Created temporary directory: /tmp/pip-ephem-wheel-cache-sw0594hw Created temporary directory: /tmp/pip-req-tracker-4bbmkuf2 Created requirements tracker '/tmp/pip-req-tracker-4bbmkuf2' Created temporary directory: /tmp/pip-wheel-0ok6vmz4 Collecting humann2==2.8.2 1 location(s) to search for versions of humann2: * https://pypi.org/simple/humann2/ Getting page https://pypi.org/simple/humann2/ Analyzing links from page https://pypi.org/simple/humann2/ Found link https://files.pythonhosted.org/packages/c3/66/2a1172f2fcb8287f1fa2c76ace974022bd18cc0a9adb6c2940b3a737f1d0/humann2-0.6.1.tar.gz#sha256=2bf89066d5593876bf1cb425a9d11981efced1c4e16b646e30233c32b658443e (from https://pypi.org/simple/humann2/), version: 0.6.1 Found link https://files.pythonhosted.org/packages/59/39/56713a5d7290dd3cbf29fee2569eab4942e6cea554d1dea0d2a9cd5ff7dc/humann2-0.6.2.tar.gz#sha256=0104a84c2e58eafd837e671e19cac6b3da994a4547e00aa504fcb84915c0129a (from https://pypi.org/simple/humann2/), version: 0.6.2 Found link https://files.pythonhosted.org/packages/ea/7f/be257ab8b01ae5e781d1f5c8cd2623f73702c0493f5a1013c7ed1eb466a0/humann2-0.7.0.tar.gz#sha256=fab0438ac037a2843d2d7ffa74a8f113e3a299144c6cfdc4a100cc16eebed274 (from https://pypi.org/simple/humann2/), version: 0.7.0 Found link https://files.pythonhosted.org/packages/4d/36/014a45940edad508575a24bd00ba351c2bf4f8affb47b7546578f00bbcad/humann2-0.7.1.tar.gz#sha256=e22ad847e44de8e8ddabf687df9ae566b56c9870943223cdc438c475272c9fe0 (from https://pypi.org/simple/humann2/), version: 0.7.1 Found link https://files.pythonhosted.org/packages/9e/51/4bc4ecb0e8591588a933cd6db972012eb8d3c30e63666aec6abb7ab306e4/humann2-0.8.0.tar.gz#sha256=21527527951cbedd772c4ca0316d36819ecf7f85444f752fcc11c0eac1213f03 (from https://pypi.org/simple/humann2/), version: 0.8.0 Found link https://files.pythonhosted.org/packages/06/a3/55f01a55b20191d0051604c1f85aaf4784b7e48e009142de990871e2635d/humann2-0.8.1.tar.gz#sha256=67ba661507ab57ce9a2d13d12e3a8d3a117017907799eab845382df43a6cc785 (from https://pypi.org/simple/humann2/), version: 0.8.1 Found link https://files.pythonhosted.org/packages/b1/f6/a07e651459490d3d44aeeedcd3797169fbf5a7df83b9f8e87712aa7b9fad/humann2-0.8.2.tar.gz#sha256=6fc49f4b1b43690f12cf36343ce252fb988129843828b593a894a085bbb8ad83 (from https://pypi.org/simple/humann2/), version: 0.8.2 Found link https://files.pythonhosted.org/packages/c4/bf/002cfecf7bb0529a3127b709a309fbc02ee9710448ee50353c85ecad2910/humann2-0.9.0.tar.gz#sha256=edb855e5b38d2177cda7aceb7cc47b6524dd1cffc06f6069a4bf021d905937ea (from https://pypi.org/simple/humann2/), version: 0.9.0 Found link https://files.pythonhosted.org/packages/cf/2e/55f3d984b2078f8ad64fbe9b6d851b77d35a0b415db31e14001c7b766676/humann2-0.9.1.tar.gz#sha256=691f5d98a211b966d29026e3a46161731565d7043de98d168e17b1acff882b82 (from https://pypi.org/simple/humann2/), version: 0.9.1 Found link https://files.pythonhosted.org/packages/b5/8f/cc7b7d11a9e4acb64535be55218afeee5129eb586c9a1a87e7236172154a/humann2-0.9.2.tar.gz#sha256=7007cce99ad0b06f8f9532c28618303ab7b104257579ec8d2f328c58ae43ed27 (from https://pypi.org/simple/humann2/), version: 0.9.2 Found link https://files.pythonhosted.org/packages/d1/21/0c932fa8b445745f70b760ee4286eedc4f5947b5617d1fb4ca252bcc4284/humann2-0.9.3.tar.gz#sha256=c758549ebaff38f2c34b64be1ef621b6715a47f195dace8da237b507cad86425 (from https://pypi.org/simple/humann2/), version: 0.9.3 Found link https://files.pythonhosted.org/packages/3a/ff/969b72bc0bc24df3046915842fdd27195e68914c886b3046a356a377f8e5/humann2-0.9.4.tar.gz#sha256=ba4f0c7a43f9733e1b244b136e6063fc4a8e23745734a1bbe3154551c3ab014d (from https://pypi.org/simple/humann2/), version: 0.9.4 Found link https://files.pythonhosted.org/packages/d5/2b/62a05b5a2e6b69693960dcf85d7e6599ba04764889af99902e138d492194/humann2-0.9.5.tar.gz#sha256=f0b713e3ea2aa4f55049c9ae7715318c6454112903b976683a21f6c16c344c17 (from https://pypi.org/simple/humann2/), version: 0.9.5 Found link https://files.pythonhosted.org/packages/ab/46/f96e93f2cdcde40f89720f8b852904ff704a6b1268f2d5ef9600c50e730a/humann2-0.9.6.tar.gz#sha256=d2399572c6a41cfb1f44cf6547169a36dc8550d7b0265d7f1f2f7a65294f86e9 (from https://pypi.org/simple/humann2/), version: 0.9.6 Found link https://files.pythonhosted.org/packages/29/e6/8be2db9877116022f9bfa8c2081d60991d1d823d8c0d35355e2c9f0d7f9f/humann2-0.9.7.tar.gz#sha256=2612f984dedfaff6284842f07bbc09615865a94e965b16f729705a8287923a03 (from https://pypi.org/simple/humann2/), version: 0.9.7 Found link https://files.pythonhosted.org/packages/0a/9a/2d1cd74c4e33521ca09bc6e948eda0577bead1c47deab502431f5053a204/humann2-0.9.8.tar.gz#sha256=d0f02069c6cd1f523beca16a5b0c5a8542c6a52d91cf71361886022de0bb52cb (from https://pypi.org/simple/humann2/), version: 0.9.8 Found link https://files.pythonhosted.org/packages/71/70/9c45436b6dab38706826a822411d6386376205d9c9fa53972e2ff3b7dda8/humann2-0.9.9.tar.gz#sha256=1193f799b7a976f2212df0351b1cbbd050a186485bd55da1c0a684468242c936 (from https://pypi.org/simple/humann2/), version: 0.9.9 Found link https://files.pythonhosted.org/packages/81/b3/0ecd056032a0512247f8580b5c613873c803199776d06d21faa1f347836a/humann2-0.9.10.tar.gz#sha256=a375e9e2668d0304de6139146f143b191e6c53712f5e07aa5aca6f32755ce4c7 (from https://pypi.org/simple/humann2/), version: 0.9.10 Found link https://files.pythonhosted.org/packages/8a/05/f1ed9f2a2e55b68fb5904dd70f09ff887ed0e9564fff63f0c23b2358216a/humann2-0.10.0.tar.gz#sha256=a0b6fb92734a76039e842f877f3abd4ef54ee5a6cc6946167be721731db0816c (from https://pypi.org/simple/humann2/), version: 0.10.0 Found link https://files.pythonhosted.org/packages/58/80/afe92b880dd0f73305332c8e9dfb37acd01b688840eb2dfeaa104da18fd5/humann2-0.11.0.tar.gz#sha256=d1922394136d062af2c758d7f30775c929db237b912c22a69aa8557cb7ff06a5 (from https://pypi.org/simple/humann2/), version: 0.11.0 Found link https://files.pythonhosted.org/packages/43/07/ec41577c3c1f9b578875ade8ed549d14fc2944c13cb7504579d542b62a69/humann2-0.11.1.tar.gz#sha256=be439ce3b4149f4dff900d2005a5951f99c4edc798c123f264549eb6d2b9bee3 (from https://pypi.org/simple/humann2/), version: 0.11.1 Found link https://files.pythonhosted.org/packages/f2/c6/01ef12082fa44f06c5329bacb49c6dbeb4a04c66a60b0f64e4a9f1fb824a/humann2-0.11.2.tar.gz#sha256=e38dd7e04705f15b00159b68f4b2e9645806f83d39127e33ca08c236d4a4f86b (from https://pypi.org/simple/humann2/), version: 0.11.2 Found link https://files.pythonhosted.org/packages/4b/f4/97b25cf9ec67f75a756122c2ae211877b5594b9a244dab1f677673e26ca5/humann2-2.8.0.tar.gz#sha256=577ffa6c10d4ea79e5fd12a6852822d5a5c528b10c3d8895ca652ac4b6eb7204 (from https://pypi.org/simple/humann2/), version: 2.8.0 Found link https://files.pythonhosted.org/packages/eb/b4/c6975eb023e915ef999184c040474a781c3f0979d2f1c557fc6e693a7dbb/humann2-2.8.1.tar.gz#sha256=1b2e646eea8de21c8ccc3bbb128e8aa57bf7e8f9901c3098cb6a0eeb10a82489 (from https://pypi.org/simple/humann2/), version: 2.8.1 Found link https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz#sha256=bfeaf9568fab96b461df42bb732950d61db31865a405430a19e3e5618219dc0b (from https://pypi.org/simple/humann2/), version: 2.8.2 Using version 2.8.2 (newest of versions: 2.8.2) Created temporary directory: /tmp/pip-unpack-_kve_anm Downloading https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz (59.2MB) Downloading from URL https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz#sha256=bfeaf9568fab96b461df42bb732950d61db31865a405430a19e3e5618219dc0b (from https://pypi.org/simple/humann2/) Added humann2==2.8.2 from https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz#sha256=bfeaf9568fab96b461df42bb732950d61db31865a405430a19e3e5618219dc0b to build tracker '/tmp/pip-req-tracker-4bbmkuf2' Running setup.py (path:/tmp/pip-wheel-0ok6vmz4/humann2/setup.py) egg_info for package humann2 Running command python setup.py egg_info running egg_info creating pip-egg-info/humann2.egg-info writing dependency_links to pip-egg-info/humann2.egg-info/dependency_links.txt writing top-level names to pip-egg-info/humann2.egg-info/top_level.txt writing entry points to pip-egg-info/humann2.egg-info/entry_points.txt writing pip-egg-info/humann2.egg-info/PKG-INFO writing manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' writing manifest file 'pip-egg-info/humann2.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-0ok6vmz4/humann2 has version 2.8.2, which satisfies requirement humann2==2.8.2 from https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz#sha256=bfeaf9568fab96b461df42bb732950d61db31865a405430a19e3e5618219dc0b Removed humann2==2.8.2 from https://files.pythonhosted.org/packages/58/e8/d64074e0c9e8d5cef5c3a430739831eb9930fc2c3647b6dbff70ccd5a953/humann2-2.8.2.tar.gz#sha256=bfeaf9568fab96b461df42bb732950d61db31865a405430a19e3e5618219dc0b from build tracker '/tmp/pip-req-tracker-4bbmkuf2' Building wheels for collected packages: humann2 Created temporary directory: /tmp/pip-wheel-xoqrq3a_ Running setup.py bdist_wheel for humann2: started Destination directory: /tmp/pip-wheel-xoqrq3a_ Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-0ok6vmz4/humann2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-xoqrq3a_ running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/humann2 copying humann2/check.py -> build/lib/humann2 copying humann2/config.py -> build/lib/humann2 copying humann2/humann2.py -> build/lib/humann2 copying humann2/store.py -> build/lib/humann2 copying humann2/__init__.py -> build/lib/humann2 copying humann2/utilities.py -> build/lib/humann2 creating build/lib/humann2/quantify copying humann2/quantify/modules.py -> build/lib/humann2/quantify copying humann2/quantify/xipe.py -> build/lib/humann2/quantify copying humann2/quantify/__init__.py -> build/lib/humann2/quantify copying humann2/quantify/families.py -> build/lib/humann2/quantify copying humann2/quantify/chi2cdf.py -> build/lib/humann2/quantify copying humann2/quantify/MinPath12hmp.py -> build/lib/humann2/quantify creating build/lib/humann2/tests copying humann2/tests/advanced_tests_utilities.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_blastx_coverage.py -> build/lib/humann2/tests copying humann2/tests/cfg.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_quantify_modules.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_quantify_modules.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_quantify_families.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_store.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_biom_tools.py -> build/lib/humann2/tests copying humann2/tests/humann2_test.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_humann2.py -> build/lib/humann2/tests copying humann2/tests/utils.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_tools.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_nucleotide_search.py -> build/lib/humann2/tests copying humann2/tests/functional_tests_biom_humann2.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_store.py -> build/lib/humann2/tests copying humann2/tests/advanced_tests_translated_search.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_utilities.py -> build/lib/humann2/tests copying humann2/tests/__init__.py -> build/lib/humann2/tests copying humann2/tests/basic_tests_nucleotide_search.py -> build/lib/humann2/tests creating build/lib/humann2/tools copying humann2/tools/rename_table.py -> build/lib/humann2/tools copying humann2/tools/rna_dna_norm.py -> build/lib/humann2/tools copying humann2/tools/humann2_barplot.py -> build/lib/humann2/tools copying humann2/tools/humann2_associate.py -> build/lib/humann2/tools copying humann2/tools/humann2_databases.py -> build/lib/humann2/tools copying humann2/tools/merge_abundance.py -> build/lib/humann2/tools copying humann2/tools/join_tables.py -> build/lib/humann2/tools copying humann2/tools/humann2_expand_results_taxonomy.py -> build/lib/humann2/tools copying humann2/tools/humann2_config.py -> build/lib/humann2/tools copying humann2/tools/strain_profiler.py -> build/lib/humann2/tools copying humann2/tools/util.py -> build/lib/humann2/tools copying humann2/tools/humann2_benchmark.py -> build/lib/humann2/tools copying humann2/tools/split_stratified_table.py -> build/lib/humann2/tools copying humann2/tools/regroup_table.py -> build/lib/humann2/tools copying humann2/tools/renorm_table.py -> build/lib/humann2/tools copying humann2/tools/split_table.py -> build/lib/humann2/tools copying humann2/tools/build_custom_database.py -> build/lib/humann2/tools copying humann2/tools/reduce_table.py -> build/lib/humann2/tools copying humann2/tools/__init__.py -> build/lib/humann2/tools copying humann2/tools/humann2_humann1_kegg.py -> build/lib/humann2/tools copying humann2/tools/infer_taxonomy.py -> build/lib/humann2/tools copying humann2/tools/genefamilies_genus_level.py -> build/lib/humann2/tools creating build/lib/humann2/search copying humann2/search/prescreen.py -> build/lib/humann2/search copying humann2/search/pick_frames.py -> build/lib/humann2/search copying humann2/search/blastx_coverage.py -> build/lib/humann2/search copying humann2/search/nucleotide.py -> build/lib/humann2/search copying humann2/search/__init__.py -> build/lib/humann2/search copying humann2/search/translated.py -> build/lib/humann2/search copying humann2/humann2.cfg -> build/lib/humann2 creating build/lib/humann2/data creating build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_structured -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/lib/humann2/data/pathways copying humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_structured_filtered -> build/lib/humann2/data/pathways copying humann2/data/pathways/unipathway_pathways -> build/lib/humann2/data/pathways copying humann2/data/pathways/metacyc_pathways_to_organisms -> build/lib/humann2/data/pathways creating build/lib/humann2/data/misc copying humann2/data/misc/map_level4ec_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_eggnog_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_pfam_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/lib/humann2/data/misc copying humann2/data/misc/map_transporter_uniref50.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_uniref50_name.txt.bz2 -> build/lib/humann2/data/misc copying humann2/data/misc/README.txt -> build/lib/humann2/data/misc copying humann2/data/misc/map_ko_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/lib/humann2/data/misc copying humann2/data/misc/map_go_name.txt.gz -> build/lib/humann2/data/misc creating build/lib/humann2/data/uniref_DEMO copying humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/lib/humann2/data/uniref_DEMO copying humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/lib/humann2/data/uniref_DEMO creating build/lib/humann2/data/chocophlan_DEMO copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO copying humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/lib/humann2/data/chocophlan_DEMO creating build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo_pathabundance_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/genefamilies_biom_match.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/reactions.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/file_without_header.sam -> build/lib/humann2/tests/data copying humann2/tests/data/usearch_with_uniref50_output.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/file_single_line_sequences.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_with_header.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/annotations.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/gene_families.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.sam -> build/lib/humann2/tests/data copying humann2/tests/data/file_with_header.sam -> build/lib/humann2/tests/data copying humann2/tests/data/file_no_space_identifier.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/file.bam -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways_results.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping_gene_table.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/annotations.sam -> build/lib/humann2/tests/data copying humann2/tests/data/id_mapping_coverage_filter.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways.dat -> build/lib/humann2/tests/data copying humann2/tests/data/file_space_identifier.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_at_character.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/small_map_uniref50_name.txt.gz -> build/lib/humann2/tests/data copying humann2/tests/data/test_pathways_flat.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/demo.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/demo_genefamilies_with_names.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/lib/humann2/tests/data copying humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_genefamilies.biom -> build/lib/humann2/tests/data copying humann2/tests/data/2_aligned_3_unaligned.sam -> build/lib/humann2/tests/data copying humann2/tests/data/usearch_output.tsv -> build/lib/humann2/tests/data copying humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_multiline.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/file.fasta -> build/lib/humann2/tests/data copying humann2/tests/data/file.fastq -> build/lib/humann2/tests/data copying humann2/tests/data/file_without_header_with_tags.sam -> build/lib/humann2/tests/data copying humann2/tests/data/convert_file_pick_frames.fasta -> build/lib/humann2/tests/data creating build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm copying humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/lib/humann2/tests/data/tooltest-rna_dna_norm creating build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/lib/humann2/tests/data/tooltest-renorm_table copying humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/lib/humann2/tests/data/tooltest-renorm_table creating build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy copying humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/lib/humann2/tests/data/tooltest-infer_taxonomy creating build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/lib/humann2/tests/data/tooltest-rename_table copying humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/lib/humann2/tests/data/tooltest-rename_table creating build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/lib/humann2/tests/data/tooltest-regroup_table copying humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/lib/humann2/tests/data/tooltest-regroup_table creating build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/lib/humann2/tests/data/tooltest-strain_profiler copying humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/lib/humann2/tests/data/tooltest-strain_profiler creating build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables copying humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/lib/humann2/tests/data/tooltest-merge_abundance_tables installing to build/bdist.linux-armv7l/wheel running install Downloading counter file to track humann2 downloads since the global PyPI download stats are currently turned off. Downloading http://bitbucket.org/biobakery/humann2/downloads/counter.txt WARNING: Unable to download http://bitbucket.org/biobakery/humann2/downloads/counter.txt Installing minpath. 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12.31 MB 12.32 MB 12.33 MB 12.34 MB 12.34 MB 12.35 MB 12.36 MB 12.37 MB 12.38 MB 12.38 MB 12.39 MB 12.40 MB 12.41 MB 12.41 MB 12.42 MB 12.43 MB 12.44 MB 12.45 MB 12.45 MB 12.46 MB 12.47 MB 12.48 MB 12.48 MB 12.49 MB 12.50 MB 12.51 MB 12.52 MB 12.52 MB 12.53 MB 12.54 MB 12.55 MB 12.55 MB 12.56 MB 12.57 MB 12.58 MB 12.59 MB 12.59 MB 12.60 MB 12.61 MB 12.62 MB 12.62 MB 12.63 MB 12.64 MB 12.65 MB 12.66 MB 12.66 MB 12.67 MB 12.68 MB 12.69 MB 12.70 MB 12.70 MB 12.71 MB 12.72 MB 12.73 MB 12.73 MB 12.74 MB running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/humann2 copying build/lib/humann2/check.py -> build/bdist.linux-armv7l/wheel/humann2 copying build/lib/humann2/config.py -> build/bdist.linux-armv7l/wheel/humann2 copying build/lib/humann2/humann2.cfg -> build/bdist.linux-armv7l/wheel/humann2 creating build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/modules.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/xipe.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/families.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/chi2cdf.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/quantify/MinPath12hmp.py -> build/bdist.linux-armv7l/wheel/humann2/quantify copying build/lib/humann2/humann2.py -> build/bdist.linux-armv7l/wheel/humann2 copying build/lib/humann2/store.py -> build/bdist.linux-armv7l/wheel/humann2 creating build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/cfg.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_quantify_modules.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_quantify_families.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_store.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_biom_tools.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/humann2_test.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_humann2.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/utils.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_tools.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/functional_tests_biom_humann2.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_store.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/advanced_tests_translated_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/basic_tests_utilities.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/tests creating build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm copying build/lib/humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rna_dna_norm creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-renorm_table copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_pathabundance_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-infer_taxonomy copying build/lib/humann2/tests/data/genefamilies_biom_match.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/reactions.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_without_header.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/usearch_with_uniref50_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_single_line_sequences.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-rename_table copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_with_header.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample1.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/gene_families_uniref50_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/annotations.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/gene_families.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_with_header.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_no_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies_sample2.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-regroup_table copying build/lib/humann2/tests/data/demo_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.bam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/test_pathways_results.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping_gene_table.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/annotations.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/id_mapping_coverage_filter.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-strain_profiler copying build/lib/humann2/tests/data/test_pathways.dat -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_space_identifier.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_at_character.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_pathcoverage_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_with_header_no_log.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/small_map_uniref50_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/test_pathways_flat.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_genefamilies_with_names.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8 -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/demo_metaphlan_bugs_list.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/multi_sample_genefamilies.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/2_aligned_3_unaligned.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/usearch_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data creating build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv -> build/bdist.linux-armv7l/wheel/humann2/tests/data/tooltest-merge_abundance_tables copying build/lib/humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_multiline.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file.fastq -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/file_without_header_with_tags.sam -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/data/convert_file_pick_frames.fasta -> build/bdist.linux-armv7l/wheel/humann2/tests/data copying build/lib/humann2/tests/basic_tests_nucleotide_search.py -> build/bdist.linux-armv7l/wheel/humann2/tests copying build/lib/humann2/__init__.py -> build/bdist.linux-armv7l/wheel/humann2 copying build/lib/humann2/utilities.py -> build/bdist.linux-armv7l/wheel/humann2 creating build/bdist.linux-armv7l/wheel/humann2/data creating build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd -> build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO copying build/lib/humann2/data/uniref_DEMO/uniref90_demo_prots.faa -> build/bdist.linux-armv7l/wheel/humann2/data/uniref_DEMO creating build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_level4ec_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_kegg-mdl_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_metacyc-rxn_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_eggnog_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_kegg-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_pfam_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/KeggOrgId2OrgNameTable.txt -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_transporter_uniref50.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_uniref50_name.txt.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/README.txt -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_ko_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_metacyc-pwy_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc copying build/lib/humann2/data/misc/map_go_name.txt.gz -> build/bdist.linux-armv7l/wheel/humann2/data/misc creating build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_structured -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/unipathway_uniprots.uniref.bz2 -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_structured_filtered -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/unipathway_pathways -> build/bdist.linux-armv7l/wheel/humann2/data/pathways copying build/lib/humann2/data/pathways/metacyc_pathways_to_organisms -> build/bdist.linux-armv7l/wheel/humann2/data/pathways creating build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz -> build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO copying build/lib/humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz -> build/bdist.linux-armv7l/wheel/humann2/data/chocophlan_DEMO creating build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/rename_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/rna_dna_norm.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_barplot.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_associate.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_databases.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/merge_abundance.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/join_tables.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_expand_results_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_config.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/strain_profiler.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/util.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_benchmark.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/split_stratified_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/regroup_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/renorm_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/split_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/build_custom_database.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/reduce_table.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/humann2_humann1_kegg.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/infer_taxonomy.py -> build/bdist.linux-armv7l/wheel/humann2/tools copying build/lib/humann2/tools/genefamilies_genus_level.py -> build/bdist.linux-armv7l/wheel/humann2/tools creating build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/prescreen.py -> build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/pick_frames.py -> build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/blastx_coverage.py -> build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/nucleotide.py -> build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/__init__.py -> build/bdist.linux-armv7l/wheel/humann2/search copying build/lib/humann2/search/translated.py -> build/bdist.linux-armv7l/wheel/humann2/search running install_egg_info running egg_info writing entry points to humann2.egg-info/entry_points.txt writing top-level names to humann2.egg-info/top_level.txt writing humann2.egg-info/PKG-INFO writing dependency_links to humann2.egg-info/dependency_links.txt reading manifest file 'humann2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'humann2/tools/README.txt' warning: no files found matching 'humann2/maintenance/README.md' warning: no files found matching 'humann2/maintenance/metacyc_swissprot_trembl_reference_databases.md' no previously-included directories found matching 'humann2/quantify/MinPath' warning: no previously-included files found matching 'humann2/data/misc/map_EC_to_triplet_AC_U50_U90_Swissprot_and_Trembl.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_infogo1000_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_uniref90_name.txt.bz2' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_go_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_ko_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_level4ec_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_pfam_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref50.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/map_eggnog_uniref90.txt.gz' warning: no previously-included files found matching 'humann2/data/misc/uniref90-tol-lca.dat.bz2' warning: no previously-included files found matching 'humann2/data/misc/uniref50-tol-lca.dat.bz2' writing manifest file 'humann2.egg-info/SOURCES.txt' Copying humann2.egg-info to build/bdist.linux-armv7l/wheel/humann2-2.8.2-py3.4.egg-info running install_scripts Installing latest glpk. Downloading http://ftp.gnu.org/gnu/glpk/glpk-4.55.tar.gz Downloading file of size: 3.27 MB 0.01 MB 0.24 % 23.31 MB/sec 0 min 0 sec 0.02 MB 0.48 % 0.22 MB/sec 0 min 15 sec 0.02 MB 0.72 % 0.32 MB/sec 0 min 10 sec 0.03 MB 0.96 % 0.43 MB/sec 0 min 8 sec 0.04 MB 1.20 % 0.53 MB/sec 0 min 6 sec 0.05 MB 1.44 % 0.32 MB/sec 0 min 10 sec 0.05 MB 1.67 % 0.37 MB/sec 0 min 9 sec 0.06 MB 1.91 % 0.42 MB/sec 0 min 8 sec 0.07 MB 2.15 % 0.47 MB/sec 0 min 7 sec 0.08 MB 2.39 % 0.52 MB/sec 0 min 6 sec 0.09 MB 2.63 % 0.57 MB/sec 0 min 6 sec 0.09 MB 2.87 % 0.62 MB/sec 0 min 5 sec 0.10 MB 3.11 % 0.46 MB/sec 0 min 7 sec 0.11 MB 3.35 % 0.49 MB/sec 0 min 6 sec 0.12 MB 3.59 % 0.53 MB/sec 0 min 6 sec 0.12 MB 3.83 % 0.56 MB/sec 0 min 6 sec 0.13 MB 4.07 % 0.60 MB/sec 0 min 5 sec 0.14 MB 4.31 % 0.63 MB/sec 0 min 5 sec 0.15 MB 4.55 % 0.66 MB/sec 0 min 5 sec 0.16 MB 4.78 % 0.69 MB/sec 0 min 4 sec 0.16 MB 5.02 % 0.73 MB/sec 0 min 4 sec 0.17 MB 5.26 % 0.76 MB/sec 0 min 4 sec 0.18 MB 5.50 % 0.79 MB/sec 0 min 4 sec 0.19 MB 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commands make all-recursive make[1]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55' Making all in src make[2]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c -o libglpk_la-avl.lo `test -f 'avl.c' || echo './'`avl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c avl.c -fPIC -DPIC -o .libs/libglpk_la-avl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-avl.lo -MD -MP -MF .deps/libglpk_la-avl.Tpo -c avl.c -o 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'glpapi02.c' || echo './'`glpapi02.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi02.lo -MD -MP -MF .deps/libglpk_la-glpapi02.Tpo -c glpapi02.c -fPIC -DPIC -o .libs/libglpk_la-glpapi02.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi02.lo -MD -MP -MF .deps/libglpk_la-glpapi02.Tpo -c glpapi02.c -o libglpk_la-glpapi02.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi02.Tpo .deps/libglpk_la-glpapi02.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi03.lo -MD -MP -MF .deps/libglpk_la-glpapi03.Tpo -c -o libglpk_la-glpapi03.lo `test -f 'glpapi03.c' || echo './'`glpapi03.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi03.lo -MD -MP -MF .deps/libglpk_la-glpapi03.Tpo -c glpapi03.c -fPIC -DPIC -o .libs/libglpk_la-glpapi03.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi03.lo -MD -MP -MF .deps/libglpk_la-glpapi03.Tpo -c glpapi03.c -o libglpk_la-glpapi03.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi03.Tpo .deps/libglpk_la-glpapi03.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi04.lo -MD -MP -MF .deps/libglpk_la-glpapi04.Tpo -c -o libglpk_la-glpapi04.lo `test -f 'glpapi04.c' || echo './'`glpapi04.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc 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-I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi07.lo -MD -MP -MF .deps/libglpk_la-glpapi07.Tpo -c glpapi07.c -o libglpk_la-glpapi07.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi07.Tpo .deps/libglpk_la-glpapi07.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi08.lo -MD -MP -MF .deps/libglpk_la-glpapi08.Tpo -c -o libglpk_la-glpapi08.lo `test -f 'glpapi08.c' || echo './'`glpapi08.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi08.lo -MD -MP -MF .deps/libglpk_la-glpapi08.Tpo -c glpapi08.c -fPIC -DPIC -o .libs/libglpk_la-glpapi08.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi08.lo -MD -MP -MF .deps/libglpk_la-glpapi08.Tpo -c glpapi08.c -o libglpk_la-glpapi08.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi08.Tpo .deps/libglpk_la-glpapi08.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi09.lo -MD -MP -MF .deps/libglpk_la-glpapi09.Tpo -c -o libglpk_la-glpapi09.lo `test -f 'glpapi09.c' || echo './'`glpapi09.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi09.lo -MD -MP -MF .deps/libglpk_la-glpapi09.Tpo -c glpapi09.c -fPIC -DPIC -o .libs/libglpk_la-glpapi09.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi09.lo -MD -MP -MF .deps/libglpk_la-glpapi09.Tpo -c glpapi09.c -o libglpk_la-glpapi09.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi09.Tpo .deps/libglpk_la-glpapi09.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi10.lo -MD -MP -MF .deps/libglpk_la-glpapi10.Tpo -c -o libglpk_la-glpapi10.lo `test -f 'glpapi10.c' || echo './'`glpapi10.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi10.lo -MD -MP -MF .deps/libglpk_la-glpapi10.Tpo -c glpapi10.c -fPIC -DPIC -o .libs/libglpk_la-glpapi10.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi10.lo -MD -MP -MF .deps/libglpk_la-glpapi10.Tpo -c glpapi10.c -o libglpk_la-glpapi10.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi10.Tpo .deps/libglpk_la-glpapi10.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi11.lo -MD -MP -MF .deps/libglpk_la-glpapi11.Tpo -c -o libglpk_la-glpapi11.lo `test -f 'glpapi11.c' || echo './'`glpapi11.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi11.lo -MD -MP -MF .deps/libglpk_la-glpapi11.Tpo -c glpapi11.c -fPIC -DPIC -o .libs/libglpk_la-glpapi11.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi11.lo -MD -MP -MF .deps/libglpk_la-glpapi11.Tpo -c glpapi11.c -o libglpk_la-glpapi11.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi11.Tpo .deps/libglpk_la-glpapi11.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi12.lo -MD -MP -MF .deps/libglpk_la-glpapi12.Tpo -c -o libglpk_la-glpapi12.lo `test -f 'glpapi12.c' || echo './'`glpapi12.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi12.lo -MD -MP -MF .deps/libglpk_la-glpapi12.Tpo -c glpapi12.c -fPIC -DPIC -o .libs/libglpk_la-glpapi12.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi12.lo -MD -MP -MF .deps/libglpk_la-glpapi12.Tpo -c glpapi12.c -o libglpk_la-glpapi12.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi12.Tpo .deps/libglpk_la-glpapi12.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi13.lo -MD -MP -MF .deps/libglpk_la-glpapi13.Tpo -c -o libglpk_la-glpapi13.lo `test -f 'glpapi13.c' || echo './'`glpapi13.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi13.lo -MD -MP -MF .deps/libglpk_la-glpapi13.Tpo -c glpapi13.c -fPIC -DPIC -o .libs/libglpk_la-glpapi13.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi13.lo -MD -MP -MF .deps/libglpk_la-glpapi13.Tpo -c glpapi13.c -o libglpk_la-glpapi13.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi13.Tpo .deps/libglpk_la-glpapi13.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi14.lo -MD -MP -MF .deps/libglpk_la-glpapi14.Tpo -c -o libglpk_la-glpapi14.lo `test -f 'glpapi14.c' || echo './'`glpapi14.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi14.lo -MD -MP -MF .deps/libglpk_la-glpapi14.Tpo -c glpapi14.c -fPIC -DPIC -o .libs/libglpk_la-glpapi14.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi14.lo -MD -MP -MF .deps/libglpk_la-glpapi14.Tpo -c glpapi14.c -o libglpk_la-glpapi14.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi14.Tpo .deps/libglpk_la-glpapi14.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi15.lo -MD 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'glpapi16.c' || echo './'`glpapi16.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi16.lo -MD -MP -MF .deps/libglpk_la-glpapi16.Tpo -c glpapi16.c -fPIC -DPIC -o .libs/libglpk_la-glpapi16.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi16.lo -MD -MP -MF .deps/libglpk_la-glpapi16.Tpo -c glpapi16.c -o libglpk_la-glpapi16.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpapi16.Tpo .deps/libglpk_la-glpapi16.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpapi17.lo -MD -MP -MF .deps/libglpk_la-glpapi17.Tpo -c -o libglpk_la-glpapi17.lo `test -f 'glpapi17.c' || echo './'`glpapi17.c libtool: compile: gcc -DHAVE_CONFIG_H -I. 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>/dev/null 2>&1 mv -f .deps/libglpk_la-glpdmx.Tpo .deps/libglpk_la-glpdmx.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpgmp.lo -MD -MP -MF .deps/libglpk_la-glpgmp.Tpo -c -o libglpk_la-glpgmp.lo `test -f 'glpgmp.c' || echo './'`glpgmp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpgmp.lo -MD -MP -MF .deps/libglpk_la-glpgmp.Tpo -c glpgmp.c -fPIC -DPIC -o .libs/libglpk_la-glpgmp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpgmp.lo -MD -MP -MF .deps/libglpk_la-glpgmp.Tpo -c glpgmp.c -o libglpk_la-glpgmp.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpgmp.Tpo .deps/libglpk_la-glpgmp.Plo /bin/bash ../libtool --tag=CC 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'glpssx02.c' || echo './'`glpssx02.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpssx02.lo -MD -MP -MF .deps/libglpk_la-glpssx02.Tpo -c glpssx02.c -fPIC -DPIC -o .libs/libglpk_la-glpssx02.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glpssx02.lo -MD -MP -MF .deps/libglpk_la-glpssx02.Tpo -c glpssx02.c -o libglpk_la-glpssx02.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glpssx02.Tpo .deps/libglpk_la-glpssx02.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glptsp.lo -MD -MP -MF .deps/libglpk_la-glptsp.Tpo -c -o libglpk_la-glptsp.lo `test -f 'glptsp.c' || echo './'`glptsp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glptsp.lo -MD -MP -MF .deps/libglpk_la-glptsp.Tpo -c glptsp.c -fPIC -DPIC -o .libs/libglpk_la-glptsp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-glptsp.lo -MD -MP -MF .deps/libglpk_la-glptsp.Tpo -c glptsp.c -o libglpk_la-glptsp.o >/dev/null 2>&1 mv -f .deps/libglpk_la-glptsp.Tpo .deps/libglpk_la-glptsp.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lux.lo -MD -MP -MF .deps/libglpk_la-lux.Tpo -c -o libglpk_la-lux.lo `test -f 'lux.c' || echo './'`lux.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lux.lo -MD -MP -MF .deps/libglpk_la-lux.Tpo -c lux.c -fPIC -DPIC -o .libs/libglpk_la-lux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lux.lo -MD -MP -MF .deps/libglpk_la-lux.Tpo -c lux.c -o libglpk_la-lux.o >/dev/null 2>&1 mv -f .deps/libglpk_la-lux.Tpo .deps/libglpk_la-lux.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_1.lo -MD -MP -MF .deps/libglpk_la-amd_1.Tpo -c -o libglpk_la-amd_1.lo `test -f 'amd/amd_1.c' || echo './'`amd/amd_1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_1.lo -MD -MP -MF .deps/libglpk_la-amd_1.Tpo -c amd/amd_1.c -fPIC -DPIC -o .libs/libglpk_la-amd_1.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_1.lo -MD -MP -MF .deps/libglpk_la-amd_1.Tpo -c amd/amd_1.c -o libglpk_la-amd_1.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_1.Tpo .deps/libglpk_la-amd_1.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c -o libglpk_la-amd_2.lo `test -f 'amd/amd_2.c' || echo './'`amd/amd_2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c amd/amd_2.c -fPIC -DPIC -o .libs/libglpk_la-amd_2.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_2.lo -MD -MP -MF .deps/libglpk_la-amd_2.Tpo -c amd/amd_2.c -o libglpk_la-amd_2.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_2.Tpo .deps/libglpk_la-amd_2.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c -o libglpk_la-amd_aat.lo `test -f 'amd/amd_aat.c' || echo './'`amd/amd_aat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c amd/amd_aat.c -fPIC -DPIC -o .libs/libglpk_la-amd_aat.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_aat.lo -MD -MP -MF .deps/libglpk_la-amd_aat.Tpo -c amd/amd_aat.c -o libglpk_la-amd_aat.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_aat.Tpo .deps/libglpk_la-amd_aat.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c -o libglpk_la-amd_control.lo `test -f 'amd/amd_control.c' || echo './'`amd/amd_control.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c amd/amd_control.c -fPIC -DPIC -o .libs/libglpk_la-amd_control.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_control.lo -MD -MP -MF .deps/libglpk_la-amd_control.Tpo -c amd/amd_control.c -o libglpk_la-amd_control.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_control.Tpo .deps/libglpk_la-amd_control.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_defaults.lo -MD -MP -MF .deps/libglpk_la-amd_defaults.Tpo -c -o libglpk_la-amd_defaults.lo `test -f 'amd/amd_defaults.c' || echo './'`amd/amd_defaults.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_defaults.lo -MD -MP -MF .deps/libglpk_la-amd_defaults.Tpo -c amd/amd_defaults.c -fPIC -DPIC -o .libs/libglpk_la-amd_defaults.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_defaults.lo -MD -MP -MF .deps/libglpk_la-amd_defaults.Tpo -c amd/amd_defaults.c -o libglpk_la-amd_defaults.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_defaults.Tpo .deps/libglpk_la-amd_defaults.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_dump.lo -MD -MP -MF .deps/libglpk_la-amd_dump.Tpo -c -o libglpk_la-amd_dump.lo `test -f 'amd/amd_dump.c' || echo './'`amd/amd_dump.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_dump.lo -MD -MP -MF .deps/libglpk_la-amd_dump.Tpo -c amd/amd_dump.c -fPIC -DPIC -o .libs/libglpk_la-amd_dump.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_dump.lo -MD -MP -MF .deps/libglpk_la-amd_dump.Tpo -c amd/amd_dump.c -o libglpk_la-amd_dump.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_dump.Tpo .deps/libglpk_la-amd_dump.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c -o libglpk_la-amd_info.lo `test -f 'amd/amd_info.c' || echo './'`amd/amd_info.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c amd/amd_info.c -fPIC -DPIC -o .libs/libglpk_la-amd_info.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_info.lo -MD -MP -MF .deps/libglpk_la-amd_info.Tpo -c amd/amd_info.c -o libglpk_la-amd_info.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_info.Tpo .deps/libglpk_la-amd_info.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c -o libglpk_la-amd_order.lo `test -f 'amd/amd_order.c' || echo './'`amd/amd_order.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c amd/amd_order.c -fPIC -DPIC -o .libs/libglpk_la-amd_order.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_order.lo -MD -MP -MF .deps/libglpk_la-amd_order.Tpo -c amd/amd_order.c -o libglpk_la-amd_order.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_order.Tpo .deps/libglpk_la-amd_order.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c -o libglpk_la-amd_post_tree.lo `test -f 'amd/amd_post_tree.c' || echo './'`amd/amd_post_tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -fPIC -DPIC -o .libs/libglpk_la-amd_post_tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_post_tree.lo -MD -MP -MF .deps/libglpk_la-amd_post_tree.Tpo -c amd/amd_post_tree.c -o libglpk_la-amd_post_tree.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_post_tree.Tpo .deps/libglpk_la-amd_post_tree.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c -o libglpk_la-amd_postorder.lo `test -f 'amd/amd_postorder.c' || echo './'`amd/amd_postorder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c amd/amd_postorder.c -fPIC -DPIC -o .libs/libglpk_la-amd_postorder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_postorder.lo -MD -MP -MF .deps/libglpk_la-amd_postorder.Tpo -c amd/amd_postorder.c -o libglpk_la-amd_postorder.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_postorder.Tpo .deps/libglpk_la-amd_postorder.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_preprocess.lo -MD -MP -MF .deps/libglpk_la-amd_preprocess.Tpo -c -o libglpk_la-amd_preprocess.lo `test -f 'amd/amd_preprocess.c' || echo './'`amd/amd_preprocess.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_preprocess.lo -MD -MP -MF .deps/libglpk_la-amd_preprocess.Tpo -c amd/amd_preprocess.c -fPIC -DPIC -o .libs/libglpk_la-amd_preprocess.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_preprocess.lo -MD -MP -MF .deps/libglpk_la-amd_preprocess.Tpo -c amd/amd_preprocess.c -o libglpk_la-amd_preprocess.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_preprocess.Tpo .deps/libglpk_la-amd_preprocess.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c -o libglpk_la-amd_valid.lo `test -f 'amd/amd_valid.c' || echo './'`amd/amd_valid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -fPIC -DPIC -o .libs/libglpk_la-amd_valid.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-amd_valid.lo -MD -MP -MF .deps/libglpk_la-amd_valid.Tpo -c amd/amd_valid.c -o libglpk_la-amd_valid.o >/dev/null 2>&1 mv -f .deps/libglpk_la-amd_valid.Tpo .deps/libglpk_la-amd_valid.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c -o libglpk_la-btf.lo `test -f 'bflib/btf.c' || echo './'`bflib/btf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -fPIC -DPIC -o .libs/libglpk_la-btf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btf.lo -MD -MP -MF .deps/libglpk_la-btf.Tpo -c bflib/btf.c -o libglpk_la-btf.o >/dev/null 2>&1 mv -f .deps/libglpk_la-btf.Tpo .deps/libglpk_la-btf.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-btfint.lo 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-I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-fhvint.lo -MD -MP -MF .deps/libglpk_la-fhvint.Tpo -c bflib/fhvint.c -fPIC -DPIC -o .libs/libglpk_la-fhvint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-fhvint.lo -MD -MP -MF .deps/libglpk_la-fhvint.Tpo -c bflib/fhvint.c -o libglpk_la-fhvint.o >/dev/null 2>&1 mv -f .deps/libglpk_la-fhvint.Tpo .deps/libglpk_la-fhvint.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c -o libglpk_la-ifu.lo `test -f 'bflib/ifu.c' || echo './'`bflib/ifu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c bflib/ifu.c -fPIC -DPIC -o .libs/libglpk_la-ifu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-ifu.lo -MD -MP -MF .deps/libglpk_la-ifu.Tpo -c bflib/ifu.c -o libglpk_la-ifu.o >/dev/null 2>&1 mv -f .deps/libglpk_la-ifu.Tpo .deps/libglpk_la-ifu.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-luf.lo -MD -MP -MF .deps/libglpk_la-luf.Tpo -c -o libglpk_la-luf.lo `test -f 'bflib/luf.c' || echo './'`bflib/luf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-luf.lo -MD -MP -MF .deps/libglpk_la-luf.Tpo -c bflib/luf.c -fPIC -DPIC -o .libs/libglpk_la-luf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-luf.lo -MD -MP -MF .deps/libglpk_la-luf.Tpo -c bflib/luf.c -o libglpk_la-luf.o >/dev/null 2>&1 mv -f .deps/libglpk_la-luf.Tpo .deps/libglpk_la-luf.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lufint.lo -MD -MP -MF .deps/libglpk_la-lufint.Tpo -c -o libglpk_la-lufint.lo `test -f 'bflib/lufint.c' || echo './'`bflib/lufint.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-lufint.lo -MD -MP -MF .deps/libglpk_la-lufint.Tpo -c bflib/lufint.c -fPIC -DPIC -o .libs/libglpk_la-lufint.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT 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--mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c -o libglpk_la-sgf.lo `test -f 'bflib/sgf.c' || echo './'`bflib/sgf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c bflib/sgf.c -fPIC -DPIC -o .libs/libglpk_la-sgf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-sgf.lo -MD -MP -MF .deps/libglpk_la-sgf.Tpo -c bflib/sgf.c -o libglpk_la-sgf.o >/dev/null 2>&1 mv -f .deps/libglpk_la-sgf.Tpo .deps/libglpk_la-sgf.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy 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'./'`cglib/cfg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg.lo -MD -MP -MF .deps/libglpk_la-cfg.Tpo -c cglib/cfg.c -fPIC -DPIC -o .libs/libglpk_la-cfg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg.lo -MD -MP -MF .deps/libglpk_la-cfg.Tpo -c cglib/cfg.c -o libglpk_la-cfg.o >/dev/null 2>&1 mv -f .deps/libglpk_la-cfg.Tpo .deps/libglpk_la-cfg.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-cfg1.lo -MD -MP -MF .deps/libglpk_la-cfg1.Tpo -c -o libglpk_la-cfg1.lo `test -f 'cglib/cfg1.c' || echo './'`cglib/cfg1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env 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-I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-dlsup.lo -MD -MP -MF .deps/libglpk_la-dlsup.Tpo -c env/dlsup.c -o libglpk_la-dlsup.o >/dev/null 2>&1 mv -f .deps/libglpk_la-dlsup.Tpo .deps/libglpk_la-dlsup.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-env.lo -MD -MP -MF .deps/libglpk_la-env.Tpo -c -o libglpk_la-env.lo `test -f 'env/env.c' || echo './'`env/env.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-env.lo -MD -MP -MF .deps/libglpk_la-env.Tpo -c env/env.c -fPIC -DPIC -o .libs/libglpk_la-env.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-env.lo -MD -MP -MF .deps/libglpk_la-env.Tpo -c env/env.c -o 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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-qmd.lo -MD -MP -MF .deps/libglpk_la-qmd.Tpo -c misc/qmd.c -o libglpk_la-qmd.o >/dev/null 2>&1 mv -f .deps/libglpk_la-qmd.Tpo .deps/libglpk_la-qmd.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-relax4.lo -MD -MP -MF .deps/libglpk_la-relax4.Tpo -c -o libglpk_la-relax4.lo `test -f 'misc/relax4.c' || echo './'`misc/relax4.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-relax4.lo -MD -MP -MF .deps/libglpk_la-relax4.Tpo -c misc/relax4.c -fPIC -DPIC -o .libs/libglpk_la-relax4.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env 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../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c -o libglpk_la-round2n.lo `test -f 'misc/round2n.c' || echo './'`misc/round2n.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c misc/round2n.c -fPIC -DPIC -o .libs/libglpk_la-round2n.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-round2n.lo -MD -MP -MF .deps/libglpk_la-round2n.Tpo -c misc/round2n.c -o libglpk_la-round2n.o >/dev/null 2>&1 mv -f .deps/libglpk_la-round2n.Tpo .deps/libglpk_la-round2n.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c -o libglpk_la-str2int.lo `test -f 'misc/str2int.c' || echo './'`misc/str2int.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c misc/str2int.c -fPIC -DPIC -o .libs/libglpk_la-str2int.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2int.lo -MD -MP -MF .deps/libglpk_la-str2int.Tpo -c misc/str2int.c -o libglpk_la-str2int.o >/dev/null 2>&1 mv -f .deps/libglpk_la-str2int.Tpo .deps/libglpk_la-str2int.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c -o libglpk_la-str2num.lo `test -f 'misc/str2num.c' || echo './'`misc/str2num.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c misc/str2num.c -fPIC -DPIC -o .libs/libglpk_la-str2num.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-str2num.lo -MD -MP -MF .deps/libglpk_la-str2num.Tpo -c misc/str2num.c -o libglpk_la-str2num.o >/dev/null 2>&1 mv -f .deps/libglpk_la-str2num.Tpo .deps/libglpk_la-str2num.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-strspx.lo -MD -MP -MF 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-I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-proxy1.lo -MD -MP -MF .deps/libglpk_la-proxy1.Tpo -c proxy/proxy1.c -o libglpk_la-proxy1.o >/dev/null 2>&1 mv -f .deps/libglpk_la-proxy1.Tpo .deps/libglpk_la-proxy1.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-adler32.lo -MD -MP -MF .deps/libglpk_la-adler32.Tpo -c -o libglpk_la-adler32.lo `test -f 'zlib/adler32.c' || echo './'`zlib/adler32.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-adler32.lo -MD -MP -MF .deps/libglpk_la-adler32.Tpo -c zlib/adler32.c -fPIC -DPIC -o .libs/libglpk_la-adler32.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-adler32.lo -MD -MP -MF .deps/libglpk_la-adler32.Tpo -c zlib/adler32.c -o libglpk_la-adler32.o >/dev/null 2>&1 mv -f .deps/libglpk_la-adler32.Tpo .deps/libglpk_la-adler32.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-compress.lo -MD -MP -MF .deps/libglpk_la-compress.Tpo -c -o libglpk_la-compress.lo `test -f 'zlib/compress.c' || echo './'`zlib/compress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-compress.lo -MD -MP -MF .deps/libglpk_la-compress.Tpo -c zlib/compress.c -fPIC -DPIC -o .libs/libglpk_la-compress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-compress.lo -MD -MP -MF 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../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzclose.lo -MD -MP -MF .deps/libglpk_la-gzclose.Tpo -c -o libglpk_la-gzclose.lo `test -f 'zlib/gzclose.c' || echo './'`zlib/gzclose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzclose.lo -MD -MP -MF .deps/libglpk_la-gzclose.Tpo -c zlib/gzclose.c -fPIC -DPIC -o .libs/libglpk_la-gzclose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzclose.lo -MD -MP -MF .deps/libglpk_la-gzclose.Tpo -c zlib/gzclose.c -o libglpk_la-gzclose.o >/dev/null 2>&1 mv -f .deps/libglpk_la-gzclose.Tpo .deps/libglpk_la-gzclose.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzlib.lo -MD -MP -MF .deps/libglpk_la-gzlib.Tpo -c -o libglpk_la-gzlib.lo `test -f 'zlib/gzlib.c' || echo './'`zlib/gzlib.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzlib.lo -MD -MP -MF .deps/libglpk_la-gzlib.Tpo -c zlib/gzlib.c -fPIC -DPIC -o .libs/libglpk_la-gzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-gzlib.lo -MD -MP -MF .deps/libglpk_la-gzlib.Tpo -c zlib/gzlib.c -o libglpk_la-gzlib.o >/dev/null 2>&1 mv -f .deps/libglpk_la-gzlib.Tpo .deps/libglpk_la-gzlib.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT 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'./'`zlib/inffast.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inffast.lo -MD -MP -MF .deps/libglpk_la-inffast.Tpo -c zlib/inffast.c -fPIC -DPIC -o .libs/libglpk_la-inffast.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inffast.lo -MD -MP -MF .deps/libglpk_la-inffast.Tpo -c zlib/inffast.c -o libglpk_la-inffast.o >/dev/null 2>&1 mv -f .deps/libglpk_la-inffast.Tpo .deps/libglpk_la-inffast.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-inflate.lo -MD -MP -MF .deps/libglpk_la-inflate.Tpo -c -o libglpk_la-inflate.lo `test -f 'zlib/inflate.c' || echo './'`zlib/inflate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. 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.deps/libglpk_la-trees.Tpo -c zlib/trees.c -fPIC -DPIC -o .libs/libglpk_la-trees.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-trees.lo -MD -MP -MF .deps/libglpk_la-trees.Tpo -c zlib/trees.c -o libglpk_la-trees.o >/dev/null 2>&1 mv -f .deps/libglpk_la-trees.Tpo .deps/libglpk_la-trees.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c -o libglpk_la-uncompr.lo `test -f 'zlib/uncompr.c' || echo './'`zlib/uncompr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -fPIC -DPIC -o .libs/libglpk_la-uncompr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-uncompr.lo -MD -MP -MF .deps/libglpk_la-uncompr.Tpo -c zlib/uncompr.c -o libglpk_la-uncompr.o >/dev/null 2>&1 mv -f .deps/libglpk_la-uncompr.Tpo .deps/libglpk_la-uncompr.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c -o libglpk_la-zio.lo `test -f 'zlib/zio.c' || echo './'`zlib/zio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -fPIC -DPIC -o .libs/libglpk_la-zio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zio.lo -MD -MP -MF .deps/libglpk_la-zio.Tpo -c zlib/zio.c -o libglpk_la-zio.o >/dev/null 2>&1 mv -f .deps/libglpk_la-zio.Tpo .deps/libglpk_la-zio.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c -o libglpk_la-zutil.lo `test -f 'zlib/zutil.c' || echo './'`zlib/zutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -fPIC -DPIC -o .libs/libglpk_la-zutil.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./amd -I./bflib -I./cglib -I./colamd -I./env -I./minisat -I./misc -I./proxy -I./zlib -g -O2 -MT libglpk_la-zutil.lo -MD -MP -MF .deps/libglpk_la-zutil.Tpo -c zlib/zutil.c -o libglpk_la-zutil.o >/dev/null 2>&1 mv -f .deps/libglpk_la-zutil.Tpo .deps/libglpk_la-zutil.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -version-info 37:2:1 -export-symbols-regex '^glp_*' -o libglpk.la -rpath /usr/lib libglpk_la-avl.lo libglpk_la-bfd.lo libglpk_la-bfx.lo libglpk_la-glpapi01.lo libglpk_la-glpapi02.lo libglpk_la-glpapi03.lo libglpk_la-glpapi04.lo libglpk_la-glpapi05.lo libglpk_la-glpapi06.lo libglpk_la-glpapi07.lo libglpk_la-glpapi08.lo libglpk_la-glpapi09.lo libglpk_la-glpapi10.lo libglpk_la-glpapi11.lo libglpk_la-glpapi12.lo libglpk_la-glpapi13.lo libglpk_la-glpapi14.lo libglpk_la-glpapi15.lo libglpk_la-glpapi16.lo libglpk_la-glpapi17.lo libglpk_la-glpapi18.lo libglpk_la-glpapi19.lo libglpk_la-glpapi20.lo libglpk_la-glpapi21.lo libglpk_la-glpcpx.lo libglpk_la-glpdmx.lo libglpk_la-glpgmp.lo libglpk_la-glphbm.lo libglpk_la-glpini01.lo libglpk_la-glpini02.lo libglpk_la-glpios01.lo libglpk_la-glpios02.lo libglpk_la-glpios03.lo libglpk_la-glpios04.lo libglpk_la-glpios05.lo libglpk_la-glpios06.lo libglpk_la-glpios07.lo libglpk_la-glpios08.lo libglpk_la-glpios09.lo libglpk_la-glpios10.lo libglpk_la-glpios11.lo libglpk_la-glpios12.lo libglpk_la-glpipm.lo libglpk_la-glpmat.lo libglpk_la-glpmpl01.lo libglpk_la-glpmpl02.lo libglpk_la-glpmpl03.lo libglpk_la-glpmpl04.lo libglpk_la-glpmpl05.lo libglpk_la-glpmpl06.lo libglpk_la-glpmps.lo libglpk_la-glpnet03.lo libglpk_la-glpnet04.lo libglpk_la-glpnet05.lo libglpk_la-glpnpp01.lo libglpk_la-glpnpp02.lo libglpk_la-glpnpp03.lo libglpk_la-glpnpp04.lo libglpk_la-glpnpp05.lo libglpk_la-glpnpp06.lo libglpk_la-glprgr.lo libglpk_la-glpscl.lo libglpk_la-glpsdf.lo libglpk_la-glpspm.lo libglpk_la-glpspx01.lo libglpk_la-glpspx02.lo libglpk_la-glpsql.lo libglpk_la-glpssx01.lo libglpk_la-glpssx02.lo libglpk_la-glptsp.lo libglpk_la-lux.lo libglpk_la-amd_1.lo libglpk_la-amd_2.lo libglpk_la-amd_aat.lo libglpk_la-amd_control.lo libglpk_la-amd_defaults.lo libglpk_la-amd_dump.lo libglpk_la-amd_info.lo libglpk_la-amd_order.lo libglpk_la-amd_post_tree.lo libglpk_la-amd_postorder.lo libglpk_la-amd_preprocess.lo libglpk_la-amd_valid.lo libglpk_la-btf.lo libglpk_la-btfint.lo libglpk_la-fhv.lo libglpk_la-fhvint.lo libglpk_la-ifu.lo libglpk_la-luf.lo libglpk_la-lufint.lo libglpk_la-scf.lo libglpk_la-scfint.lo libglpk_la-sgf.lo libglpk_la-sva.lo libglpk_la-cfg.lo libglpk_la-cfg1.lo libglpk_la-colamd.lo libglpk_la-alloc.lo libglpk_la-dlsup.lo libglpk_la-env.lo libglpk_la-error.lo libglpk_la-stdout.lo libglpk_la-stream.lo libglpk_la-time.lo libglpk_la-tls.lo libglpk_la-minisat.lo libglpk_la-bignum.lo libglpk_la-dmp.lo libglpk_la-ffalg.lo libglpk_la-fp2rat.lo libglpk_la-gcd.lo libglpk_la-jd.lo libglpk_la-keller.lo libglpk_la-mc13d.lo libglpk_la-mc21a.lo libglpk_la-okalg.lo libglpk_la-qmd.lo libglpk_la-relax4.lo libglpk_la-rng.lo libglpk_la-rng1.lo libglpk_la-round2n.lo libglpk_la-str2int.lo libglpk_la-str2num.lo libglpk_la-strspx.lo libglpk_la-strtrim.lo libglpk_la-triang.lo libglpk_la-wclique.lo libglpk_la-wclique1.lo libglpk_la-proxy.lo libglpk_la-proxy1.lo libglpk_la-adler32.lo libglpk_la-compress.lo libglpk_la-crc32.lo libglpk_la-deflate.lo libglpk_la-gzclose.lo libglpk_la-gzlib.lo libglpk_la-gzread.lo libglpk_la-gzwrite.lo libglpk_la-inffast.lo libglpk_la-inflate.lo libglpk_la-inftrees.lo libglpk_la-trees.lo libglpk_la-uncompr.lo libglpk_la-zio.lo libglpk_la-zutil.lo -lm libtool: link: /usr/bin/nm -B .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o | sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' | /bin/sed 's/.* //' | sort | uniq > .libs/libglpk.exp libtool: link: /bin/grep -E -e "^glp_*" ".libs/libglpk.exp" > ".libs/libglpk.expT" libtool: link: mv -f ".libs/libglpk.expT" ".libs/libglpk.exp" libtool: link: echo "{ global:" > .libs/libglpk.ver libtool: link: cat .libs/libglpk.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libglpk.ver libtool: link: echo "local: *; };" >> .libs/libglpk.ver libtool: link: gcc -shared -fPIC -DPIC .libs/libglpk_la-avl.o .libs/libglpk_la-bfd.o .libs/libglpk_la-bfx.o .libs/libglpk_la-glpapi01.o .libs/libglpk_la-glpapi02.o .libs/libglpk_la-glpapi03.o .libs/libglpk_la-glpapi04.o .libs/libglpk_la-glpapi05.o .libs/libglpk_la-glpapi06.o .libs/libglpk_la-glpapi07.o .libs/libglpk_la-glpapi08.o .libs/libglpk_la-glpapi09.o .libs/libglpk_la-glpapi10.o .libs/libglpk_la-glpapi11.o .libs/libglpk_la-glpapi12.o .libs/libglpk_la-glpapi13.o .libs/libglpk_la-glpapi14.o .libs/libglpk_la-glpapi15.o .libs/libglpk_la-glpapi16.o .libs/libglpk_la-glpapi17.o .libs/libglpk_la-glpapi18.o .libs/libglpk_la-glpapi19.o .libs/libglpk_la-glpapi20.o .libs/libglpk_la-glpapi21.o .libs/libglpk_la-glpcpx.o .libs/libglpk_la-glpdmx.o .libs/libglpk_la-glpgmp.o .libs/libglpk_la-glphbm.o .libs/libglpk_la-glpini01.o .libs/libglpk_la-glpini02.o .libs/libglpk_la-glpios01.o .libs/libglpk_la-glpios02.o .libs/libglpk_la-glpios03.o .libs/libglpk_la-glpios04.o .libs/libglpk_la-glpios05.o .libs/libglpk_la-glpios06.o .libs/libglpk_la-glpios07.o .libs/libglpk_la-glpios08.o .libs/libglpk_la-glpios09.o .libs/libglpk_la-glpios10.o .libs/libglpk_la-glpios11.o .libs/libglpk_la-glpios12.o .libs/libglpk_la-glpipm.o .libs/libglpk_la-glpmat.o .libs/libglpk_la-glpmpl01.o .libs/libglpk_la-glpmpl02.o .libs/libglpk_la-glpmpl03.o .libs/libglpk_la-glpmpl04.o .libs/libglpk_la-glpmpl05.o .libs/libglpk_la-glpmpl06.o .libs/libglpk_la-glpmps.o .libs/libglpk_la-glpnet03.o .libs/libglpk_la-glpnet04.o .libs/libglpk_la-glpnet05.o .libs/libglpk_la-glpnpp01.o .libs/libglpk_la-glpnpp02.o .libs/libglpk_la-glpnpp03.o .libs/libglpk_la-glpnpp04.o .libs/libglpk_la-glpnpp05.o .libs/libglpk_la-glpnpp06.o .libs/libglpk_la-glprgr.o .libs/libglpk_la-glpscl.o .libs/libglpk_la-glpsdf.o .libs/libglpk_la-glpspm.o .libs/libglpk_la-glpspx01.o .libs/libglpk_la-glpspx02.o .libs/libglpk_la-glpsql.o .libs/libglpk_la-glpssx01.o .libs/libglpk_la-glpssx02.o .libs/libglpk_la-glptsp.o .libs/libglpk_la-lux.o .libs/libglpk_la-amd_1.o .libs/libglpk_la-amd_2.o .libs/libglpk_la-amd_aat.o .libs/libglpk_la-amd_control.o .libs/libglpk_la-amd_defaults.o .libs/libglpk_la-amd_dump.o .libs/libglpk_la-amd_info.o .libs/libglpk_la-amd_order.o .libs/libglpk_la-amd_post_tree.o .libs/libglpk_la-amd_postorder.o .libs/libglpk_la-amd_preprocess.o .libs/libglpk_la-amd_valid.o .libs/libglpk_la-btf.o .libs/libglpk_la-btfint.o .libs/libglpk_la-fhv.o .libs/libglpk_la-fhvint.o .libs/libglpk_la-ifu.o .libs/libglpk_la-luf.o .libs/libglpk_la-lufint.o .libs/libglpk_la-scf.o .libs/libglpk_la-scfint.o .libs/libglpk_la-sgf.o .libs/libglpk_la-sva.o .libs/libglpk_la-cfg.o .libs/libglpk_la-cfg1.o .libs/libglpk_la-colamd.o .libs/libglpk_la-alloc.o .libs/libglpk_la-dlsup.o .libs/libglpk_la-env.o .libs/libglpk_la-error.o .libs/libglpk_la-stdout.o .libs/libglpk_la-stream.o .libs/libglpk_la-time.o .libs/libglpk_la-tls.o .libs/libglpk_la-minisat.o .libs/libglpk_la-bignum.o .libs/libglpk_la-dmp.o .libs/libglpk_la-ffalg.o .libs/libglpk_la-fp2rat.o .libs/libglpk_la-gcd.o .libs/libglpk_la-jd.o .libs/libglpk_la-keller.o .libs/libglpk_la-mc13d.o .libs/libglpk_la-mc21a.o .libs/libglpk_la-okalg.o .libs/libglpk_la-qmd.o .libs/libglpk_la-relax4.o .libs/libglpk_la-rng.o .libs/libglpk_la-rng1.o .libs/libglpk_la-round2n.o .libs/libglpk_la-str2int.o .libs/libglpk_la-str2num.o .libs/libglpk_la-strspx.o .libs/libglpk_la-strtrim.o .libs/libglpk_la-triang.o .libs/libglpk_la-wclique.o .libs/libglpk_la-wclique1.o .libs/libglpk_la-proxy.o .libs/libglpk_la-proxy1.o .libs/libglpk_la-adler32.o .libs/libglpk_la-compress.o .libs/libglpk_la-crc32.o .libs/libglpk_la-deflate.o .libs/libglpk_la-gzclose.o .libs/libglpk_la-gzlib.o .libs/libglpk_la-gzread.o .libs/libglpk_la-gzwrite.o .libs/libglpk_la-inffast.o .libs/libglpk_la-inflate.o .libs/libglpk_la-inftrees.o .libs/libglpk_la-trees.o .libs/libglpk_la-uncompr.o .libs/libglpk_la-zio.o .libs/libglpk_la-zutil.o -lm -O2 -Wl,-soname -Wl,libglpk.so.36 -Wl,-version-script -Wl,.libs/libglpk.ver -o .libs/libglpk.so.36.1.2 libtool: link: (cd ".libs" && rm -f "libglpk.so.36" && ln -s "libglpk.so.36.1.2" "libglpk.so.36") libtool: link: (cd ".libs" && rm -f "libglpk.so" && ln -s "libglpk.so.36.1.2" "libglpk.so") libtool: link: ar cru .libs/libglpk.a libglpk_la-avl.o libglpk_la-bfd.o libglpk_la-bfx.o libglpk_la-glpapi01.o libglpk_la-glpapi02.o libglpk_la-glpapi03.o libglpk_la-glpapi04.o libglpk_la-glpapi05.o libglpk_la-glpapi06.o libglpk_la-glpapi07.o libglpk_la-glpapi08.o libglpk_la-glpapi09.o libglpk_la-glpapi10.o libglpk_la-glpapi11.o libglpk_la-glpapi12.o libglpk_la-glpapi13.o libglpk_la-glpapi14.o libglpk_la-glpapi15.o libglpk_la-glpapi16.o libglpk_la-glpapi17.o libglpk_la-glpapi18.o libglpk_la-glpapi19.o libglpk_la-glpapi20.o libglpk_la-glpapi21.o libglpk_la-glpcpx.o libglpk_la-glpdmx.o libglpk_la-glpgmp.o libglpk_la-glphbm.o libglpk_la-glpini01.o libglpk_la-glpini02.o libglpk_la-glpios01.o libglpk_la-glpios02.o libglpk_la-glpios03.o libglpk_la-glpios04.o libglpk_la-glpios05.o libglpk_la-glpios06.o libglpk_la-glpios07.o libglpk_la-glpios08.o libglpk_la-glpios09.o libglpk_la-glpios10.o libglpk_la-glpios11.o libglpk_la-glpios12.o libglpk_la-glpipm.o libglpk_la-glpmat.o libglpk_la-glpmpl01.o libglpk_la-glpmpl02.o libglpk_la-glpmpl03.o libglpk_la-glpmpl04.o libglpk_la-glpmpl05.o libglpk_la-glpmpl06.o libglpk_la-glpmps.o libglpk_la-glpnet03.o libglpk_la-glpnet04.o libglpk_la-glpnet05.o libglpk_la-glpnpp01.o libglpk_la-glpnpp02.o libglpk_la-glpnpp03.o libglpk_la-glpnpp04.o libglpk_la-glpnpp05.o libglpk_la-glpnpp06.o libglpk_la-glprgr.o libglpk_la-glpscl.o libglpk_la-glpsdf.o libglpk_la-glpspm.o libglpk_la-glpspx01.o libglpk_la-glpspx02.o libglpk_la-glpsql.o libglpk_la-glpssx01.o libglpk_la-glpssx02.o libglpk_la-glptsp.o libglpk_la-lux.o libglpk_la-amd_1.o libglpk_la-amd_2.o libglpk_la-amd_aat.o libglpk_la-amd_control.o libglpk_la-amd_defaults.o libglpk_la-amd_dump.o libglpk_la-amd_info.o libglpk_la-amd_order.o libglpk_la-amd_post_tree.o libglpk_la-amd_postorder.o libglpk_la-amd_preprocess.o libglpk_la-amd_valid.o libglpk_la-btf.o libglpk_la-btfint.o libglpk_la-fhv.o libglpk_la-fhvint.o libglpk_la-ifu.o libglpk_la-luf.o libglpk_la-lufint.o libglpk_la-scf.o libglpk_la-scfint.o libglpk_la-sgf.o libglpk_la-sva.o libglpk_la-cfg.o libglpk_la-cfg1.o libglpk_la-colamd.o libglpk_la-alloc.o libglpk_la-dlsup.o libglpk_la-env.o libglpk_la-error.o libglpk_la-stdout.o libglpk_la-stream.o libglpk_la-time.o libglpk_la-tls.o libglpk_la-minisat.o libglpk_la-bignum.o libglpk_la-dmp.o libglpk_la-ffalg.o libglpk_la-fp2rat.o libglpk_la-gcd.o libglpk_la-jd.o libglpk_la-keller.o libglpk_la-mc13d.o libglpk_la-mc21a.o libglpk_la-okalg.o libglpk_la-qmd.o libglpk_la-relax4.o libglpk_la-rng.o libglpk_la-rng1.o libglpk_la-round2n.o libglpk_la-str2int.o libglpk_la-str2num.o libglpk_la-strspx.o libglpk_la-strtrim.o libglpk_la-triang.o libglpk_la-wclique.o libglpk_la-wclique1.o libglpk_la-proxy.o libglpk_la-proxy1.o libglpk_la-adler32.o libglpk_la-compress.o libglpk_la-crc32.o libglpk_la-deflate.o libglpk_la-gzclose.o libglpk_la-gzlib.o libglpk_la-gzread.o libglpk_la-gzwrite.o libglpk_la-inffast.o libglpk_la-inflate.o libglpk_la-inftrees.o libglpk_la-trees.o libglpk_la-uncompr.o libglpk_la-zio.o libglpk_la-zutil.o libtool: link: ranlib .libs/libglpk.a libtool: link: ( cd ".libs" && rm -f "libglpk.la" && ln -s "../libglpk.la" "libglpk.la" ) make[2]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' Making all in examples make[2]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/examples' gcc -DHAVE_CONFIG_H -I. -I.. -I./../src -g -O2 -MT glpsol.o -MD -MP -MF .deps/glpsol.Tpo -c -o glpsol.o glpsol.c mv -f .deps/glpsol.Tpo .deps/glpsol.Po /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -o glpsol glpsol.o ../src/libglpk.la -lm libtool: link: gcc -g -O2 -o .libs/glpsol glpsol.o ../src/.libs/libglpk.so -lm make[2]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/examples' make[2]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55' make[2]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55' make[1]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55' Making install in src make[1]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' make[2]: Entering directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' /bin/mkdir -p '/usr/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libglpk.la '/usr/lib' libtool: install: /usr/bin/install -c .libs/libglpk.so.36.1.2 /usr/lib/libglpk.so.36.1.2 /usr/bin/install: cannot create regular file '/usr/lib/libglpk.so.36.1.2': Permission denied Makefile:502: recipe for target 'install-libLTLIBRARIES' failed make[2]: *** [install-libLTLIBRARIES] Error 1 make[2]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' Makefile:1862: recipe for target 'install-am' failed make[1]: *** [install-am] Error 2 make[1]: Leaving directory '/tmp/pip-wheel-0ok6vmz4/humann2/glpk_download_g4yoenli/glpk-4.55/src' Makefile:320: recipe for target 'install-recursive' failed make: *** [install-recursive] Error 1 Installing diamond. Downloading http://github.com/bbuchfink/diamond/releases/download/v0.8.22/diamond-linux64.tar.gz Downloading file of size: 1.75 MB 0.01 MB 0.45 % 0.11 MB/sec 0 min 16 sec 0.02 MB 0.89 % 0.21 MB/sec 0 min 8 sec 0.02 MB 1.34 % 0.31 MB/sec 0 min 6 sec 0.03 MB 1.79 % 0.41 MB/sec 0 min 4 sec 0.04 MB 2.24 % 0.26 MB/sec 0 min 7 sec 0.05 MB 2.68 % 0.31 MB/sec 0 min 5 sec 0.05 MB 3.13 % 0.36 MB/sec 0 min 5 sec 0.06 MB 3.58 % 0.41 MB/sec 0 min 4 sec 0.07 MB 4.02 % 0.45 MB/sec 0 min 4 sec 0.08 MB 4.47 % 0.50 MB/sec 0 min 3 sec 0.09 MB 4.92 % 0.55 MB/sec 0 min 3 sec 0.09 MB 5.36 % 0.60 MB/sec 0 min 3 sec 0.10 MB 5.81 % 0.45 MB/sec 0 min 4 sec 0.11 MB 6.26 % 0.48 MB/sec 0 min 3 sec 0.12 MB 6.71 % 0.51 MB/sec 0 min 3 sec 0.12 MB 7.15 % 0.55 MB/sec 0 min 3 sec 0.13 MB 7.60 % 0.58 MB/sec 0 min 3 sec 0.14 MB 8.05 % 0.61 MB/sec 0 min 3 sec 0.15 MB 8.49 % 0.64 MB/sec 0 min 2 sec 0.16 MB 8.94 % 0.67 MB/sec 0 min 2 sec 0.16 MB 9.39 % 0.70 MB/sec 0 min 2 sec 0.17 MB 9.84 % 0.73 MB/sec 0 min 2 sec 0.18 MB 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99.69 % 2.16 MB/sec 0 min 0 sec 1.75 MB 100.14 % 2.17 MB/sec 0 min -0 sec WARNING: Unable to install diamond. Please install diamond. Installing bowtie2. Downloading http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.3/bowtie2-2.2.3-linux-x86_64.zip Downloading file of size: 25.18 MB 0.01 MB 0.03 % 4.76 MB/sec 0 min 5 sec 0.02 MB 0.06 % 4.41 MB/sec 0 min 6 sec 0.02 MB 0.09 % 5.97 MB/sec 0 min 4 sec 0.03 MB 0.12 % 4.90 MB/sec 0 min 5 sec 0.04 MB 0.16 % 5.68 MB/sec 0 min 4 sec 0.05 MB 0.19 % 5.32 MB/sec 0 min 5 sec 0.05 MB 0.22 % 5.91 MB/sec 0 min 4 sec 0.06 MB 0.25 % 5.61 MB/sec 0 min 4 sec 0.07 MB 0.28 % 6.09 MB/sec 0 min 4 sec 0.08 MB 0.31 % 5.87 MB/sec 0 min 4 sec 0.09 MB 0.34 % 6.28 MB/sec 0 min 4 sec 0.09 MB 0.37 % 5.25 MB/sec 0 min 5 sec 0.10 MB 0.40 % 5.54 MB/sec 0 min 5 sec 0.11 MB 0.43 % 5.42 MB/sec 0 min 5 sec 0.12 MB 0.47 % 5.70 MB/sec 0 min 4 sec 0.12 MB 0.50 % 1.94 MB/sec 0 min 13 sec 0.13 MB 0.53 % 2.04 MB/sec 0 min 12 sec 0.14 MB 0.56 % 2.10 MB/sec 0 min 12 sec 0.15 MB 0.59 % 2.20 MB/sec 0 min 11 sec 0.16 MB 0.62 % 2.25 MB/sec 0 min 11 sec 0.16 MB 0.65 % 2.35 MB/sec 0 min 11 sec 0.17 MB 0.68 % 2.39 MB/sec 0 min 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min 32 sec 0.57 MB 2.27 % 0.06 MB/sec 6 min 26 sec 0.58 MB 2.30 % 0.06 MB/sec 6 min 21 sec 0.59 MB 2.33 % 0.07 MB/sec 6 min 16 sec 0.59 MB 2.36 % 0.07 MB/sec 6 min 11 sec 0.60 MB 2.39 % 0.07 MB/sec 6 min 6 sec 0.61 MB 2.42 % 0.07 MB/sec 6 min 1 sec 0.62 MB 2.45 % 0.07 MB/sec 5 min 56 sec 0.62 MB 2.48 % 0.07 MB/sec 5 min 52 sec 0.63 MB 2.51 % 0.07 MB/sec 5 min 47 sec 0.64 MB 2.54 % 0.07 MB/sec 5 min 43 sec 0.65 MB 2.58 % 0.07 MB/sec 5 min 39 sec 0.66 MB 2.61 % 0.07 MB/sec 5 min 35 sec 0.66 MB 2.64 % 0.07 MB/sec 5 min 31 sec 0.67 MB 2.67 % 0.07 MB/sec 5 min 27 sec 0.68 MB 2.70 % 0.08 MB/sec 5 min 23 sec 0.69 MB 2.73 % 0.08 MB/sec 5 min 19 sec 0.70 MB 2.76 % 0.08 MB/sec 5 min 16 sec 0.70 MB 2.79 % 0.08 MB/sec 5 min 12 sec 0.71 MB 2.82 % 0.08 MB/sec 5 min 9 sec 0.72 MB 2.85 % 0.08 MB/sec 5 min 5 sec 0.73 MB 2.89 % 0.08 MB/sec 5 min 2 sec 0.73 MB 2.92 % 0.08 MB/sec 4 min 59 sec 0.74 MB 2.95 % 0.08 MB/sec 4 min 55 sec 0.75 MB 2.98 % 0.08 MB/sec 4 min 52 sec 0.76 MB 3.01 % 0.08 MB/sec 4 min 49 sec 0.77 MB 3.04 % 0.09 MB/sec 4 min 46 sec 0.77 MB 3.07 % 0.09 MB/sec 4 min 43 sec 0.78 MB 3.10 % 0.09 MB/sec 4 min 40 sec 0.79 MB 3.13 % 0.09 MB/sec 4 min 38 sec 0.80 MB 3.16 % 0.09 MB/sec 4 min 35 sec 0.80 MB 3.20 % 0.09 MB/sec 4 min 32 sec 0.81 MB 3.23 % 0.09 MB/sec 4 min 29 sec 0.82 MB 3.26 % 0.09 MB/sec 4 min 27 sec 0.83 MB 3.29 % 0.09 MB/sec 4 min 24 sec 0.84 MB 3.32 % 0.09 MB/sec 4 min 22 sec 0.84 MB 3.35 % 0.09 MB/sec 4 min 19 sec 0.85 MB 3.38 % 0.09 MB/sec 4 min 17 sec 0.86 MB 3.41 % 0.10 MB/sec 4 min 14 sec 0.87 MB 3.44 % 0.10 MB/sec 4 min 12 sec 0.88 MB 3.48 % 0.05 MB/sec 7 min 42 sec 0.88 MB 3.51 % 0.05 MB/sec 7 min 38 sec 0.89 MB 3.54 % 0.05 MB/sec 7 min 34 sec 0.90 MB 3.57 % 0.05 MB/sec 7 min 30 sec 0.91 MB 3.60 % 0.05 MB/sec 7 min 26 sec 0.91 MB 3.63 % 0.05 MB/sec 7 min 22 sec 0.92 MB 3.66 % 0.06 MB/sec 7 min 18 sec 0.93 MB 3.69 % 0.06 MB/sec 7 min 14 sec 0.94 MB 3.72 % 0.06 MB/sec 7 min 11 sec 0.95 MB 3.75 % 0.06 MB/sec 7 min 7 sec 0.95 MB 3.79 % 0.06 MB/sec 7 min 4 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2 min 47 sec 2.34 MB 9.28 % 0.14 MB/sec 2 min 47 sec 2.34 MB 9.31 % 0.14 MB/sec 2 min 46 sec 2.35 MB 9.34 % 0.14 MB/sec 2 min 45 sec 2.36 MB 9.37 % 0.14 MB/sec 2 min 45 sec 2.37 MB 9.40 % 0.14 MB/sec 2 min 44 sec 2.38 MB 9.43 % 0.14 MB/sec 2 min 44 sec 2.38 MB 9.46 % 0.14 MB/sec 2 min 43 sec 2.39 MB 9.49 % 0.14 MB/sec 2 min 42 sec 2.40 MB 9.53 % 0.14 MB/sec 2 min 42 sec 2.41 MB 9.56 % 0.14 MB/sec 2 min 41 sec 2.41 MB 9.59 % 0.14 MB/sec 2 min 41 sec 2.42 MB 9.62 % 0.14 MB/sec 2 min 40 sec 2.43 MB 9.65 % 0.14 MB/sec 2 min 40 sec 2.44 MB 9.68 % 0.14 MB/sec 2 min 39 sec 2.45 MB 9.71 % 0.14 MB/sec 2 min 38 sec 2.45 MB 9.74 % 0.14 MB/sec 2 min 38 sec 2.46 MB 9.77 % 0.14 MB/sec 2 min 37 sec 2.47 MB 9.81 % 0.14 MB/sec 2 min 37 sec 2.48 MB 9.84 % 0.15 MB/sec 2 min 36 sec 2.48 MB 9.87 % 0.15 MB/sec 2 min 36 sec 2.49 MB 9.90 % 0.15 MB/sec 2 min 35 sec 2.50 MB 9.93 % 0.15 MB/sec 2 min 35 sec 2.51 MB 9.96 % 0.15 MB/sec 2 min 34 sec 2.52 MB 9.99 % 0.15 MB/sec 2 min 34 sec 2.52 MB 10.02 % 0.15 MB/sec 2 min 33 sec 2.53 MB 10.05 % 0.15 MB/sec 2 min 33 sec 2.54 MB 10.08 % 0.15 MB/sec 2 min 32 sec 2.55 MB 10.12 % 0.15 MB/sec 2 min 32 sec 2.55 MB 10.15 % 0.15 MB/sec 2 min 31 sec 2.56 MB 10.18 % 0.15 MB/sec 2 min 31 sec 2.57 MB 10.21 % 0.15 MB/sec 2 min 30 sec 2.58 MB 10.24 % 0.15 MB/sec 2 min 30 sec 2.59 MB 10.27 % 0.15 MB/sec 2 min 29 sec 2.59 MB 10.30 % 0.15 MB/sec 2 min 29 sec 2.60 MB 10.33 % 0.15 MB/sec 2 min 28 sec 2.61 MB 10.36 % 0.15 MB/sec 2 min 28 sec 2.62 MB 10.39 % 0.15 MB/sec 2 min 27 sec 2.62 MB 10.43 % 0.15 MB/sec 2 min 27 sec 2.63 MB 10.46 % 0.15 MB/sec 2 min 26 sec 2.64 MB 10.49 % 0.15 MB/sec 2 min 26 sec 2.65 MB 10.52 % 0.16 MB/sec 2 min 25 sec 2.66 MB 10.55 % 0.16 MB/sec 2 min 25 sec 2.66 MB 10.58 % 0.16 MB/sec 2 min 24 sec 2.67 MB 10.61 % 0.16 MB/sec 2 min 24 sec 2.68 MB 10.64 % 0.16 MB/sec 2 min 23 sec 2.69 MB 10.67 % 0.16 MB/sec 2 min 23 sec 2.70 MB 10.71 % 0.16 MB/sec 2 min 22 sec 2.70 MB 10.74 % 0.16 MB/sec 2 min 22 sec 2.71 MB 10.77 % 0.16 MB/sec 2 min 21 sec 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Please install bowtie2. adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/humann2-2.8.2.dist-info/WHEEL creating '/tmp/pip-wheel-xoqrq3a_/humann2-2.8.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'humann2/__init__.py' adding 'humann2/check.py' adding 'humann2/config.py' adding 'humann2/humann2.cfg' adding 'humann2/humann2.py' adding 'humann2/store.py' adding 'humann2/utilities.py' adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_dorei.centroids.v0.1.1.ffn.gz' adding 'humann2/data/chocophlan_DEMO/g__Bacteroides.s__Bacteroides_vulgatus.centroids.v0.1.1.ffn.gz' adding 'humann2/data/misc/KeggOrgId2OrgNameTable.txt' adding 'humann2/data/misc/README.txt' adding 'humann2/data/misc/map_eggnog_name.txt.gz' adding 'humann2/data/misc/map_go_name.txt.gz' adding 'humann2/data/misc/map_kegg-mdl_name.txt.gz' adding 'humann2/data/misc/map_kegg-pwy_name.txt.gz' adding 'humann2/data/misc/map_ko_name.txt.gz' adding 'humann2/data/misc/map_level4ec_name.txt.gz' adding 'humann2/data/misc/map_metacyc-pwy_name.txt.gz' adding 'humann2/data/misc/map_metacyc-rxn_name.txt.gz' adding 'humann2/data/misc/map_pfam_name.txt.gz' adding 'humann2/data/misc/map_transporter_uniref50.txt.gz' adding 'humann2/data/misc/map_uniref50_name.txt.bz2' adding 'humann2/data/pathways/metacyc_pathways' adding 'humann2/data/pathways/metacyc_pathways_structured' adding 'humann2/data/pathways/metacyc_pathways_structured_filtered' adding 'humann2/data/pathways/metacyc_pathways_to_organisms' adding 'humann2/data/pathways/metacyc_reactions_level4ec_only.uniref.bz2' adding 'humann2/data/pathways/unipathway_pathways' adding 'humann2/data/pathways/unipathway_uniprots.uniref.bz2' adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.dmnd' adding 'humann2/data/uniref_DEMO/uniref90_demo_prots.faa' adding 'humann2/quantify/MinPath12hmp.py' adding 'humann2/quantify/__init__.py' adding 'humann2/quantify/chi2cdf.py' adding 'humann2/quantify/families.py' adding 'humann2/quantify/modules.py' adding 'humann2/quantify/xipe.py' adding 'humann2/search/__init__.py' adding 'humann2/search/blastx_coverage.py' adding 'humann2/search/nucleotide.py' adding 'humann2/search/pick_frames.py' adding 'humann2/search/prescreen.py' adding 'humann2/search/translated.py' adding 'humann2/tests/__init__.py' adding 'humann2/tests/advanced_tests_blastx_coverage.py' adding 'humann2/tests/advanced_tests_nucleotide_search.py' adding 'humann2/tests/advanced_tests_quantify_families.py' adding 'humann2/tests/advanced_tests_quantify_modules.py' adding 'humann2/tests/advanced_tests_store.py' adding 'humann2/tests/advanced_tests_translated_search.py' adding 'humann2/tests/advanced_tests_utilities.py' adding 'humann2/tests/basic_tests_nucleotide_search.py' adding 'humann2/tests/basic_tests_quantify_modules.py' adding 'humann2/tests/basic_tests_store.py' adding 'humann2/tests/basic_tests_utilities.py' adding 'humann2/tests/cfg.py' adding 'humann2/tests/functional_tests_biom_humann2.py' adding 'humann2/tests/functional_tests_biom_tools.py' adding 'humann2/tests/functional_tests_humann2.py' adding 'humann2/tests/functional_tests_tools.py' adding 'humann2/tests/humann2_test.py' adding 'humann2/tests/utils.py' adding 'humann2/tests/data/2_aligned_3_unaligned.sam' adding 'humann2/tests/data/annotations.m8' adding 'humann2/tests/data/annotations.sam' adding 'humann2/tests/data/convert_file.fasta' adding 'humann2/tests/data/convert_file.fastq' adding 'humann2/tests/data/convert_file_at_character.fastq' adding 'humann2/tests/data/convert_file_multiline.fasta' adding 'humann2/tests/data/convert_file_pick_frames.fasta' adding 'humann2/tests/data/demo.fasta' adding 'humann2/tests/data/demo.fastq' adding 'humann2/tests/data/demo.m8' adding 'humann2/tests/data/demo.sam' adding 'humann2/tests/data/demo_genefamilies.biom' adding 'humann2/tests/data/demo_genefamilies.tsv' adding 'humann2/tests/data/demo_genefamilies_with_names.tsv' adding 'humann2/tests/data/demo_metaphlan_bugs_list.tsv' adding 'humann2/tests/data/demo_pathabundance_with_names.tsv' adding 'humann2/tests/data/demo_pathcoverage_with_names.tsv' adding 'humann2/tests/data/file.bam' adding 'humann2/tests/data/file.fasta' adding 'humann2/tests/data/file.fastq' adding 'humann2/tests/data/file_no_space_identifier.fastq' adding 'humann2/tests/data/file_single_line_sequences.fasta' adding 'humann2/tests/data/file_space_identifier.fastq' adding 'humann2/tests/data/file_with_header.sam' adding 'humann2/tests/data/file_without_header.sam' adding 'humann2/tests/data/file_without_header_with_tags.sam' adding 'humann2/tests/data/gene_families.tsv' adding 'humann2/tests/data/gene_families_uniref50_with_names.tsv' adding 'humann2/tests/data/genefamilies.biom' adding 'humann2/tests/data/genefamilies_biom_match.tsv' adding 'humann2/tests/data/id_mapping.tsv' adding 'humann2/tests/data/id_mapping_coverage_filter.tsv' adding 'humann2/tests/data/id_mapping_gene_table.tsv' adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample1.biom' adding 'humann2/tests/data/multi_sample_biom_genefamilies_sample2.biom' adding 'humann2/tests/data/multi_sample_genefamilies.biom' adding 'humann2/tests/data/multi_sample_genefamilies.tsv' adding 'humann2/tests/data/multi_sample_genefamilies_sample1.tsv' adding 'humann2/tests/data/multi_sample_genefamilies_sample2.tsv' adding 'humann2/tests/data/rapsearch2_output_with_header.m8' adding 'humann2/tests/data/rapsearch2_output_with_header_no_log.m8' adding 'humann2/tests/data/rapsearch2_output_without_header.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_chocophlan_annotation.m8' adding 'humann2/tests/data/rapsearch2_output_without_header_coverage_filter_custom_annotation.m8' adding 'humann2/tests/data/reactions.tsv' adding 'humann2/tests/data/small_map_uniref50_name.txt.gz' adding 'humann2/tests/data/test_pathways.dat' adding 'humann2/tests/data/test_pathways_flat.tsv' adding 'humann2/tests/data/test_pathways_results.tsv' adding 'humann2/tests/data/usearch_output.tsv' adding 'humann2/tests/data/usearch_with_uniref50_output.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/genes.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/genes_inferred.tsv' adding 'humann2/tests/data/tooltest-infer_taxonomy/infer_taxonomy-command.sh' adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_genefamilies.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/demo_pathabundance.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_abundance-command.sh' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output.tsv' adding 'humann2/tests/data/tooltest-merge_abundance_tables/merge_output_remove_taxonomy.tsv' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_command.sh' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.biom' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_input.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ec_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_go_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_ko_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_mean_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-builtin_uniref50_rxn_output.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_command.sh' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_groups.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_input.txt' adding 'humann2/tests/data/tooltest-regroup_table/regroup_table-custom_output.txt' adding 'humann2/tests/data/tooltest-rename_table/pathabundance_without_names.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_command.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ec_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_ko_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_pathways_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-builtin_rxn_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom.txt.gz' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_command.sh' adding 'humann2/tests/data/tooltest-rename_table/rename_table-custom_output.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.biom' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ec.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_ko.txt' adding 'humann2/tests/data/tooltest-rename_table/rename_table-input_rxn.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-command.sh' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.biom' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-cpm_output.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.biom' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-input.txt' adding 'humann2/tests/data/tooltest-renorm_table/renorm_table-relab_output.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-command.sh' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-dna.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-laplace-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-10-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-log-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-rna.txt' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-relative_expression.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_dna.tsv' adding 'humann2/tests/data/tooltest-rna_dna_norm/rna_dna_norm-witten-bell-smoothed_rna.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/s1-strain_profile.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/s2-strain_profile.tsv' adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-command.sh' adding 'humann2/tests/data/tooltest-strain_profiler/strain_profiler-input.txt' adding 'humann2/tools/__init__.py' adding 'humann2/tools/build_custom_database.py' adding 'humann2/tools/genefamilies_genus_level.py' adding 'humann2/tools/humann2_associate.py' adding 'humann2/tools/humann2_barplot.py' adding 'humann2/tools/humann2_benchmark.py' adding 'humann2/tools/humann2_config.py' adding 'humann2/tools/humann2_databases.py' adding 'humann2/tools/humann2_expand_results_taxonomy.py' adding 'humann2/tools/humann2_humann1_kegg.py' adding 'humann2/tools/infer_taxonomy.py' adding 'humann2/tools/join_tables.py' adding 'humann2/tools/merge_abundance.py' adding 'humann2/tools/reduce_table.py' adding 'humann2/tools/regroup_table.py' adding 'humann2/tools/rename_table.py' adding 'humann2/tools/renorm_table.py' adding 'humann2/tools/rna_dna_norm.py' adding 'humann2/tools/split_stratified_table.py' adding 'humann2/tools/split_table.py' adding 'humann2/tools/strain_profiler.py' adding 'humann2/tools/util.py' adding 'humann2-2.8.2.dist-info/LICENSE' adding 'humann2-2.8.2.dist-info/METADATA' adding 'humann2-2.8.2.dist-info/WHEEL' adding 'humann2-2.8.2.dist-info/entry_points.txt' adding 'humann2-2.8.2.dist-info/top_level.txt' adding 'humann2-2.8.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for humann2: finished with status 'done' Stored in directory: /tmp/tmpbgdab3_a Successfully built humann2 Cleaning up... Removing source in /tmp/pip-wheel-0ok6vmz4/humann2 Removed build tracker '/tmp/pip-req-tracker-4bbmkuf2'