egg-info/PKG-INFO
  writing requirements to pele_platform.egg-info/requires.txt
  writing dependency_links to pele_platform.egg-info/dependency_links.txt
  reading manifest file 'pele_platform.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'pele_platform/Utilities/PlopRotTemp/param/*'
  warning: no files found matching 'pele_platform/AdaptivePELE/atomset/*'
  warning: no files found matching 'pele_platform/AdaptivePELE/freeEnergies/*'
  warning: no files found matching '*' under directory 'pele_platform/Utilities/PPP/Data/'
  writing manifest file 'pele_platform.egg-info/SOURCES.txt'
  creating build/lib/pele_platform/Examples
  copying pele_platform/Examples/test.sl -> build/lib/pele_platform/Examples
  creating build/lib/pele_platform/Examples/Adaptive
  copying pele_platform/Examples/Adaptive/STR.rot.assign -> build/lib/pele_platform/Examples/Adaptive
  copying pele_platform/Examples/Adaptive/adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
  copying pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/lib/pele_platform/Examples/Adaptive
  copying pele_platform/Examples/Adaptive/strz -> build/lib/pele_platform/Examples/Adaptive
  copying pele_platform/Examples/Adaptive/test.sl -> build/lib/pele_platform/Examples/Adaptive
  creating build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/AS4_INIT.mae -> build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/PR_AS4.pdb -> build/lib/pele_platform/Examples/Msm
  copying pele_platform/Examples/Msm/input.yaml -> build/lib/pele_platform/Examples/Msm
  creating build/lib/pele_platform/Examples/analysis
  copying pele_platform/Examples/analysis/input.yaml -> build/lib/pele_platform/Examples/analysis
  copying pele_platform/Examples/analysis/input_flags.yaml -> build/lib/pele_platform/Examples/analysis
  copying pele_platform/Examples/analysis/input_flags0.yaml -> build/lib/pele_platform/Examples/analysis
  copying pele_platform/Examples/analysis/input_mae.yaml -> build/lib/pele_platform/Examples/analysis
  creating build/lib/pele_platform/Examples/bias
  copying pele_platform/Examples/bias/complex.pdb -> build/lib/pele_platform/Examples/bias
  copying pele_platform/Examples/bias/input.yaml -> build/lib/pele_platform/Examples/bias
  copying pele_platform/Examples/bias/input_defaults.yaml -> build/lib/pele_platform/Examples/bias
  creating build/lib/pele_platform/Examples/constraints
  copying pele_platform/Examples/constraints/input_external_constraints.yaml -> build/lib/pele_platform/Examples/constraints
  copying pele_platform/Examples/constraints/input_ppp.pdb -> build/lib/pele_platform/Examples/constraints
  copying pele_platform/Examples/constraints/input_ppp.yaml -> build/lib/pele_platform/Examples/constraints
  creating build/lib/pele_platform/Examples/exit
  copying pele_platform/Examples/exit/input.yaml -> build/lib/pele_platform/Examples/exit
  copying pele_platform/Examples/exit/input_defaults.yaml -> build/lib/pele_platform/Examples/exit
  creating build/lib/pele_platform/Examples/exit_soft
  copying pele_platform/Examples/exit_soft/input.yaml -> build/lib/pele_platform/Examples/exit_soft
  copying pele_platform/Examples/exit_soft/input_defaults.yaml -> build/lib/pele_platform/Examples/exit_soft
  creating build/lib/pele_platform/Examples/flags
  copying pele_platform/Examples/flags/input.yaml -> build/lib/pele_platform/Examples/flags
  creating build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/amino.pdb -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/core.pdb -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/input.yaml -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/input_ai.yaml -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/input_core.yaml -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/input_core_sdf.yaml -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/input_sim.yaml -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/ligands.sdf -> build/lib/pele_platform/Examples/frag
  copying pele_platform/Examples/frag/sequential.conf -> build/lib/pele_platform/Examples/frag
  creating build/lib/pele_platform/Examples/global
  copying pele_platform/Examples/global/input.yaml -> build/lib/pele_platform/Examples/global
  copying pele_platform/Examples/global/input_defaults.yaml -> build/lib/pele_platform/Examples/global
  copying pele_platform/Examples/global/input_inputs.yaml -> build/lib/pele_platform/Examples/global
  copying pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/lib/pele_platform/Examples/global
  creating build/lib/pele_platform/Examples/induced_fit
  copying pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/lib/pele_platform/Examples/induced_fit
  copying pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
  copying pele_platform/Examples/induced_fit/input_fast.yaml -> build/lib/pele_platform/Examples/induced_fit
  copying pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/lib/pele_platform/Examples/induced_fit
  copying pele_platform/Examples/induced_fit/input_mae.yaml -> build/lib/pele_platform/Examples/induced_fit
  creating build/lib/pele_platform/Examples/inputs
  copying pele_platform/Examples/inputs/input.yaml -> build/lib/pele_platform/Examples/inputs
  copying pele_platform/Examples/inputs/mn4.sl -> build/lib/pele_platform/Examples/inputs
  copying pele_platform/Examples/inputs/nord3.sge -> build/lib/pele_platform/Examples/inputs
  creating build/lib/pele_platform/Examples/out_in
  copying pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/lib/pele_platform/Examples/out_in
  copying pele_platform/Examples/out_in/input.yaml -> build/lib/pele_platform/Examples/out_in
  creating build/lib/pele_platform/Examples/pca
  copying pele_platform/Examples/pca/1.pdb -> build/lib/pele_platform/Examples/pca
  copying pele_platform/Examples/pca/2.pdb -> build/lib/pele_platform/Examples/pca
  copying pele_platform/Examples/pca/3.pdb -> build/lib/pele_platform/Examples/pca
  copying pele_platform/Examples/pca/input.yaml -> build/lib/pele_platform/Examples/pca
  copying pele_platform/Examples/pca/input_str.yaml -> build/lib/pele_platform/Examples/pca
  creating build/lib/pele_platform/Examples/ppi
  copying pele_platform/Examples/ppi/complex.pdb -> build/lib/pele_platform/Examples/ppi
  copying pele_platform/Examples/ppi/input_global.yaml -> build/lib/pele_platform/Examples/ppi
  copying pele_platform/Examples/ppi/input_global_xtc.yaml -> build/lib/pele_platform/Examples/ppi
  creating build/lib/pele_platform/Examples/production
  copying pele_platform/Examples/production/input.sl -> build/lib/pele_platform/Examples/production
  copying pele_platform/Examples/production/input_mae.yaml -> build/lib/pele_platform/Examples/production
  creating build/lib/pele_platform/Examples/rescoring
  copying pele_platform/Examples/rescoring/input.yaml -> build/lib/pele_platform/Examples/rescoring
  copying pele_platform/Examples/rescoring/input_defaults.yaml -> build/lib/pele_platform/Examples/rescoring
  creating build/lib/pele_platform/Examples/restart
  copying pele_platform/Examples/restart/input.yaml -> build/lib/pele_platform/Examples/restart
  creating build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/input_all.yaml -> build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/input_bs.yaml -> build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/input_bs_defaults.yaml -> build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/input_lig.yaml -> build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/input_lig_defaults.yaml -> build/lib/pele_platform/Examples/water
  copying pele_platform/Examples/water/water_processed.pdb -> build/lib/pele_platform/Examples/water
  creating build/lib/pele_platform/Templates
  copying pele_platform/Templates/pele_template.conf -> build/lib/pele_platform/Templates
  copying pele_platform/Templates/solventParamsHCTOBC.txt -> build/lib/pele_platform/Templates
  copying pele_platform/Templates/template_adaptive.conf -> build/lib/pele_platform/Templates
  installing to build/bdist.linux-armv7l/wheel
  running install
  running install_lib
  creating build/bdist.linux-armv7l
  creating build/bdist.linux-armv7l/wheel
  creating build/bdist.linux-armv7l/wheel/pele_platform
  creating build/bdist.linux-armv7l/wheel/pele_platform/Templates
  copying build/lib/pele_platform/Templates/pele_template.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
  copying build/lib/pele_platform/Templates/template_adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
  copying build/lib/pele_platform/Templates/solventParamsHCTOBC.txt -> build/bdist.linux-armv7l/wheel/pele_platform/Templates
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  copying build/lib/pele_platform/Examples/pca/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  copying build/lib/pele_platform/Examples/pca/2.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  copying build/lib/pele_platform/Examples/pca/input_str.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  copying build/lib/pele_platform/Examples/pca/3.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  copying build/lib/pele_platform/Examples/pca/1.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/pca
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
  copying build/lib/pele_platform/Examples/flags/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/flags
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
  copying build/lib/pele_platform/Examples/inputs/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
  copying build/lib/pele_platform/Examples/inputs/nord3.sge -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
  copying build/lib/pele_platform/Examples/inputs/mn4.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/inputs
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
  copying build/lib/pele_platform/Examples/restart/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/restart
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
  copying build/lib/pele_platform/Examples/exit/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
  copying build/lib/pele_platform/Examples/exit/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit
  copying build/lib/pele_platform/Examples/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/input_sim.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/sequential.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/input_core.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/core.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/input_ai.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/ligands.sdf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/amino.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  copying build/lib/pele_platform/Examples/frag/input_core_sdf.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/frag
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  copying build/lib/pele_platform/Examples/induced_fit/input_fast.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  copying build/lib/pele_platform/Examples/induced_fit/input_fast_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  copying build/lib/pele_platform/Examples/induced_fit/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  copying build/lib/pele_platform/Examples/induced_fit/input_exhaustive.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/induced_fit
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
  copying build/lib/pele_platform/Examples/production/input.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
  copying build/lib/pele_platform/Examples/production/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/production
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
  copying build/lib/pele_platform/Examples/bias/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
  copying build/lib/pele_platform/Examples/bias/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
  copying build/lib/pele_platform/Examples/bias/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/bias
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
  copying build/lib/pele_platform/Examples/out_in/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
  copying build/lib/pele_platform/Examples/out_in/1_3ZON_complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/out_in
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/PR_AS4.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/PR_1A28_protein.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/AS4_INIT.mae -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  copying build/lib/pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Msm
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/input_lig_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/input_bs_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/water_processed.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/input_all.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/input_lig.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  copying build/lib/pele_platform/Examples/water/input_bs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/water
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
  copying build/lib/pele_platform/Examples/exit_soft/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
  copying build/lib/pele_platform/Examples/exit_soft/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/exit_soft
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/ppi
  copying build/lib/pele_platform/Examples/ppi/input_global.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ppi
  copying build/lib/pele_platform/Examples/ppi/input_global_xtc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ppi
  copying build/lib/pele_platform/Examples/ppi/complex.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/ppi
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
  copying build/lib/pele_platform/Examples/global/input_inputs_asterisc.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
  copying build/lib/pele_platform/Examples/global/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
  copying build/lib/pele_platform/Examples/global/input_inputs.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
  copying build/lib/pele_platform/Examples/global/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/global
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
  copying build/lib/pele_platform/Examples/analysis/input_flags.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
  copying build/lib/pele_platform/Examples/analysis/input_flags0.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
  copying build/lib/pele_platform/Examples/analysis/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
  copying build/lib/pele_platform/Examples/analysis/input_mae.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/analysis
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  copying build/lib/pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  copying build/lib/pele_platform/Examples/Adaptive/STR.rot.assign -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  copying build/lib/pele_platform/Examples/Adaptive/test.sl -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  copying build/lib/pele_platform/Examples/Adaptive/strz -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  copying build/lib/pele_platform/Examples/Adaptive/adaptive.conf -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/Adaptive
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
  copying build/lib/pele_platform/Examples/rescoring/input.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
  copying build/lib/pele_platform/Examples/rescoring/input_defaults.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/rescoring
  creating build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
  copying build/lib/pele_platform/Examples/constraints/input_external_constraints.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
  copying build/lib/pele_platform/Examples/constraints/input_ppp.yaml -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
  copying build/lib/pele_platform/Examples/constraints/input_ppp.pdb -> build/bdist.linux-armv7l/wheel/pele_platform/Examples/constraints
  creating build/bdist.linux-armv7l/wheel/pele_platform/PPI
  copying build/lib/pele_platform/PPI/cluster.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
  copying build/lib/pele_platform/PPI/simulation_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
  copying build/lib/pele_platform/PPI/run.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
  copying build/lib/pele_platform/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
  copying build/lib/pele_platform/PPI/main.py -> build/bdist.linux-armv7l/wheel/pele_platform/PPI
  creating build/bdist.linux-armv7l/wheel/pele_platform/Analysis
  copying build/lib/pele_platform/Analysis/plots.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
  copying build/lib/pele_platform/Analysis/pdf_report.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
  copying build/lib/pele_platform/Analysis/to_mae.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
  copying build/lib/pele_platform/Analysis/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Analysis
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/msm_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/glide_folders.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders
  copying build/lib/pele_platform/Utilities/Parameters/SimulationFolders/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationFolders
  copying build/lib/pele_platform/Utilities/Parameters/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
  copying build/lib/pele_platform/Utilities/Parameters/pele_env.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/GlideParams
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PPI
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/BiasParams
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/WaterExp/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/WaterExp/waterexp_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/WaterExp
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/PCA
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/InOutParams
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams/MSMParams
  copying build/lib/pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Parameters/SimulationParams
  copying build/lib/pele_platform/Utilities/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities
  creating build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/calculatePCA4PELE.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/split_trajectories.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/metrics.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/missing_residues.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/constraints.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/tica.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/center_of_mass.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/external_files.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/system_prep.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/plop_launcher.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/conda_deployment.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/bestStructs.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/prepwizard.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/template_builder.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/check_env_var.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/Utilities/Helpers/randomize.py -> build/bdist.linux-armv7l/wheel/pele_platform/Utilities/Helpers
  copying build/lib/pele_platform/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform
  creating build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/generative_model.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/atoms.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/helpers.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  copying build/lib/pele_platform/Frag/fragments.py -> build/bdist.linux-armv7l/wheel/pele_platform/Frag
  creating build/bdist.linux-armv7l/wheel/pele_platform/constants
  copying build/lib/pele_platform/constants/pele_params.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
  copying build/lib/pele_platform/constants/constants.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
  copying build/lib/pele_platform/constants/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/constants
  copying build/lib/pele_platform/main.py -> build/bdist.linux-armv7l/wheel/pele_platform
  creating build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
  copying build/lib/pele_platform/Adaptive/simulation.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
  copying build/lib/pele_platform/Adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/Adaptive
  creating build/bdist.linux-armv7l/wheel/pele_platform/features
  copying build/lib/pele_platform/features/adaptive.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
  copying build/lib/pele_platform/features/__init__.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
  copying build/lib/pele_platform/features/frag.py -> build/bdist.linux-armv7l/wheel/pele_platform/features
  running install_egg_info
  Copying pele_platform.egg-info to build/bdist.linux-armv7l/wheel/pele_platform-1.4.0-py3.4.egg-info
  running install_scripts
  creating build/bdist.linux-armv7l/wheel/pele_platform-1.4.0.dist-info/WHEEL
  creating '/tmp/pip-wheel-wkg3hfwl/pele_platform-1.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
  adding 'pele_platform/__init__.py'
  adding 'pele_platform/main.py'
  adding 'pele_platform/Adaptive/__init__.py'
  adding 'pele_platform/Adaptive/simulation.py'
  adding 'pele_platform/Analysis/__init__.py'
  adding 'pele_platform/Analysis/pdf_report.py'
  adding 'pele_platform/Analysis/plots.py'
  adding 'pele_platform/Analysis/to_mae.py'
  adding 'pele_platform/Examples/test.sl'
  adding 'pele_platform/Examples/Adaptive/STR.rot.assign'
  adding 'pele_platform/Examples/Adaptive/adaptive.conf'
  adding 'pele_platform/Examples/Adaptive/pele_file_4Adaptive.conf'
  adding 'pele_platform/Examples/Adaptive/strz'
  adding 'pele_platform/Examples/Adaptive/test.sl'
  adding 'pele_platform/Examples/Msm/AS4_INIT.mae'
  adding 'pele_platform/Examples/Msm/PR_1A28_protein.pdb'
  adding 'pele_platform/Examples/Msm/PR_1A28_xray_-_minimized.pdb'
  adding 'pele_platform/Examples/Msm/PR_1A28_xray_-_minimized_processed.pdb'
  adding 'pele_platform/Examples/Msm/PR_AS4.pdb'
  adding 'pele_platform/Examples/Msm/input.yaml'
  adding 'pele_platform/Examples/analysis/input.yaml'
  adding 'pele_platform/Examples/analysis/input_flags.yaml'
  adding 'pele_platform/Examples/analysis/input_flags0.yaml'
  adding 'pele_platform/Examples/analysis/input_mae.yaml'
  adding 'pele_platform/Examples/bias/complex.pdb'
  adding 'pele_platform/Examples/bias/input.yaml'
  adding 'pele_platform/Examples/bias/input_defaults.yaml'
  adding 'pele_platform/Examples/constraints/input_external_constraints.yaml'
  adding 'pele_platform/Examples/constraints/input_ppp.pdb'
  adding 'pele_platform/Examples/constraints/input_ppp.yaml'
  adding 'pele_platform/Examples/exit/input.yaml'
  adding 'pele_platform/Examples/exit/input_defaults.yaml'
  adding 'pele_platform/Examples/exit_soft/input.yaml'
  adding 'pele_platform/Examples/exit_soft/input_defaults.yaml'
  adding 'pele_platform/Examples/flags/input.yaml'
  adding 'pele_platform/Examples/frag/1w7h_preparation_structure_2w.pdb'
  adding 'pele_platform/Examples/frag/1w7h_preparation_structure_2w_processed.pdb'
  adding 'pele_platform/Examples/frag/amino.pdb'
  adding 'pele_platform/Examples/frag/core.pdb'
  adding 'pele_platform/Examples/frag/input.yaml'
  adding 'pele_platform/Examples/frag/input_ai.yaml'
  adding 'pele_platform/Examples/frag/input_core.yaml'
  adding 'pele_platform/Examples/frag/input_core_sdf.yaml'
  adding 'pele_platform/Examples/frag/input_sim.yaml'
  adding 'pele_platform/Examples/frag/ligands.sdf'
  adding 'pele_platform/Examples/frag/sequential.conf'
  adding 'pele_platform/Examples/global/input.yaml'
  adding 'pele_platform/Examples/global/input_defaults.yaml'
  adding 'pele_platform/Examples/global/input_inputs.yaml'
  adding 'pele_platform/Examples/global/input_inputs_asterisc.yaml'
  adding 'pele_platform/Examples/induced_fit/input_exhaustive.yaml'
  adding 'pele_platform/Examples/induced_fit/input_exhaustive_defaults.yaml'
  adding 'pele_platform/Examples/induced_fit/input_fast.yaml'
  adding 'pele_platform/Examples/induced_fit/input_fast_defaults.yaml'
  adding 'pele_platform/Examples/induced_fit/input_mae.yaml'
  adding 'pele_platform/Examples/inputs/input.yaml'
  adding 'pele_platform/Examples/inputs/mn4.sl'
  adding 'pele_platform/Examples/inputs/nord3.sge'
  adding 'pele_platform/Examples/out_in/1_3ZON_complex.pdb'
  adding 'pele_platform/Examples/out_in/input.yaml'
  adding 'pele_platform/Examples/pca/1.pdb'
  adding 'pele_platform/Examples/pca/2.pdb'
  adding 'pele_platform/Examples/pca/3.pdb'
  adding 'pele_platform/Examples/pca/input.yaml'
  adding 'pele_platform/Examples/pca/input_str.yaml'
  adding 'pele_platform/Examples/ppi/complex.pdb'
  adding 'pele_platform/Examples/ppi/input_global.yaml'
  adding 'pele_platform/Examples/ppi/input_global_xtc.yaml'
  adding 'pele_platform/Examples/production/input.sl'
  adding 'pele_platform/Examples/production/input_mae.yaml'
  adding 'pele_platform/Examples/rescoring/input.yaml'
  adding 'pele_platform/Examples/rescoring/input_defaults.yaml'
  adding 'pele_platform/Examples/restart/input.yaml'
  adding 'pele_platform/Examples/water/input_all.yaml'
  adding 'pele_platform/Examples/water/input_bs.yaml'
  adding 'pele_platform/Examples/water/input_bs_defaults.yaml'
  adding 'pele_platform/Examples/water/input_lig.yaml'
  adding 'pele_platform/Examples/water/input_lig_defaults.yaml'
  adding 'pele_platform/Examples/water/water_processed.pdb'
  adding 'pele_platform/Frag/__init__.py'
  adding 'pele_platform/Frag/atoms.py'
  adding 'pele_platform/Frag/fragments.py'
  adding 'pele_platform/Frag/generative_model.py'
  adding 'pele_platform/Frag/helpers.py'
  adding 'pele_platform/Frag/simulation.py'
  adding 'pele_platform/PPI/__init__.py'
  adding 'pele_platform/PPI/cluster.py'
  adding 'pele_platform/PPI/main.py'
  adding 'pele_platform/PPI/run.py'
  adding 'pele_platform/PPI/simulation_launcher.py'
  adding 'pele_platform/Templates/pele_template.conf'
  adding 'pele_platform/Templates/solventParamsHCTOBC.txt'
  adding 'pele_platform/Templates/template_adaptive.conf'
  adding 'pele_platform/Utilities/__init__.py'
  adding 'pele_platform/Utilities/Helpers/__init__.py'
  adding 'pele_platform/Utilities/Helpers/bestStructs.py'
  adding 'pele_platform/Utilities/Helpers/calculatePCA4PELE.py'
  adding 'pele_platform/Utilities/Helpers/center_of_mass.py'
  adding 'pele_platform/Utilities/Helpers/check_env_var.py'
  adding 'pele_platform/Utilities/Helpers/conda_deployment.py'
  adding 'pele_platform/Utilities/Helpers/constraints.py'
  adding 'pele_platform/Utilities/Helpers/external_files.py'
  adding 'pele_platform/Utilities/Helpers/helpers.py'
  adding 'pele_platform/Utilities/Helpers/metrics.py'
  adding 'pele_platform/Utilities/Helpers/missing_residues.py'
  adding 'pele_platform/Utilities/Helpers/plop_launcher.py'
  adding 'pele_platform/Utilities/Helpers/prepwizard.py'
  adding 'pele_platform/Utilities/Helpers/randomize.py'
  adding 'pele_platform/Utilities/Helpers/simulation.py'
  adding 'pele_platform/Utilities/Helpers/solventOBCParamsGenerator.py'
  adding 'pele_platform/Utilities/Helpers/split_trajectories.py'
  adding 'pele_platform/Utilities/Helpers/system_prep.py'
  adding 'pele_platform/Utilities/Helpers/template_builder.py'
  adding 'pele_platform/Utilities/Helpers/tica.py'
  adding 'pele_platform/Utilities/Parameters/__init__.py'
  adding 'pele_platform/Utilities/Parameters/pele_env.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/simulation_folders.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/GlideFolders/glide_folders.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationFolders/MSMFolders/msm_folders.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/simulation_params.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/BiasParams/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/BiasParams/bias_params.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/GlideParams/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/GlideParams/glide_params.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/InOutParams/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/InOutParams/inout_params.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/MSMParams/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/MSMParams/msm_params.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/PCA/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/PCA/pca.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/PPI/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/PPI/ppi.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/WaterExp/__init__.py'
  adding 'pele_platform/Utilities/Parameters/SimulationParams/WaterExp/waterexp_params.py'
  adding 'pele_platform/constants/__init__.py'
  adding 'pele_platform/constants/constants.py'
  adding 'pele_platform/constants/pele_params.py'
  adding 'pele_platform/features/__init__.py'
  adding 'pele_platform/features/adaptive.py'
  adding 'pele_platform/features/frag.py'
  adding 'pele_platform-1.4.0.dist-info/METADATA'
  adding 'pele_platform-1.4.0.dist-info/WHEEL'
  adding 'pele_platform-1.4.0.dist-info/top_level.txt'
  adding 'pele_platform-1.4.0.dist-info/RECORD'
  removing build/bdist.linux-armv7l/wheel
  Running setup.py bdist_wheel for pele-platform: finished with status 'done'
  Stored in directory: /tmp/tmpnd5hvgrd
Successfully built pele-platform
Cleaning up...
  Removing source in /tmp/pip-wheel-dzdta4tb/pele-platform
Removed build tracker '/tmp/pip-req-tracker-hi690for'