2020-04-05T16:41:35,368 Created temporary directory: /tmp/pip-ephem-wheel-cache-65n0a293
2020-04-05T16:41:35,371 Created temporary directory: /tmp/pip-req-tracker-p6rrhc5k
2020-04-05T16:41:35,372 Initialized build tracking at /tmp/pip-req-tracker-p6rrhc5k
2020-04-05T16:41:35,372 Created build tracker: /tmp/pip-req-tracker-p6rrhc5k
2020-04-05T16:41:35,372 Entered build tracker: /tmp/pip-req-tracker-p6rrhc5k
2020-04-05T16:41:35,374 Created temporary directory: /tmp/pip-wheel-narwmhln
2020-04-05T16:41:35,378 1 location(s) to search for versions of pyobo:
2020-04-05T16:41:35,378 * https://pypi.org/simple/pyobo/
2020-04-05T16:41:35,379 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/
2020-04-05T16:41:35,380 Getting page https://pypi.org/simple/pyobo/
2020-04-05T16:41:35,382 Found index url https://pypi.org/simple
2020-04-05T16:41:35,385 Getting credentials from keyring for https://pypi.org/simple
2020-04-05T16:41:35,385 Getting credentials from keyring for pypi.org
2020-04-05T16:41:35,672   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6)
2020-04-05T16:41:35,673   Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz#sha256=9fb4e320e19a802e3e97f2829d7cee4adfb324cccc8103c8abdf70148ace754b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1
2020-04-05T16:41:35,673   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl#sha256=4786be08595237409c6a2895c339ada4dba0a17f8e1212caa94b8a5c3d0c5f22 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,674   Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz#sha256=062fd78150d328133a011fe086a3b4567a30e6fdadbb0857fd0963cac5c388e0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2
2020-04-05T16:41:35,675   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/30/c1/4c7e619de5335d05a503530dbff450dbb3ba10b2e50775308f23edc62dc4/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,675   Found link https://files.pythonhosted.org/packages/6d/60/0378905c3a343db9d89179bcb84f0c8d29387d7c322fab2aa73f7b4734d2/pyobo-0.0.3.tar.gz#sha256=f451cd4382ee65a9ec22e516e7faf633f940d1f3aff972cc9d74dd17007c1215 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.3
2020-04-05T16:41:35,676   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/b3/3ce0c93c64fbc62a618c2a84892503ac438e2e4008c58c737401b1fac69c/pyobo-0.0.4-py3-none-any.whl#sha256=c85b32484262f90bffa2fc2e8ff832b044ec28aa7bee288c54f5ee28b898de5b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,677   Found link https://files.pythonhosted.org/packages/3a/77/399811b835d969bfb9ca11665192feb3d77ccdc814df1cb3a55de8ee6703/pyobo-0.0.4.tar.gz#sha256=98a73ff6fcd8a25f300e3c13e22770b95de3b75547d8acacfa3d4d43386c9596 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.4
2020-04-05T16:41:35,678   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/75/bc/9494351b989734fff9c48c8f78d8588c1cbd45a30504ce0db3bf8c4d24f3/pyobo-0.0.5-py3-none-any.whl#sha256=46f573a41f6d6c5b55c18fdb0e8b27d02aaa81c534f38d79cf18e66cfeb176cb (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,678   Found link https://files.pythonhosted.org/packages/d8/4d/6a4352fbdd9826bae90c9745ad7e2a2dda0982b266e5ebad41c3a68259a0/pyobo-0.0.5.tar.gz#sha256=dd983142befe5c4b175af3457f4cfd29704a03532c3eb575bd95a2a0907768c2 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.5
2020-04-05T16:41:35,679   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/73/45/0b78d73ff6f0b3a2f45db53d02d2761f4785b7abc3894b01859061f24313/pyobo-0.0.6-py3-none-any.whl#sha256=197133cf87ddf12a4c76b2d6e82d1f543aacde6cb66b090bc13ea3a2619622ea (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,680   Found link https://files.pythonhosted.org/packages/61/98/486dadecc83fbbd5d49648dd09a0d05d91501f4a7be461ba37a37fd711b6/pyobo-0.0.6.tar.gz#sha256=98b4fee0543fc0a00da34eeb2f3d888f8120c5ac796300de0c5dc12fee3f6bfd (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.6
2020-04-05T16:41:35,680   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d4/f1/e5fc418924c64b351b73a1ab496e98530033d285fd2bba61a31e17819833/pyobo-0.0.7-py3-none-any.whl#sha256=a60c825ee223c9578f47e948e3634fffe3b8f22e38d57b4020134a943d7769b1 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,681   Found link https://files.pythonhosted.org/packages/7f/43/adfd5d951cbbf3a90f721a031d0236de5ed4eafa9986e070243f21708c27/pyobo-0.0.7.tar.gz#sha256=5f919500e2702b52d28e189b20c1cd082f62035174d2326929bdf33fa8ccdab0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.7
2020-04-05T16:41:35,682   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/f1/64/a51f3a9afc7a8b48df5e12260a97147770c7a01cde9bea622ec1542b679b/pyobo-0.1.0-py3-none-any.whl#sha256=67d9dd1ddc5183ccf9e89c8b95949905cadc45af7c8f407e45e091c58e502b27 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,682   Found link https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.0
2020-04-05T16:41:35,683   Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/16/13/e4c80bcce8ecf7a0b87c82e510655799d58700b589a666d0af1561bbe4e7/pyobo-0.1.1-py3-none-any.whl#sha256=c64623e7d677d19ab21f7af2d68bd914fea72535b586fa4f5872cdfed96af59a (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7)
2020-04-05T16:41:35,683   Found link https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.1
2020-04-05T16:41:35,692 Given no hashes to check 1 links for project 'pyobo': discarding no candidates
2020-04-05T16:41:35,693 Using version 0.1.1 (newest of versions: 0.1.1)
2020-04-05T16:41:35,697 Collecting pyobo==0.1.1
2020-04-05T16:41:35,701   Created temporary directory: /tmp/pip-unpack-kk7qb8g4
2020-04-05T16:41:35,703   Getting credentials from keyring for files.pythonhosted.org
2020-04-05T16:41:35,790   Downloading pyobo-0.1.1.tar.gz (295 kB)
2020-04-05T16:41:36,340   Added pyobo==0.1.1 from https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e to build tracker '/tmp/pip-req-tracker-p6rrhc5k'
2020-04-05T16:41:36,342     Running setup.py (path:/tmp/pip-wheel-narwmhln/pyobo/setup.py) egg_info for package pyobo
2020-04-05T16:41:36,344     Running command python setup.py egg_info
2020-04-05T16:41:37,874     running egg_info
2020-04-05T16:41:37,878     creating /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info
2020-04-05T16:41:37,879     writing /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/PKG-INFO
2020-04-05T16:41:37,884     writing dependency_links to /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/dependency_links.txt
2020-04-05T16:41:37,886     writing entry points to /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/entry_points.txt
2020-04-05T16:41:37,889     writing requirements to /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/requires.txt
2020-04-05T16:41:37,890     writing top-level names to /tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/top_level.txt
2020-04-05T16:41:37,893     writing manifest file '/tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-05T16:41:38,143     reading manifest file '/tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-05T16:41:38,145     reading manifest template 'MANIFEST.in'
2020-04-05T16:41:38,162     warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2020-04-05T16:41:38,163     warning: no previously-included files matching '__pycache__' found anywhere in distribution
2020-04-05T16:41:38,164     warning: no previously-included files matching '*.so' found anywhere in distribution
2020-04-05T16:41:38,166     warning: no previously-included files matching '*.dylib' found anywhere in distribution
2020-04-05T16:41:38,167     warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-04-05T16:41:38,168     warning: no previously-included files matching '*.gpickle' found anywhere in distribution
2020-04-05T16:41:38,169     warning: no previously-included files found matching '.bumpversion.cfg'
2020-04-05T16:41:38,174     warning: no files found matching 'doc8.ini'
2020-04-05T16:41:38,175     warning: no files found matching '.coveragerc'
2020-04-05T16:41:38,185     writing manifest file '/tmp/pip-wheel-narwmhln/pyobo/pip-egg-info/pyobo.egg-info/SOURCES.txt'
2020-04-05T16:41:38,295   Source in /tmp/pip-wheel-narwmhln/pyobo has version 0.1.1, which satisfies requirement pyobo==0.1.1 from https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e
2020-04-05T16:41:38,296   Removed pyobo==0.1.1 from https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e from build tracker '/tmp/pip-req-tracker-p6rrhc5k'
2020-04-05T16:41:38,300 Building wheels for collected packages: pyobo
2020-04-05T16:41:38,306   Created temporary directory: /tmp/pip-wheel-3j3unkei
2020-04-05T16:41:38,307   Building wheel for pyobo (setup.py): started
2020-04-05T16:41:38,308   Destination directory: /tmp/pip-wheel-3j3unkei
2020-04-05T16:41:38,308   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-narwmhln/pyobo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-narwmhln/pyobo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3j3unkei
2020-04-05T16:41:39,858   running bdist_wheel
2020-04-05T16:41:39,868   running build
2020-04-05T16:41:39,869   running build_py
2020-04-05T16:41:40,102   creating build
2020-04-05T16:41:40,103   creating build/lib
2020-04-05T16:41:40,104   creating build/lib/pyobo
2020-04-05T16:41:40,106   copying src/pyobo/path_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,109   copying src/pyobo/cli_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,112   copying src/pyobo/cache_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,115   copying src/pyobo/identifier_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,118   copying src/pyobo/version.py -> build/lib/pyobo
2020-04-05T16:41:40,121   copying src/pyobo/iter_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,124   copying src/pyobo/__main__.py -> build/lib/pyobo
2020-04-05T16:41:40,127   copying src/pyobo/constants.py -> build/lib/pyobo
2020-04-05T16:41:40,130   copying src/pyobo/extract.py -> build/lib/pyobo
2020-04-05T16:41:40,134   copying src/pyobo/getters.py -> build/lib/pyobo
2020-04-05T16:41:40,138   copying src/pyobo/io_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,143   copying src/pyobo/cli.py -> build/lib/pyobo
2020-04-05T16:41:40,147   copying src/pyobo/ndex_utils.py -> build/lib/pyobo
2020-04-05T16:41:40,152   copying src/pyobo/__init__.py -> build/lib/pyobo
2020-04-05T16:41:40,157   creating build/lib/pyobo/struct
2020-04-05T16:41:40,158   copying src/pyobo/struct/registry.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,161   copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,164   copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,169   copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,172   copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,178   copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct
2020-04-05T16:41:40,187   creating build/lib/pyobo/sources
2020-04-05T16:41:40,189   copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,194   copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,197   copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,200   copying src/pyobo/sources/msig.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,203   copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,206   copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,210   copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,214   copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,218   copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,223   copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,227   copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,233   copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,236   copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,240   copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,243   copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,246   copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,250   copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,253   copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,258   copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources
2020-04-05T16:41:40,264   creating build/lib/pyobo/database
2020-04-05T16:41:40,266   copying src/pyobo/database/__init__.py -> build/lib/pyobo/database
2020-04-05T16:41:40,273   creating build/lib/pyobo/apps
2020-04-05T16:41:40,275   copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps
2020-04-05T16:41:40,279   creating build/lib/pyobo/registries
2020-04-05T16:41:40,280   copying src/pyobo/registries/registries.py -> build/lib/pyobo/registries
2020-04-05T16:41:40,284   copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries
2020-04-05T16:41:40,287   copying src/pyobo/registries/compare.py -> build/lib/pyobo/registries
2020-04-05T16:41:40,291   creating build/lib/pyobo/xrefdb
2020-04-05T16:41:40,292   copying src/pyobo/xrefdb/__main__.py -> build/lib/pyobo/xrefdb
2020-04-05T16:41:40,297   copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb
2020-04-05T16:41:40,301   copying src/pyobo/xrefdb/cli.py -> build/lib/pyobo/xrefdb
2020-04-05T16:41:40,305   copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb
2020-04-05T16:41:40,312   creating build/lib/pyobo/database/sql
2020-04-05T16:41:40,313   copying src/pyobo/database/sql/manager.py -> build/lib/pyobo/database/sql
2020-04-05T16:41:40,317   copying src/pyobo/database/sql/models.py -> build/lib/pyobo/database/sql
2020-04-05T16:41:40,320   copying src/pyobo/database/sql/upload.py -> build/lib/pyobo/database/sql
2020-04-05T16:41:40,322   copying src/pyobo/database/sql/__init__.py -> build/lib/pyobo/database/sql
2020-04-05T16:41:40,326   creating build/lib/pyobo/apps/gilda
2020-04-05T16:41:40,327   copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda
2020-04-05T16:41:40,330   copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda
2020-04-05T16:41:40,333   copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda
2020-04-05T16:41:40,337   creating build/lib/pyobo/apps/mapper
2020-04-05T16:41:40,338   copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper
2020-04-05T16:41:40,341   copying src/pyobo/apps/mapper/cli.py -> build/lib/pyobo/apps/mapper
2020-04-05T16:41:40,344   copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper
2020-04-05T16:41:40,348   creating build/lib/pyobo/xrefdb/sources
2020-04-05T16:41:40,349   copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources
2020-04-05T16:41:40,353   copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources
2020-04-05T16:41:40,355   copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources
2020-04-05T16:41:40,358   running egg_info
2020-04-05T16:41:40,378   writing src/pyobo.egg-info/PKG-INFO
2020-04-05T16:41:40,381   writing dependency_links to src/pyobo.egg-info/dependency_links.txt
2020-04-05T16:41:40,384   writing entry points to src/pyobo.egg-info/entry_points.txt
2020-04-05T16:41:40,387   writing requirements to src/pyobo.egg-info/requires.txt
2020-04-05T16:41:40,389   writing top-level names to src/pyobo.egg-info/top_level.txt
2020-04-05T16:41:40,407   reading manifest file 'src/pyobo.egg-info/SOURCES.txt'
2020-04-05T16:41:40,413   reading manifest template 'MANIFEST.in'
2020-04-05T16:41:40,428   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2020-04-05T16:41:40,429   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2020-04-05T16:41:40,431   warning: no previously-included files matching '*.so' found anywhere in distribution
2020-04-05T16:41:40,433   warning: no previously-included files matching '*.dylib' found anywhere in distribution
2020-04-05T16:41:40,434   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2020-04-05T16:41:40,436   warning: no previously-included files matching '*.gpickle' found anywhere in distribution
2020-04-05T16:41:40,437   warning: no previously-included files found matching '.bumpversion.cfg'
2020-04-05T16:41:40,441   warning: no files found matching 'doc8.ini'
2020-04-05T16:41:40,442   warning: no files found matching '.coveragerc'
2020-04-05T16:41:40,454   writing manifest file 'src/pyobo.egg-info/SOURCES.txt'
2020-04-05T16:41:40,461   copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries
2020-04-05T16:41:40,466   copying src/pyobo/registries/miriam.json -> build/lib/pyobo/registries
2020-04-05T16:41:40,505   copying src/pyobo/registries/obofoundry.json -> build/lib/pyobo/registries
2020-04-05T16:41:40,521   copying src/pyobo/registries/ols.json -> build/lib/pyobo/registries
2020-04-05T16:41:40,553   creating build/lib/pyobo/apps/gilda/templates
2020-04-05T16:41:40,554   copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates
2020-04-05T16:41:40,559   copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates
2020-04-05T16:41:40,564   copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates
2020-04-05T16:41:40,591   installing to build/bdist.linux-armv7l/wheel
2020-04-05T16:41:40,591   running install
2020-04-05T16:41:40,593   running install_lib
2020-04-05T16:41:40,598   creating build/bdist.linux-armv7l
2020-04-05T16:41:40,599   creating build/bdist.linux-armv7l/wheel
2020-04-05T16:41:40,602   creating build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,604   copying build/lib/pyobo/path_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,607   copying build/lib/pyobo/cli_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,611   copying build/lib/pyobo/cache_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,614   copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,618   creating build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,619   copying build/lib/pyobo/struct/registry.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,624   copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,628   copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,635   copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,640   copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,644   copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct
2020-04-05T16:41:40,647   copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,650   copying build/lib/pyobo/iter_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,653   copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,656   copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,659   copying build/lib/pyobo/extract.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,664   creating build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,665   copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,669   copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,672   copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,675   copying build/lib/pyobo/sources/msig.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,679   copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,682   copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,686   copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,689   copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,693   copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,696   copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,699   copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,703   copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,707   copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,710   copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,713   copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,716   copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,720   copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,724   copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,727   copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources
2020-04-05T16:41:40,730   copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,733   copying build/lib/pyobo/io_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,738   creating build/bdist.linux-armv7l/wheel/pyobo/database
2020-04-05T16:41:40,740   creating build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-05T16:41:40,742   copying build/lib/pyobo/database/sql/manager.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-05T16:41:40,745   copying build/lib/pyobo/database/sql/models.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-05T16:41:40,748   copying build/lib/pyobo/database/sql/upload.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-05T16:41:40,751   copying build/lib/pyobo/database/sql/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql
2020-04-05T16:41:40,755   copying build/lib/pyobo/database/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database
2020-04-05T16:41:40,758   creating build/bdist.linux-armv7l/wheel/pyobo/apps
2020-04-05T16:41:40,761   creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-05T16:41:40,762   copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-05T16:41:40,766   copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-05T16:41:40,770   creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-05T16:41:40,772   copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-05T16:41:40,775   copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-05T16:41:40,779   copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates
2020-04-05T16:41:40,782   copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda
2020-04-05T16:41:40,787   creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-05T16:41:40,788   copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-05T16:41:40,792   copying build/lib/pyobo/apps/mapper/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-05T16:41:40,797   copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper
2020-04-05T16:41:40,800   copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps
2020-04-05T16:41:40,805   copying build/lib/pyobo/cli.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,810   copying build/lib/pyobo/ndex_utils.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,816   creating build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,818   copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,824   copying build/lib/pyobo/registries/ols.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,856   copying build/lib/pyobo/registries/registries.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,860   copying build/lib/pyobo/registries/miriam.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,896   copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,899   copying build/lib/pyobo/registries/compare.py -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,903   copying build/lib/pyobo/registries/obofoundry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries
2020-04-05T16:41:40,919   creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-05T16:41:40,921   copying build/lib/pyobo/xrefdb/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-05T16:41:40,927   creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-05T16:41:40,929   copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-05T16:41:40,933   copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-05T16:41:40,936   copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources
2020-04-05T16:41:40,940   copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-05T16:41:40,943   copying build/lib/pyobo/xrefdb/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-05T16:41:40,947   copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb
2020-04-05T16:41:40,952   copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo
2020-04-05T16:41:40,956   running install_egg_info
2020-04-05T16:41:40,973   Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.1.1-py3.7.egg-info
2020-04-05T16:41:40,997   running install_scripts
2020-04-05T16:41:41,130   creating build/bdist.linux-armv7l/wheel/pyobo-0.1.1.dist-info/WHEEL
2020-04-05T16:41:41,134   creating '/tmp/pip-wheel-3j3unkei/pyobo-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-04-05T16:41:41,138   adding 'pyobo/__init__.py'
2020-04-05T16:41:41,140   adding 'pyobo/__main__.py'
2020-04-05T16:41:41,142   adding 'pyobo/cache_utils.py'
2020-04-05T16:41:41,144   adding 'pyobo/cli.py'
2020-04-05T16:41:41,146   adding 'pyobo/cli_utils.py'
2020-04-05T16:41:41,148   adding 'pyobo/constants.py'
2020-04-05T16:41:41,151   adding 'pyobo/extract.py'
2020-04-05T16:41:41,153   adding 'pyobo/getters.py'
2020-04-05T16:41:41,155   adding 'pyobo/identifier_utils.py'
2020-04-05T16:41:41,157   adding 'pyobo/io_utils.py'
2020-04-05T16:41:41,159   adding 'pyobo/iter_utils.py'
2020-04-05T16:41:41,162   adding 'pyobo/ndex_utils.py'
2020-04-05T16:41:41,164   adding 'pyobo/path_utils.py'
2020-04-05T16:41:41,166   adding 'pyobo/version.py'
2020-04-05T16:41:41,169   adding 'pyobo/apps/__init__.py'
2020-04-05T16:41:41,173   adding 'pyobo/apps/gilda/__init__.py'
2020-04-05T16:41:41,175   adding 'pyobo/apps/gilda/__main__.py'
2020-04-05T16:41:41,177   adding 'pyobo/apps/gilda/cli.py'
2020-04-05T16:41:41,180   adding 'pyobo/apps/gilda/templates/base.html'
2020-04-05T16:41:41,182   adding 'pyobo/apps/gilda/templates/home.html'
2020-04-05T16:41:41,184   adding 'pyobo/apps/gilda/templates/matches.html'
2020-04-05T16:41:41,187   adding 'pyobo/apps/mapper/__init__.py'
2020-04-05T16:41:41,189   adding 'pyobo/apps/mapper/__main__.py'
2020-04-05T16:41:41,192   adding 'pyobo/apps/mapper/cli.py'
2020-04-05T16:41:41,195   adding 'pyobo/database/__init__.py'
2020-04-05T16:41:41,198   adding 'pyobo/database/sql/__init__.py'
2020-04-05T16:41:41,200   adding 'pyobo/database/sql/manager.py'
2020-04-05T16:41:41,202   adding 'pyobo/database/sql/models.py'
2020-04-05T16:41:41,204   adding 'pyobo/database/sql/upload.py'
2020-04-05T16:41:41,207   adding 'pyobo/registries/__init__.py'
2020-04-05T16:41:41,209   adding 'pyobo/registries/compare.py'
2020-04-05T16:41:41,213   adding 'pyobo/registries/metaregistry.json'
2020-04-05T16:41:41,288   adding 'pyobo/registries/miriam.json'
2020-04-05T16:41:41,318   adding 'pyobo/registries/obofoundry.json'
2020-04-05T16:41:41,384   adding 'pyobo/registries/ols.json'
2020-04-05T16:41:41,394   adding 'pyobo/registries/registries.py'
2020-04-05T16:41:41,397   adding 'pyobo/sources/__init__.py'
2020-04-05T16:41:41,399   adding 'pyobo/sources/cgnc.py'
2020-04-05T16:41:41,402   adding 'pyobo/sources/complexportal.py'
2020-04-05T16:41:41,405   adding 'pyobo/sources/expasy.py'
2020-04-05T16:41:41,407   adding 'pyobo/sources/gmt_utils.py'
2020-04-05T16:41:41,409   adding 'pyobo/sources/hgnc.py'
2020-04-05T16:41:41,412   adding 'pyobo/sources/hgncgenefamily.py'
2020-04-05T16:41:41,414   adding 'pyobo/sources/mesh.py'
2020-04-05T16:41:41,417   adding 'pyobo/sources/mgi.py'
2020-04-05T16:41:41,419   adding 'pyobo/sources/mirbase.py'
2020-04-05T16:41:41,422   adding 'pyobo/sources/msig.py'
2020-04-05T16:41:41,424   adding 'pyobo/sources/ncbigene.py'
2020-04-05T16:41:41,426   adding 'pyobo/sources/pathbank.py'
2020-04-05T16:41:41,429   adding 'pyobo/sources/pid.py'
2020-04-05T16:41:41,431   adding 'pyobo/sources/pubchem.py'
2020-04-05T16:41:41,434   adding 'pyobo/sources/reactome.py'
2020-04-05T16:41:41,436   adding 'pyobo/sources/rgd.py'
2020-04-05T16:41:41,438   adding 'pyobo/sources/sgd.py'
2020-04-05T16:41:41,440   adding 'pyobo/sources/wikipathways.py'
2020-04-05T16:41:41,443   adding 'pyobo/struct/__init__.py'
2020-04-05T16:41:41,445   adding 'pyobo/struct/reference.py'
2020-04-05T16:41:41,447   adding 'pyobo/struct/registry.py'
2020-04-05T16:41:41,452   adding 'pyobo/struct/struct.py'
2020-04-05T16:41:41,455   adding 'pyobo/struct/typedef.py'
2020-04-05T16:41:41,457   adding 'pyobo/struct/utils.py'
2020-04-05T16:41:41,460   adding 'pyobo/xrefdb/__init__.py'
2020-04-05T16:41:41,462   adding 'pyobo/xrefdb/__main__.py'
2020-04-05T16:41:41,464   adding 'pyobo/xrefdb/cli.py'
2020-04-05T16:41:41,466   adding 'pyobo/xrefdb/xrefs_pipeline.py'
2020-04-05T16:41:41,469   adding 'pyobo/xrefdb/sources/__init__.py'
2020-04-05T16:41:41,471   adding 'pyobo/xrefdb/sources/cbms2019.py'
2020-04-05T16:41:41,474   adding 'pyobo/xrefdb/sources/gilda.py'
2020-04-05T16:41:41,477   adding 'pyobo-0.1.1.dist-info/LICENSE'
2020-04-05T16:41:41,479   adding 'pyobo-0.1.1.dist-info/METADATA'
2020-04-05T16:41:41,481   adding 'pyobo-0.1.1.dist-info/WHEEL'
2020-04-05T16:41:41,482   adding 'pyobo-0.1.1.dist-info/entry_points.txt'
2020-04-05T16:41:41,484   adding 'pyobo-0.1.1.dist-info/top_level.txt'
2020-04-05T16:41:41,485   adding 'pyobo-0.1.1.dist-info/RECORD'
2020-04-05T16:41:41,501   removing build/bdist.linux-armv7l/wheel
2020-04-05T16:41:41,675   Building wheel for pyobo (setup.py): finished with status 'done'
2020-04-05T16:41:41,682   Created wheel for pyobo: filename=pyobo-0.1.1-py3-none-any.whl size=314436 sha256=da2094ee92c72567c905dfeec1e30fcdbe47414038a995892caeebcd3f1494e7
2020-04-05T16:41:41,683   Stored in directory: /tmp/pip-ephem-wheel-cache-65n0a293/wheels/b2/60/35/34c45b233c03a0dac5a9835c3029ea2f7196de52125e87f0ea
2020-04-05T16:41:41,686 Successfully built pyobo
2020-04-05T16:41:41,839 Cleaning up...
2020-04-05T16:41:41,840   Removing source in /tmp/pip-wheel-narwmhln/pyobo
2020-04-05T16:41:41,954 Removed build tracker: '/tmp/pip-req-tracker-p6rrhc5k'