2020-04-04T13:19:16,757 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ic60f0f
2020-04-04T13:19:16,760 Created temporary directory: /tmp/pip-req-tracker-z4h0yup_
2020-04-04T13:19:16,761 Initialized build tracking at /tmp/pip-req-tracker-z4h0yup_
2020-04-04T13:19:16,761 Created build tracker: /tmp/pip-req-tracker-z4h0yup_
2020-04-04T13:19:16,762 Entered build tracker: /tmp/pip-req-tracker-z4h0yup_
2020-04-04T13:19:16,763 Created temporary directory: /tmp/pip-wheel-s9p_m9ra
2020-04-04T13:19:16,767 1 location(s) to search for versions of pyobo:
2020-04-04T13:19:16,767 * https://pypi.org/simple/pyobo/
2020-04-04T13:19:16,768 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/
2020-04-04T13:19:16,769 Getting page https://pypi.org/simple/pyobo/
2020-04-04T13:19:16,771 Found index url https://pypi.org/simple
2020-04-04T13:19:16,774 Getting credentials from keyring for https://pypi.org/simple
2020-04-04T13:19:16,774 Getting credentials from keyring for pypi.org
2020-04-04T13:19:17,053   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6)
2020-04-04T13:19:17,054   Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz#sha256=9fb4e320e19a802e3e97f2829d7cee4adfb324cccc8103c8abdf70148ace754b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1
2020-04-04T13:19:17,055   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl#sha256=4786be08595237409c6a2895c339ada4dba0a17f8e1212caa94b8a5c3d0c5f22 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,055   Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz#sha256=062fd78150d328133a011fe086a3b4567a30e6fdadbb0857fd0963cac5c388e0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2
2020-04-04T13:19:17,056   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/30/c1/4c7e619de5335d05a503530dbff450dbb3ba10b2e50775308f23edc62dc4/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,057   Found link https://files.pythonhosted.org/packages/6d/60/0378905c3a343db9d89179bcb84f0c8d29387d7c322fab2aa73f7b4734d2/pyobo-0.0.3.tar.gz#sha256=f451cd4382ee65a9ec22e516e7faf633f940d1f3aff972cc9d74dd17007c1215 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.3
2020-04-04T13:19:17,057   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/b3/3ce0c93c64fbc62a618c2a84892503ac438e2e4008c58c737401b1fac69c/pyobo-0.0.4-py3-none-any.whl#sha256=c85b32484262f90bffa2fc2e8ff832b044ec28aa7bee288c54f5ee28b898de5b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,058   Found link https://files.pythonhosted.org/packages/3a/77/399811b835d969bfb9ca11665192feb3d77ccdc814df1cb3a55de8ee6703/pyobo-0.0.4.tar.gz#sha256=98a73ff6fcd8a25f300e3c13e22770b95de3b75547d8acacfa3d4d43386c9596 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.4
2020-04-04T13:19:17,059   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/75/bc/9494351b989734fff9c48c8f78d8588c1cbd45a30504ce0db3bf8c4d24f3/pyobo-0.0.5-py3-none-any.whl#sha256=46f573a41f6d6c5b55c18fdb0e8b27d02aaa81c534f38d79cf18e66cfeb176cb (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,060   Found link https://files.pythonhosted.org/packages/d8/4d/6a4352fbdd9826bae90c9745ad7e2a2dda0982b266e5ebad41c3a68259a0/pyobo-0.0.5.tar.gz#sha256=dd983142befe5c4b175af3457f4cfd29704a03532c3eb575bd95a2a0907768c2 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.5
2020-04-04T13:19:17,060   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/73/45/0b78d73ff6f0b3a2f45db53d02d2761f4785b7abc3894b01859061f24313/pyobo-0.0.6-py3-none-any.whl#sha256=197133cf87ddf12a4c76b2d6e82d1f543aacde6cb66b090bc13ea3a2619622ea (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,061   Found link https://files.pythonhosted.org/packages/61/98/486dadecc83fbbd5d49648dd09a0d05d91501f4a7be461ba37a37fd711b6/pyobo-0.0.6.tar.gz#sha256=98b4fee0543fc0a00da34eeb2f3d888f8120c5ac796300de0c5dc12fee3f6bfd (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.6
2020-04-04T13:19:17,062   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d4/f1/e5fc418924c64b351b73a1ab496e98530033d285fd2bba61a31e17819833/pyobo-0.0.7-py3-none-any.whl#sha256=a60c825ee223c9578f47e948e3634fffe3b8f22e38d57b4020134a943d7769b1 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,062   Found link https://files.pythonhosted.org/packages/7f/43/adfd5d951cbbf3a90f721a031d0236de5ed4eafa9986e070243f21708c27/pyobo-0.0.7.tar.gz#sha256=5f919500e2702b52d28e189b20c1cd082f62035174d2326929bdf33fa8ccdab0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.7
2020-04-04T13:19:17,063   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/f1/64/a51f3a9afc7a8b48df5e12260a97147770c7a01cde9bea622ec1542b679b/pyobo-0.1.0-py3-none-any.whl#sha256=67d9dd1ddc5183ccf9e89c8b95949905cadc45af7c8f407e45e091c58e502b27 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,064   Found link https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.0
2020-04-04T13:19:17,064   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/16/13/e4c80bcce8ecf7a0b87c82e510655799d58700b589a666d0af1561bbe4e7/pyobo-0.1.1-py3-none-any.whl#sha256=c64623e7d677d19ab21f7af2d68bd914fea72535b586fa4f5872cdfed96af59a (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-04T13:19:17,065   Found link https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.1
2020-04-04T13:19:17,073 Given no hashes to check 1 links for project 'pyobo': discarding no candidates
2020-04-04T13:19:17,074 Using version 0.1.0 (newest of versions: 0.1.0)
2020-04-04T13:19:17,079 Collecting pyobo==0.1.0
2020-04-04T13:19:17,082   Created temporary directory: /tmp/pip-unpack-sa4__ibj
2020-04-04T13:19:17,084   Getting credentials from keyring for files.pythonhosted.org
2020-04-04T13:19:17,169   Downloading pyobo-0.1.0.tar.gz (293 kB)
2020-04-04T13:19:17,721   Added pyobo==0.1.0 from https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6 to build tracker '/tmp/pip-req-tracker-z4h0yup_'
2020-04-04T13:19:17,723     Running setup.py (path:/tmp/pip-wheel-s9p_m9ra/pyobo/setup.py) egg_info for package pyobo
2020-04-04T13:19:17,724     Running command python setup.py egg_info
2020-04-04T13:19:19,320     running egg_info
2020-04-04T13:19:19,324     creating /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info
2020-04-04T13:19:19,325     writing /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/PKG-INFO
2020-04-04T13:19:19,330     writing dependency_links to /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/dependency_links.txt
2020-04-04T13:19:19,333     writing entry points to /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/entry_points.txt
2020-04-04T13:19:19,336     writing requirements to /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/requires.txt
2020-04-04T13:19:19,337     writing top-level names to /tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/top_level.txt
2020-04-04T13:19:19,341     writing manifest file '/tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-04T13:19:19,591     reading manifest file '/tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-04T13:19:19,593     reading manifest template 'MANIFEST.in'
2020-04-04T13:19:19,610     warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2020-04-04T13:19:19,611     warning: no previously-included files matching '__pycache__' found anywhere in distribution
2020-04-04T13:19:19,613     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-04-04T13:19:19,614     warning: no previously-included files matching '*.dylib' found anywhere in distribution
2020-04-04T13:19:19,615     warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-04-04T13:19:19,616     warning: no previously-included files matching '*.gpickle' found anywhere in distribution
2020-04-04T13:19:19,617     warning: no previously-included files found matching '.bumpversion.cfg'
2020-04-04T13:19:19,622     warning: no files found matching 'doc8.ini'
2020-04-04T13:19:19,623     warning: no files found matching '.coveragerc'
2020-04-04T13:19:19,633     writing manifest file '/tmp/pip-wheel-s9p_m9ra/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-04T13:19:19,744   Source in /tmp/pip-wheel-s9p_m9ra/pyobo has version 0.1.0, which satisfies requirement pyobo==0.1.0 from https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6
2020-04-04T13:19:19,745   Removed pyobo==0.1.0 from https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6 from build tracker '/tmp/pip-req-tracker-z4h0yup_'
2020-04-04T13:19:19,749 Building wheels for collected packages: pyobo
2020-04-04T13:19:19,756   Created temporary directory: /tmp/pip-wheel-73n_b05j
2020-04-04T13:19:19,756   Building wheel for pyobo (setup.py): started
2020-04-04T13:19:19,757   Destination directory: /tmp/pip-wheel-73n_b05j
2020-04-04T13:19:19,757   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-s9p_m9ra/pyobo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-s9p_m9ra/pyobo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-73n_b05j
2020-04-04T13:19:21,353   running bdist_wheel
2020-04-04T13:19:21,364   running build
2020-04-04T13:19:21,364   running build_py
2020-04-04T13:19:21,602   creating build
2020-04-04T13:19:21,603   creating build/lib
2020-04-04T13:19:21,604   creating build/lib/pyobo
2020-04-04T13:19:21,606   copying src/pyobo/path_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,609   copying src/pyobo/cli_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,612   copying src/pyobo/cache_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,616   copying src/pyobo/identifier_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,619   copying src/pyobo/version.py -> build/lib/pyobo
2020-04-04T13:19:21,626   copying src/pyobo/iter_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,631   copying src/pyobo/__main__.py -> build/lib/pyobo
2020-04-04T13:19:21,636   copying src/pyobo/constants.py -> build/lib/pyobo
2020-04-04T13:19:21,640   copying src/pyobo/extract.py -> build/lib/pyobo
2020-04-04T13:19:21,645   copying src/pyobo/getters.py -> build/lib/pyobo
2020-04-04T13:19:21,650   copying src/pyobo/io_utils.py -> build/lib/pyobo
2020-04-04T13:19:21,655   copying src/pyobo/cli.py -> build/lib/pyobo
2020-04-04T13:19:21,660   copying src/pyobo/__init__.py -> build/lib/pyobo
2020-04-04T13:19:21,666   creating build/lib/pyobo/struct
2020-04-04T13:19:21,667   copying src/pyobo/struct/registry.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,671   copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,674   copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,678   copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,681   copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,685   copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct
2020-04-04T13:19:21,694   creating build/lib/pyobo/sources
2020-04-04T13:19:21,696   copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,702   copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,707   copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,710   copying src/pyobo/sources/msig.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,713   copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,716   copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,719   copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,722   copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,725   copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,730   copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,734   copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,740   copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,745   copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,749   copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,752   copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,756   copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,759   copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,762   copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,765   copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources
2020-04-04T13:19:21,773   creating build/lib/pyobo/database
2020-04-04T13:19:21,775   copying src/pyobo/database/__init__.py -> build/lib/pyobo/database
2020-04-04T13:19:21,782   creating build/lib/pyobo/apps
2020-04-04T13:19:21,784   copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps
2020-04-04T13:19:21,790   creating build/lib/pyobo/registries
2020-04-04T13:19:21,791   copying src/pyobo/registries/registries.py -> build/lib/pyobo/registries
2020-04-04T13:19:21,795   copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries
2020-04-04T13:19:21,798   copying src/pyobo/registries/compare.py -> build/lib/pyobo/registries
2020-04-04T13:19:21,803   creating build/lib/pyobo/xrefdb
2020-04-04T13:19:21,804   copying src/pyobo/xrefdb/__main__.py -> build/lib/pyobo/xrefdb
2020-04-04T13:19:21,808   copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb
2020-04-04T13:19:21,813   copying src/pyobo/xrefdb/cli.py -> build/lib/pyobo/xrefdb
2020-04-04T13:19:21,818   copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb
2020-04-04T13:19:21,825   creating build/lib/pyobo/database/sql
2020-04-04T13:19:21,827   copying src/pyobo/database/sql/manager.py -> build/lib/pyobo/database/sql
2020-04-04T13:19:21,831   copying src/pyobo/database/sql/models.py -> build/lib/pyobo/database/sql
2020-04-04T13:19:21,834   copying src/pyobo/database/sql/upload.py -> build/lib/pyobo/database/sql
2020-04-04T13:19:21,837   copying src/pyobo/database/sql/__init__.py -> build/lib/pyobo/database/sql
2020-04-04T13:19:21,841   creating build/lib/pyobo/apps/gilda
2020-04-04T13:19:21,843   copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda
2020-04-04T13:19:21,846   copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda
2020-04-04T13:19:21,851   copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda
2020-04-04T13:19:21,858   creating build/lib/pyobo/apps/mapper
2020-04-04T13:19:21,860   copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper
2020-04-04T13:19:21,866   copying src/pyobo/apps/mapper/cli.py -> build/lib/pyobo/apps/mapper
2020-04-04T13:19:21,870   copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper
2020-04-04T13:19:21,874   creating build/lib/pyobo/xrefdb/sources
2020-04-04T13:19:21,875   copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources
2020-04-04T13:19:21,883   copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources
2020-04-04T13:19:21,886   copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources
2020-04-04T13:19:21,890   running egg_info
2020-04-04T13:19:21,920   writing src/pyobo.egg-info/PKG-INFO
2020-04-04T13:19:21,923   writing dependency_links to src/pyobo.egg-info/dependency_links.txt
2020-04-04T13:19:21,926   writing entry points to src/pyobo.egg-info/entry_points.txt
2020-04-04T13:19:21,929   writing requirements to src/pyobo.egg-info/requires.txt
2020-04-04T13:19:21,931   writing top-level names to src/pyobo.egg-info/top_level.txt
2020-04-04T13:19:21,950   reading manifest file 'src/pyobo.egg-info/SOURCES.txt'
2020-04-04T13:19:21,956   reading manifest template 'MANIFEST.in'
2020-04-04T13:19:21,971   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2020-04-04T13:19:21,973   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2020-04-04T13:19:21,974   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-04-04T13:19:21,976   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2020-04-04T13:19:21,978   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-04-04T13:19:21,979   warning: no previously-included files matching '*.gpickle' found anywhere in distribution
2020-04-04T13:19:21,981   warning: no previously-included files found matching '.bumpversion.cfg'
2020-04-04T13:19:21,985   warning: no files found matching 'doc8.ini'
2020-04-04T13:19:21,985   warning: no files found matching '.coveragerc'
2020-04-04T13:19:21,998   writing manifest file 'src/pyobo.egg-info/SOURCES.txt'
2020-04-04T13:19:22,005   copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries
2020-04-04T13:19:22,010   copying src/pyobo/registries/miriam.json -> build/lib/pyobo/registries
2020-04-04T13:19:22,043   copying src/pyobo/registries/obofoundry.json -> build/lib/pyobo/registries
2020-04-04T13:19:22,056   copying src/pyobo/registries/ols.json -> build/lib/pyobo/registries
2020-04-04T13:19:22,092   creating build/lib/pyobo/apps/gilda/templates
2020-04-04T13:19:22,094   copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates
2020-04-04T13:19:22,097   copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates
2020-04-04T13:19:22,102   copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates
2020-04-04T13:19:22,130   installing to build/bdist.linux-armv7l/wheel
2020-04-04T13:19:22,131   running install
2020-04-04T13:19:22,132   running install_lib
2020-04-04T13:19:22,138   creating build/bdist.linux-armv7l
2020-04-04T13:19:22,138   creating build/bdist.linux-armv7l/wheel
2020-04-04T13:19:22,141   creating build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,143   copying build/lib/pyobo/path_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,146   copying build/lib/pyobo/cli_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,150   copying build/lib/pyobo/cache_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,153   copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,157   creating build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,158   copying build/lib/pyobo/struct/registry.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,161   copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,166   copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,172   copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,177   copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,183   copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-04T13:19:22,187   copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,192   copying build/lib/pyobo/iter_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,197   copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,202   copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,205   copying build/lib/pyobo/extract.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,210   creating build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,211   copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,215   copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,219   copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,222   copying build/lib/pyobo/sources/msig.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,227   copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,232   copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,237   copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,242   copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,247   copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,252   copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,260   copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,266   copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,270   copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,275   copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,280   copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,291   copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,296   copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,301   copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,307   copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-04T13:19:22,313   copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,318   copying build/lib/pyobo/io_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,324   creating build/bdist.linux-armv7l/wheel/pyobo/database
2020-04-04T13:19:22,328   creating build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-04T13:19:22,330   copying build/lib/pyobo/database/sql/manager.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-04T13:19:22,335   copying build/lib/pyobo/database/sql/models.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-04T13:19:22,340   copying build/lib/pyobo/database/sql/upload.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-04T13:19:22,345   copying build/lib/pyobo/database/sql/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-04T13:19:22,348   copying build/lib/pyobo/database/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database
2020-04-04T13:19:22,352   creating build/bdist.linux-armv7l/wheel/pyobo/apps
2020-04-04T13:19:22,355   creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-04T13:19:22,357   copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-04T13:19:22,364   copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-04T13:19:22,371   creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-04T13:19:22,373   copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-04T13:19:22,378   copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-04T13:19:22,383   copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-04T13:19:22,387   copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-04T13:19:22,391   creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-04T13:19:22,393   copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-04T13:19:22,396   copying build/lib/pyobo/apps/mapper/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-04T13:19:22,400   copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-04T13:19:22,403   copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps
2020-04-04T13:19:22,406   copying build/lib/pyobo/cli.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,412   creating build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,414   copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,421   copying build/lib/pyobo/registries/ols.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,456   copying build/lib/pyobo/registries/registries.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,459   copying build/lib/pyobo/registries/miriam.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,495   copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,498   copying build/lib/pyobo/registries/compare.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,502   copying build/lib/pyobo/registries/obofoundry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-04T13:19:22,521   creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-04T13:19:22,523   copying build/lib/pyobo/xrefdb/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-04T13:19:22,530   creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-04T13:19:22,532   copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-04T13:19:22,538   copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-04T13:19:22,543   copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-04T13:19:22,547   copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-04T13:19:22,551   copying build/lib/pyobo/xrefdb/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-04T13:19:22,555   copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-04T13:19:22,558   copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-04T13:19:22,561   running install_egg_info
2020-04-04T13:19:22,573   Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.1.0-py3.7.egg-info
2020-04-04T13:19:22,601   running install_scripts
2020-04-04T13:19:22,740   creating build/bdist.linux-armv7l/wheel/pyobo-0.1.0.dist-info/WHEEL
2020-04-04T13:19:22,744   creating '/tmp/pip-wheel-73n_b05j/pyobo-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-04-04T13:19:22,748   adding 'pyobo/__init__.py'
2020-04-04T13:19:22,750   adding 'pyobo/__main__.py'
2020-04-04T13:19:22,752   adding 'pyobo/cache_utils.py'
2020-04-04T13:19:22,754   adding 'pyobo/cli.py'
2020-04-04T13:19:22,756   adding 'pyobo/cli_utils.py'
2020-04-04T13:19:22,758   adding 'pyobo/constants.py'
2020-04-04T13:19:22,761   adding 'pyobo/extract.py'
2020-04-04T13:19:22,763   adding 'pyobo/getters.py'
2020-04-04T13:19:22,765   adding 'pyobo/identifier_utils.py'
2020-04-04T13:19:22,767   adding 'pyobo/io_utils.py'
2020-04-04T13:19:22,770   adding 'pyobo/iter_utils.py'
2020-04-04T13:19:22,772   adding 'pyobo/path_utils.py'
2020-04-04T13:19:22,774   adding 'pyobo/version.py'
2020-04-04T13:19:22,777   adding 'pyobo/apps/__init__.py'
2020-04-04T13:19:22,780   adding 'pyobo/apps/gilda/__init__.py'
2020-04-04T13:19:22,782   adding 'pyobo/apps/gilda/__main__.py'
2020-04-04T13:19:22,784   adding 'pyobo/apps/gilda/cli.py'
2020-04-04T13:19:22,787   adding 'pyobo/apps/gilda/templates/base.html'
2020-04-04T13:19:22,789   adding 'pyobo/apps/gilda/templates/home.html'
2020-04-04T13:19:22,791   adding 'pyobo/apps/gilda/templates/matches.html'
2020-04-04T13:19:22,794   adding 'pyobo/apps/mapper/__init__.py'
2020-04-04T13:19:22,796   adding 'pyobo/apps/mapper/__main__.py'
2020-04-04T13:19:22,798   adding 'pyobo/apps/mapper/cli.py'
2020-04-04T13:19:22,801   adding 'pyobo/database/__init__.py'
2020-04-04T13:19:22,804   adding 'pyobo/database/sql/__init__.py'
2020-04-04T13:19:22,806   adding 'pyobo/database/sql/manager.py'
2020-04-04T13:19:22,808   adding 'pyobo/database/sql/models.py'
2020-04-04T13:19:22,810   adding 'pyobo/database/sql/upload.py'
2020-04-04T13:19:22,813   adding 'pyobo/registries/__init__.py'
2020-04-04T13:19:22,815   adding 'pyobo/registries/compare.py'
2020-04-04T13:19:22,819   adding 'pyobo/registries/metaregistry.json'
2020-04-04T13:19:22,894   adding 'pyobo/registries/miriam.json'
2020-04-04T13:19:22,924   adding 'pyobo/registries/obofoundry.json'
2020-04-04T13:19:22,991   adding 'pyobo/registries/ols.json'
2020-04-04T13:19:23,000   adding 'pyobo/registries/registries.py'
2020-04-04T13:19:23,004   adding 'pyobo/sources/__init__.py'
2020-04-04T13:19:23,006   adding 'pyobo/sources/cgnc.py'
2020-04-04T13:19:23,009   adding 'pyobo/sources/complexportal.py'
2020-04-04T13:19:23,011   adding 'pyobo/sources/expasy.py'
2020-04-04T13:19:23,014   adding 'pyobo/sources/gmt_utils.py'
2020-04-04T13:19:23,016   adding 'pyobo/sources/hgnc.py'
2020-04-04T13:19:23,018   adding 'pyobo/sources/hgncgenefamily.py'
2020-04-04T13:19:23,021   adding 'pyobo/sources/mesh.py'
2020-04-04T13:19:23,023   adding 'pyobo/sources/mgi.py'
2020-04-04T13:19:23,026   adding 'pyobo/sources/mirbase.py'
2020-04-04T13:19:23,028   adding 'pyobo/sources/msig.py'
2020-04-04T13:19:23,031   adding 'pyobo/sources/ncbigene.py'
2020-04-04T13:19:23,033   adding 'pyobo/sources/pathbank.py'
2020-04-04T13:19:23,035   adding 'pyobo/sources/pid.py'
2020-04-04T13:19:23,037   adding 'pyobo/sources/pubchem.py'
2020-04-04T13:19:23,040   adding 'pyobo/sources/reactome.py'
2020-04-04T13:19:23,042   adding 'pyobo/sources/rgd.py'
2020-04-04T13:19:23,044   adding 'pyobo/sources/sgd.py'
2020-04-04T13:19:23,046   adding 'pyobo/sources/wikipathways.py'
2020-04-04T13:19:23,049   adding 'pyobo/struct/__init__.py'
2020-04-04T13:19:23,052   adding 'pyobo/struct/reference.py'
2020-04-04T13:19:23,054   adding 'pyobo/struct/registry.py'
2020-04-04T13:19:23,059   adding 'pyobo/struct/struct.py'
2020-04-04T13:19:23,062   adding 'pyobo/struct/typedef.py'
2020-04-04T13:19:23,064   adding 'pyobo/struct/utils.py'
2020-04-04T13:19:23,066   adding 'pyobo/xrefdb/__init__.py'
2020-04-04T13:19:23,068   adding 'pyobo/xrefdb/__main__.py'
2020-04-04T13:19:23,070   adding 'pyobo/xrefdb/cli.py'
2020-04-04T13:19:23,073   adding 'pyobo/xrefdb/xrefs_pipeline.py'
2020-04-04T13:19:23,076   adding 'pyobo/xrefdb/sources/__init__.py'
2020-04-04T13:19:23,078   adding 'pyobo/xrefdb/sources/cbms2019.py'
2020-04-04T13:19:23,080   adding 'pyobo/xrefdb/sources/gilda.py'
2020-04-04T13:19:23,084   adding 'pyobo-0.1.0.dist-info/LICENSE'
2020-04-04T13:19:23,086   adding 'pyobo-0.1.0.dist-info/METADATA'
2020-04-04T13:19:23,087   adding 'pyobo-0.1.0.dist-info/WHEEL'
2020-04-04T13:19:23,089   adding 'pyobo-0.1.0.dist-info/entry_points.txt'
2020-04-04T13:19:23,091   adding 'pyobo-0.1.0.dist-info/top_level.txt'
2020-04-04T13:19:23,092   adding 'pyobo-0.1.0.dist-info/RECORD'
2020-04-04T13:19:23,107   removing build/bdist.linux-armv7l/wheel
2020-04-04T13:19:23,284   Building wheel for pyobo (setup.py): finished with status 'done'
2020-04-04T13:19:23,292   Created wheel for pyobo: filename=pyobo-0.1.0-py3-none-any.whl size=311406 sha256=78e61f4f8398440e0eb513d288ac4854ebff328398d8417dbafd34d6b9d99222
2020-04-04T13:19:23,292   Stored in directory: /tmp/pip-ephem-wheel-cache-1ic60f0f/wheels/86/ec/0a/22ba91f9de6fc4381a0afa33f86609e43d37dd6586adac248e
2020-04-04T13:19:23,295 Successfully built pyobo
2020-04-04T13:19:23,448 Cleaning up...
2020-04-04T13:19:23,448   Removing source in /tmp/pip-wheel-s9p_m9ra/pyobo
2020-04-04T13:19:23,581 Removed build tracker: '/tmp/pip-req-tracker-z4h0yup_'