Created temporary directory: /tmp/pip-ephem-wheel-cache-vwh60xnb Created temporary directory: /tmp/pip-req-tracker-ift25sej Created requirements tracker '/tmp/pip-req-tracker-ift25sej' Created temporary directory: /tmp/pip-wheel-m4wog41w Collecting scipion-em-relion==1.0.9 1 location(s) to search for versions of scipion-em-relion: * https://pypi.org/simple/scipion-em-relion/ Getting page https://pypi.org/simple/scipion-em-relion/ Analyzing links from page https://pypi.org/simple/scipion-em-relion/ Found link https://files.pythonhosted.org/packages/05/a2/d5f1ffa8537f36f40b34263047919ae34baccbe64147bc68cc6c3f8777d9/scipion-em-relion-1.0.0.tar.gz#sha256=b12f8f634114a7e3cb0b33d7f6204bc47b8b5bb3815d3855feedbada752368fb (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.0 Found link https://files.pythonhosted.org/packages/48/4b/02aa5c517d8e6db7aa85d26b76f016841c9e34d58e21e04fa23423a9ef06/scipion-em-relion-1.0.1.tar.gz#sha256=6d7d065852276760640e5c6cb90a35fa93e7096556cdd591d015085c4b3a2792 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.1 Found link https://files.pythonhosted.org/packages/55/7b/90403e2f937a52301e27955b49665b462df0c4ab02da6444c01f3543ae42/scipion-em-relion-1.0.2.tar.gz#sha256=e53dc640184f6e78f8449bd9bf03524820495b8e2eaf219cc558a87da89dbf22 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.2 Found link https://files.pythonhosted.org/packages/57/e2/3c6741b62688a1b20b159f7efa0139a9573eb17d72d745b3023f2e8a51fd/scipion-em-relion-1.0.3.tar.gz#sha256=5084bfc2edf75de02f0577fe57e3f63de3e20fff862a40525971c5c3682d072a (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.3 Found link https://files.pythonhosted.org/packages/dd/92/ea6e7092b04a7b25c526d2c0e4243183e4146b3cbd85a6950875083a3abb/scipion-em-relion-1.0.4.tar.gz#sha256=d7adc3cc5c1f4f631cd298cea58e8c3ec035902362ba1f875059f2f9b4b58c1b (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.4 Found link https://files.pythonhosted.org/packages/fb/c0/9945e6d60f050b3493b46e980c1feaab668dee0cd15ba2b5030c2875bbf0/scipion-em-relion-1.0.5.tar.gz#sha256=2eeaed3eef32e0a16656bd36e4648aa68d6f3b45e8caa9e9a7af36e3a72b6449 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.5 Found link https://files.pythonhosted.org/packages/86/87/bfc3ea75b9f88d116bc644ef38d709bc3a1e8cde59fc7af1cd944596713b/scipion-em-relion-1.0.6.tar.gz#sha256=326a1814aa725f2ce3bb40d7cc535d3057f17eac6a8e36232483070d2ac19d26 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.6 Found link https://files.pythonhosted.org/packages/70/c1/24483e734ce2077d9fb9b1bb370ddf6ec2430e962fc1349e7ab1ac736137/scipion-em-relion-1.0.7.tar.gz#sha256=06becee63db18acc16ae2d22bac5f5c55e495922246f5aea10ffe4f47d40d9f7 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.7 Found link https://files.pythonhosted.org/packages/1f/82/9f8eb2869092529d10d9d3fbdf685a232eb70971678ee502858c7c4c7e64/scipion-em-relion-1.0.8.tar.gz#sha256=88105eba3688fb98a76d3e9e5343f4688ee191a6e45343b24344e2b9ddb1b754 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.8 Found link https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 (from https://pypi.org/simple/scipion-em-relion/), version: 1.0.9 Using version 1.0.9 (newest of versions: 1.0.9) Created temporary directory: /tmp/pip-unpack-s9zwmin3 Downloading https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz (205kB) Downloading from URL https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 (from https://pypi.org/simple/scipion-em-relion/) Added scipion-em-relion==1.0.9 from https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 to build tracker '/tmp/pip-req-tracker-ift25sej' Running setup.py (path:/tmp/pip-wheel-m4wog41w/scipion-em-relion/setup.py) egg_info for package scipion-em-relion Running command python setup.py egg_info running egg_info creating pip-egg-info/scipion_em_relion.egg-info writing top-level names to pip-egg-info/scipion_em_relion.egg-info/top_level.txt writing pip-egg-info/scipion_em_relion.egg-info/PKG-INFO writing dependency_links to pip-egg-info/scipion_em_relion.egg-info/dependency_links.txt writing manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/scipion_em_relion.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-m4wog41w/scipion-em-relion has version 1.0.9, which satisfies requirement scipion-em-relion==1.0.9 from https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 Removed scipion-em-relion==1.0.9 from https://files.pythonhosted.org/packages/f2/3f/211e14befe51bb9447e4d024f3e01c48e96049dd00e6ca402e0b2c1e2ac6/scipion-em-relion-1.0.9.tar.gz#sha256=4fc9a904a99fbd81617b29fd9e5f6e15b67c0da5a1ed5519c548985fb0954af4 from build tracker '/tmp/pip-req-tracker-ift25sej' Building wheels for collected packages: scipion-em-relion Created temporary directory: /tmp/pip-wheel-cj5cqptq Running setup.py bdist_wheel for scipion-em-relion: started Destination directory: /tmp/pip-wheel-cj5cqptq Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-m4wog41w/scipion-em-relion/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-cj5cqptq running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/relion copying relion/constants.py -> build/lib/relion copying relion/__init__.py -> build/lib/relion copying relion/bibtex.py -> build/lib/relion copying relion/objects.py -> build/lib/relion copying relion/wizards.py -> build/lib/relion creating build/lib/relion/convert copying relion/convert/dataimport.py -> build/lib/relion/convert copying relion/convert/convert.py -> build/lib/relion/convert copying relion/convert/__init__.py -> build/lib/relion/convert copying relion/convert/metadata.py -> build/lib/relion/convert creating build/lib/relion/viewers copying relion/viewers/viewers.py -> build/lib/relion/viewers copying relion/viewers/__init__.py -> build/lib/relion/viewers copying relion/viewers/viewer_ctfrefine.py -> build/lib/relion/viewers creating build/lib/relion/tests copying relion/tests/test_convert_relion.py -> build/lib/relion/tests copying relion/tests/test_protocols_relion.py -> build/lib/relion/tests copying relion/tests/__init__.py -> build/lib/relion/tests copying relion/tests/test_protocols_relion3.py -> build/lib/relion/tests copying relion/tests/test_workflow_relion3.py -> build/lib/relion/tests copying relion/tests/test_workflow_relion.py -> build/lib/relion/tests creating build/lib/relion/protocols copying relion/protocols/protocol_initialmodel.py -> build/lib/relion/protocols copying relion/protocols/protocol_postprocess.py -> build/lib/relion/protocols copying relion/protocols/protocol_create_mask3d.py -> build/lib/relion/protocols copying relion/protocols/protocol_center_averages.py -> build/lib/relion/protocols copying relion/protocols/protocol_autopick_v2.py -> build/lib/relion/protocols copying relion/protocols/protocol_bayesian_polishing.py -> build/lib/relion/protocols copying relion/protocols/protocol_reconstruct.py -> build/lib/relion/protocols copying relion/protocols/protocol_classify2d.py -> build/lib/relion/protocols copying relion/protocols/protocol_ctf_refinement.py -> build/lib/relion/protocols copying relion/protocols/protocol_multibody.py -> build/lib/relion/protocols copying relion/protocols/protocol_classify3d.py -> build/lib/relion/protocols copying relion/protocols/protocol_base.py -> build/lib/relion/protocols copying relion/protocols/protocol_autopick.py -> build/lib/relion/protocols copying relion/protocols/protocol_localres.py -> build/lib/relion/protocols copying relion/protocols/protocol_subtract.py -> build/lib/relion/protocols copying relion/protocols/protocol_motioncor.py -> build/lib/relion/protocols copying relion/protocols/protocol_expand_symmetry.py -> build/lib/relion/protocols copying relion/protocols/protocol_symmetrize_volume.py -> build/lib/relion/protocols copying relion/protocols/protocol_extract_particles.py -> build/lib/relion/protocols copying relion/protocols/protocol_autopick_log.py -> build/lib/relion/protocols copying relion/protocols/__init__.py -> build/lib/relion/protocols copying relion/protocols/protocol_sort.py -> build/lib/relion/protocols copying relion/protocols/protocol_extract_particles_movies.py -> build/lib/relion/protocols copying relion/protocols/protocol_export_ctf.py -> build/lib/relion/protocols copying relion/protocols/protocol_export_particles.py -> build/lib/relion/protocols copying relion/protocols/protocol_polish.py -> build/lib/relion/protocols copying relion/protocols/protocol_preprocess.py -> build/lib/relion/protocols copying relion/protocols/protocol_refine3d.py -> build/lib/relion/protocols copying relion/relion_logo.png -> build/lib/relion copying relion/protocols.conf -> build/lib/relion installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/relion creating build/bdist.linux-armv7l/wheel/relion/convert copying build/lib/relion/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/relion/convert copying build/lib/relion/convert/convert.py -> build/bdist.linux-armv7l/wheel/relion/convert copying build/lib/relion/convert/__init__.py -> build/bdist.linux-armv7l/wheel/relion/convert copying build/lib/relion/convert/metadata.py -> build/bdist.linux-armv7l/wheel/relion/convert copying build/lib/relion/constants.py -> build/bdist.linux-armv7l/wheel/relion copying build/lib/relion/protocols.conf -> build/bdist.linux-armv7l/wheel/relion creating build/bdist.linux-armv7l/wheel/relion/viewers copying build/lib/relion/viewers/viewers.py -> build/bdist.linux-armv7l/wheel/relion/viewers copying build/lib/relion/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/relion/viewers copying build/lib/relion/viewers/viewer_ctfrefine.py -> build/bdist.linux-armv7l/wheel/relion/viewers copying build/lib/relion/relion_logo.png -> build/bdist.linux-armv7l/wheel/relion copying build/lib/relion/__init__.py -> build/bdist.linux-armv7l/wheel/relion copying build/lib/relion/bibtex.py -> build/bdist.linux-armv7l/wheel/relion creating build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/test_convert_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/test_protocols_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/__init__.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/test_protocols_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/test_workflow_relion3.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/tests/test_workflow_relion.py -> build/bdist.linux-armv7l/wheel/relion/tests copying build/lib/relion/objects.py -> build/bdist.linux-armv7l/wheel/relion creating build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_postprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_center_averages.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_autopick_v2.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_bayesian_polishing.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_classify2d.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_ctf_refinement.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_multibody.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_classify3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_base.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_autopick.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_localres.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_subtract.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_motioncor.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_expand_symmetry.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_symmetrize_volume.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_autopick_log.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_sort.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_export_ctf.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_export_particles.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_polish.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/protocols/protocol_refine3d.py -> build/bdist.linux-armv7l/wheel/relion/protocols copying build/lib/relion/wizards.py -> build/bdist.linux-armv7l/wheel/relion running install_egg_info running egg_info writing top-level names to scipion_em_relion.egg-info/top_level.txt writing dependency_links to scipion_em_relion.egg-info/dependency_links.txt writing scipion_em_relion.egg-info/PKG-INFO reading manifest file 'scipion_em_relion.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scipion_em_relion.egg-info/SOURCES.txt' Copying scipion_em_relion.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_relion-1.0.9-py3.4.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/scipion_em_relion-1.0.9.dist-info/WHEEL creating '/tmp/pip-wheel-cj5cqptq/scipion_em_relion-1.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'relion/__init__.py' adding 'relion/bibtex.py' adding 'relion/constants.py' adding 'relion/objects.py' adding 'relion/protocols.conf' adding 'relion/relion_logo.png' adding 'relion/wizards.py' adding 'relion/convert/__init__.py' adding 'relion/convert/convert.py' adding 'relion/convert/dataimport.py' adding 'relion/convert/metadata.py' adding 'relion/protocols/__init__.py' adding 'relion/protocols/protocol_autopick.py' adding 'relion/protocols/protocol_autopick_log.py' adding 'relion/protocols/protocol_autopick_v2.py' adding 'relion/protocols/protocol_base.py' adding 'relion/protocols/protocol_bayesian_polishing.py' adding 'relion/protocols/protocol_center_averages.py' adding 'relion/protocols/protocol_classify2d.py' adding 'relion/protocols/protocol_classify3d.py' adding 'relion/protocols/protocol_create_mask3d.py' adding 'relion/protocols/protocol_ctf_refinement.py' adding 'relion/protocols/protocol_expand_symmetry.py' adding 'relion/protocols/protocol_export_ctf.py' adding 'relion/protocols/protocol_export_particles.py' adding 'relion/protocols/protocol_extract_particles.py' adding 'relion/protocols/protocol_extract_particles_movies.py' adding 'relion/protocols/protocol_initialmodel.py' adding 'relion/protocols/protocol_localres.py' adding 'relion/protocols/protocol_motioncor.py' adding 'relion/protocols/protocol_multibody.py' adding 'relion/protocols/protocol_polish.py' adding 'relion/protocols/protocol_postprocess.py' adding 'relion/protocols/protocol_preprocess.py' adding 'relion/protocols/protocol_reconstruct.py' adding 'relion/protocols/protocol_refine3d.py' adding 'relion/protocols/protocol_sort.py' adding 'relion/protocols/protocol_subtract.py' adding 'relion/protocols/protocol_symmetrize_volume.py' adding 'relion/tests/__init__.py' adding 'relion/tests/test_convert_relion.py' adding 'relion/tests/test_protocols_relion.py' adding 'relion/tests/test_protocols_relion3.py' adding 'relion/tests/test_workflow_relion.py' adding 'relion/tests/test_workflow_relion3.py' adding 'relion/viewers/__init__.py' adding 'relion/viewers/viewer_ctfrefine.py' adding 'relion/viewers/viewers.py' adding 'scipion_em_relion-1.0.9.dist-info/LICENSE' adding 'scipion_em_relion-1.0.9.dist-info/METADATA' adding 'scipion_em_relion-1.0.9.dist-info/WHEEL' adding 'scipion_em_relion-1.0.9.dist-info/top_level.txt' adding 'scipion_em_relion-1.0.9.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for scipion-em-relion: finished with status 'done' Stored in directory: /tmp/tmptyvrg09o Successfully built scipion-em-relion Cleaning up... Removing source in /tmp/pip-wheel-m4wog41w/scipion-em-relion Removed build tracker '/tmp/pip-req-tracker-ift25sej'