2020-04-06T11:19:30,315 Created temporary directory: /tmp/pip-ephem-wheel-cache-0u90wv2l
2020-04-06T11:19:30,319 Created temporary directory: /tmp/pip-req-tracker-17__l8ji
2020-04-06T11:19:30,319 Initialized build tracking at /tmp/pip-req-tracker-17__l8ji
2020-04-06T11:19:30,320 Created build tracker: /tmp/pip-req-tracker-17__l8ji
2020-04-06T11:19:30,320 Entered build tracker: /tmp/pip-req-tracker-17__l8ji
2020-04-06T11:19:30,321 Created temporary directory: /tmp/pip-wheel-oxph0zv_
2020-04-06T11:19:30,326 1 location(s) to search for versions of abacat:
2020-04-06T11:19:30,326 * https://pypi.org/simple/abacat/
2020-04-06T11:19:30,326 Fetching project page and analyzing links: https://pypi.org/simple/abacat/
2020-04-06T11:19:30,327 Getting page https://pypi.org/simple/abacat/
2020-04-06T11:19:30,329 Found index url https://pypi.org/simple
2020-04-06T11:19:30,332 Getting credentials from keyring for https://pypi.org/simple
2020-04-06T11:19:30,332 Getting credentials from keyring for pypi.org
2020-04-06T11:19:30,598   Skipping link: No binaries permitted for abacat: https://files.pythonhosted.org/packages/49/b7/47b76991aeb8be244cff855861b544b3d62d0be5a6ed367ed14632e4311d/abacat-0.0.1a0-py3-none-any.whl#sha256=f3a649b3085cb4e5ae2b20bf6ae3d462cb4cd8c32e20dcec00b663e96628c78d (from https://pypi.org/simple/abacat/) (requires-python:>=3.6)
2020-04-06T11:19:30,599   Found link https://files.pythonhosted.org/packages/9c/34/71eb87a3472ddd799235a10a261ad5468559127036a5d1cbf4429efdb05c/abacat-0.0.1a0.tar.gz#sha256=2be131909ba58715852ba4ea9a19e7c0b053d75680547d0f022de55c59c29362 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6), version: 0.0.1a0
2020-04-06T11:19:30,600   Skipping link: No binaries permitted for abacat: https://files.pythonhosted.org/packages/c3/e2/367d5677f3729fbc25e396a358ad9d9525dbc648d8b567a8e3901a40a5ac/abacat-0.0.2a0-py3-none-any.whl#sha256=39d08daa3ef43320e647ea9d21ae719e4bfa0449d1c0c617a8ab1d736db93991 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6)
2020-04-06T11:19:30,600   Found link https://files.pythonhosted.org/packages/01/8c/ee963a04626e1d40618d98f3047c030b2b5b1c2000b0d586c470966b2dd9/abacat-0.0.2a0.tar.gz#sha256=498023427eb26b4313212427feb29775e1bcaf361a8dc945734bad3dd5b38d50 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6), version: 0.0.2a0
2020-04-06T11:19:30,607 Given no hashes to check 1 links for project 'abacat': discarding no candidates
2020-04-06T11:19:30,608 Using version 0.0.1a0 (newest of versions: 0.0.1a0)
2020-04-06T11:19:30,612 Collecting abacat==0.0.1a0
2020-04-06T11:19:30,615   Created temporary directory: /tmp/pip-unpack-xlq6jp91
2020-04-06T11:19:30,618   Getting credentials from keyring for files.pythonhosted.org
2020-04-06T11:19:32,228   Downloading abacat-0.0.1a0.tar.gz (19.7 MB)
2020-04-06T11:19:40,893   Added abacat==0.0.1a0 from https://files.pythonhosted.org/packages/9c/34/71eb87a3472ddd799235a10a261ad5468559127036a5d1cbf4429efdb05c/abacat-0.0.1a0.tar.gz#sha256=2be131909ba58715852ba4ea9a19e7c0b053d75680547d0f022de55c59c29362 to build tracker '/tmp/pip-req-tracker-17__l8ji'
2020-04-06T11:19:40,895     Running setup.py (path:/tmp/pip-wheel-oxph0zv_/abacat/setup.py) egg_info for package abacat
2020-04-06T11:19:40,896     Running command python setup.py egg_info
2020-04-06T11:19:42,458     running egg_info
2020-04-06T11:19:42,462     creating /tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info
2020-04-06T11:19:42,464     writing /tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/PKG-INFO
2020-04-06T11:19:42,467     writing dependency_links to /tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/dependency_links.txt
2020-04-06T11:19:42,470     writing requirements to /tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/requires.txt
2020-04-06T11:19:42,472     writing top-level names to /tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/top_level.txt
2020-04-06T11:19:42,475     writing manifest file '/tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:19:42,725     reading manifest file '/tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:19:42,727     reading manifest template 'MANIFEST.in'
2020-04-06T11:19:42,797     writing manifest file '/tmp/pip-wheel-oxph0zv_/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:19:42,799     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.0.1a' to '0.0.1a0'
2020-04-06T11:19:42,799       normalized_version,
2020-04-06T11:19:42,908   Source in /tmp/pip-wheel-oxph0zv_/abacat has version 0.0.1a0, which satisfies requirement abacat==0.0.1a0 from https://files.pythonhosted.org/packages/9c/34/71eb87a3472ddd799235a10a261ad5468559127036a5d1cbf4429efdb05c/abacat-0.0.1a0.tar.gz#sha256=2be131909ba58715852ba4ea9a19e7c0b053d75680547d0f022de55c59c29362
2020-04-06T11:19:42,910   Removed abacat==0.0.1a0 from https://files.pythonhosted.org/packages/9c/34/71eb87a3472ddd799235a10a261ad5468559127036a5d1cbf4429efdb05c/abacat-0.0.1a0.tar.gz#sha256=2be131909ba58715852ba4ea9a19e7c0b053d75680547d0f022de55c59c29362 from build tracker '/tmp/pip-req-tracker-17__l8ji'
2020-04-06T11:19:42,913 Building wheels for collected packages: abacat
2020-04-06T11:19:42,920   Created temporary directory: /tmp/pip-wheel-0tfir6fv
2020-04-06T11:19:42,921   Building wheel for abacat (setup.py): started
2020-04-06T11:19:42,921   Destination directory: /tmp/pip-wheel-0tfir6fv
2020-04-06T11:19:42,922   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-oxph0zv_/abacat/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-oxph0zv_/abacat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0tfir6fv
2020-04-06T11:19:44,467   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.0.1a' to '0.0.1a0'
2020-04-06T11:19:44,467     normalized_version,
2020-04-06T11:19:44,541   running bdist_wheel
2020-04-06T11:19:44,555   running build
2020-04-06T11:19:44,556   running build_py
2020-04-06T11:19:44,809   creating build
2020-04-06T11:19:44,810   creating build/lib
2020-04-06T11:19:44,811   creating build/lib/tests
2020-04-06T11:19:44,813   copying tests/test_genome.py -> build/lib/tests
2020-04-06T11:19:44,818   copying tests/test_dendrogram.py -> build/lib/tests
2020-04-06T11:19:44,821   copying tests/__init__.py -> build/lib/tests
2020-04-06T11:19:44,825   creating build/lib/abacat
2020-04-06T11:19:44,827   copying abacat/genome.py -> build/lib/abacat
2020-04-06T11:19:44,832   copying abacat/prodigal.py -> build/lib/abacat
2020-04-06T11:19:44,835   copying abacat/dendrogram.py -> build/lib/abacat
2020-04-06T11:19:44,840   copying abacat/abacat_helper.py -> build/lib/abacat
2020-04-06T11:19:44,843   copying abacat/__init__.py -> build/lib/abacat
2020-04-06T11:19:44,846   copying abacat/config.py -> build/lib/abacat
2020-04-06T11:19:44,850   creating build/lib/abacat/pipelines
2020-04-06T11:19:44,851   copying abacat/pipelines/phenotyping.py -> build/lib/abacat/pipelines
2020-04-06T11:19:44,855   copying abacat/pipelines/annotate.py -> build/lib/abacat/pipelines
2020-04-06T11:19:44,858   copying abacat/pipelines/__init__.py -> build/lib/abacat/pipelines
2020-04-06T11:19:44,862   creating build/lib/abacat/deprecated
2020-04-06T11:19:44,863   copying abacat/deprecated/reports.py -> build/lib/abacat/deprecated
2020-04-06T11:19:44,867   copying abacat/deprecated/renamer.py -> build/lib/abacat/deprecated
2020-04-06T11:19:44,871   copying abacat/deprecated/prokka_parser.py -> build/lib/abacat/deprecated
2020-04-06T11:19:44,874   copying abacat/deprecated/prokka.py -> build/lib/abacat/deprecated
2020-04-06T11:19:44,878   copying abacat/deprecated/__init__.py -> build/lib/abacat/deprecated
2020-04-06T11:19:44,881   creating build/lib/abacat/data
2020-04-06T11:19:44,883   copying abacat/data/__init__.py -> build/lib/abacat/data
2020-04-06T11:19:44,888   creating build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,889   copying abacat/deprecated/genome_fetcher/extract_accession_id.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,893   copying abacat/deprecated/genome_fetcher/genome_fetcher.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,896   copying abacat/deprecated/genome_fetcher/genfetch.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,899   copying abacat/deprecated/genome_fetcher/parallel_genfet.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,905   copying abacat/deprecated/genome_fetcher/__init__.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,908   copying abacat/deprecated/genome_fetcher/config.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:19:44,912   running egg_info
2020-04-06T11:19:44,942   writing abacat.egg-info/PKG-INFO
2020-04-06T11:19:44,945   writing dependency_links to abacat.egg-info/dependency_links.txt
2020-04-06T11:19:44,948   writing requirements to abacat.egg-info/requires.txt
2020-04-06T11:19:44,951   writing top-level names to abacat.egg-info/top_level.txt
2020-04-06T11:19:44,963   reading manifest file 'abacat.egg-info/SOURCES.txt'
2020-04-06T11:19:44,968   reading manifest template 'MANIFEST.in'
2020-04-06T11:19:45,029   writing manifest file 'abacat.egg-info/SOURCES.txt'
2020-04-06T11:19:45,042   creating build/lib/abacat/data/__pycache__
2020-04-06T11:19:45,044   copying abacat/data/__pycache__/__init__.cpython-36.pyc -> build/lib/abacat/data/__pycache__
2020-04-06T11:19:45,047   copying abacat/data/__pycache__/__init__.cpython-37.pyc -> build/lib/abacat/data/__pycache__
2020-04-06T11:19:45,051   creating build/lib/abacat/data/db
2020-04-06T11:19:45,051   creating build/lib/abacat/data/db/megares
2020-04-06T11:19:45,059   copying abacat/data/db/megares/megares_annotations_v1.01.csv -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,083   copying abacat/data/db/megares/megares_database_v1.01.fasta -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,275   copying abacat/data/db/megares/megares_database_v1.01.fasta.nhr -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,307   copying abacat/data/db/megares/megares_database_v1.01.fasta.nin -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,312   copying abacat/data/db/megares/megares_database_v1.01.fasta.nsq -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,361   copying abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv -> build/lib/abacat/data/db/megares
2020-04-06T11:19:45,447   creating build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,449   copying abacat/data/db/phenotyping/pathways.json -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,454   copying abacat/data/db/phenotyping/phenotyping.fasta -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,468   copying abacat/data/db/phenotyping/phenotyping.fasta.phr -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,476   copying abacat/data/db/phenotyping/phenotyping.fasta.pin -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,483   copying abacat/data/db/phenotyping/phenotyping.fasta.psq -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:19:45,495   creating build/lib/abacat/data/genomes
2020-04-06T11:19:45,497   copying abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,615   copying abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,644   copying abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,754   copying abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,807   copying abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,933   copying abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:45,968   copying abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,096   copying abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,152   copying abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,265   copying abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,295   copying abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,400   copying abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,446   copying abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,580   copying abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,612   copying abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,751   copying abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,805   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,931   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,934   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,940   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits -> build/lib/abacat/data/genomes
2020-04-06T11:19:46,943   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,068   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,105   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,226   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,283   copying abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,506   copying abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,564   copying abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,787   copying abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:47,888   copying abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:48,227   copying abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_cds.gbk -> build/lib/abacat/data/genomes
2020-04-06T11:19:48,263   copying abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_genes.fna -> build/lib/abacat/data/genomes
2020-04-06T11:19:48,400   copying abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_proteins.faa -> build/lib/abacat/data/genomes
2020-04-06T11:19:48,456   copying abacat/data/genomes/key_file.tsv -> build/lib/abacat/data/genomes
2020-04-06T11:19:48,480   installing to build/bdist.linux-armv7l/wheel
2020-04-06T11:19:48,481   running install
2020-04-06T11:19:48,484   running install_lib
2020-04-06T11:19:48,489   creating build/bdist.linux-armv7l
2020-04-06T11:19:48,490   creating build/bdist.linux-armv7l/wheel
2020-04-06T11:19:48,493   creating build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:19:48,494   copying build/lib/tests/test_genome.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:19:48,498   copying build/lib/tests/test_dendrogram.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:19:48,501   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:19:48,505   creating build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:48,507   creating build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:19:48,509   copying build/lib/abacat/pipelines/phenotyping.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:19:48,513   copying build/lib/abacat/pipelines/annotate.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:19:48,516   copying build/lib/abacat/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:19:48,519   copying build/lib/abacat/genome.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:48,524   copying build/lib/abacat/prodigal.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:48,527   copying build/lib/abacat/dendrogram.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:48,531   copying build/lib/abacat/abacat_helper.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:48,535   creating build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,537   copying build/lib/abacat/deprecated/reports.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,540   copying build/lib/abacat/deprecated/renamer.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,544   copying build/lib/abacat/deprecated/prokka_parser.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,547   copying build/lib/abacat/deprecated/prokka.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,552   creating build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,553   copying build/lib/abacat/deprecated/genome_fetcher/extract_accession_id.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,557   copying build/lib/abacat/deprecated/genome_fetcher/genome_fetcher.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,560   copying build/lib/abacat/deprecated/genome_fetcher/genfetch.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,568   copying build/lib/abacat/deprecated/genome_fetcher/parallel_genfet.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,571   copying build/lib/abacat/deprecated/genome_fetcher/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,574   copying build/lib/abacat/deprecated/genome_fetcher/config.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:19:48,578   copying build/lib/abacat/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:19:48,582   creating build/bdist.linux-armv7l/wheel/abacat/data
2020-04-06T11:19:48,585   creating build/bdist.linux-armv7l/wheel/abacat/data/db
2020-04-06T11:19:48,589   creating build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,591   copying build/lib/abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,672   copying build/lib/abacat/data/db/megares/megares_annotations_v1.01.csv -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,696   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nin -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,701   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,884   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nhr -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,910   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nsq -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:19:48,957   creating build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,958   copying build/lib/abacat/data/db/phenotyping/pathways.json -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,962   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.pin -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,965   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.psq -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,975   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.phr -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,981   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:19:48,993   creating build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:19:48,994   copying build/lib/abacat/data/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:19:48,998   copying build/lib/abacat/data/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:19:49,002   creating build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,004   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,126   copying build/lib/abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,221   copying build/lib/abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,328   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,455   copying build/lib/abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,570   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,694   copying build/lib/abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,726   copying build/lib/abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,856   copying build/lib/abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,913   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:49,948   copying build/lib/abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,073   copying build/lib/abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,127   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,134   copying build/lib/abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,187   copying build/lib/abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,222   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,274   copying build/lib/abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,493   copying build/lib/abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,610   copying build/lib/abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,717   copying build/lib/abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,764   copying build/lib/abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:50,831   copying build/lib/abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,078   copying build/lib/abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_proteins.faa -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,132   copying build/lib/abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,164   copying build/lib/abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,194   copying build/lib/abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_cds.gbk -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,233   copying build/lib/abacat/data/genomes/key_file.tsv -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,238   copying build/lib/abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,381   copying build/lib/abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,500   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,503   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,506   copying build/lib/abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,630   copying build/lib/abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_genes.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:19:51,759   copying build/lib/abacat/data/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/data
2020-04-06T11:19:51,763   copying build/lib/abacat/__init__.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:51,767   copying build/lib/abacat/config.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:19:51,771   running install_egg_info
2020-04-06T11:19:51,793   Copying abacat.egg-info to build/bdist.linux-armv7l/wheel/abacat-0.0.1a0-py3.7.egg-info
2020-04-06T11:19:52,529   running install_scripts
2020-04-06T11:19:52,661   creating build/bdist.linux-armv7l/wheel/abacat-0.0.1a0.dist-info/WHEEL
2020-04-06T11:19:52,666   creating '/tmp/pip-wheel-0tfir6fv/abacat-0.0.1a0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-04-06T11:19:52,670   adding 'abacat/__init__.py'
2020-04-06T11:19:52,673   adding 'abacat/abacat_helper.py'
2020-04-06T11:19:52,676   adding 'abacat/config.py'
2020-04-06T11:19:52,680   adding 'abacat/dendrogram.py'
2020-04-06T11:19:52,685   adding 'abacat/genome.py'
2020-04-06T11:19:52,688   adding 'abacat/prodigal.py'
2020-04-06T11:19:52,692   adding 'abacat/data/__init__.py'
2020-04-06T11:19:52,695   adding 'abacat/data/__pycache__/__init__.cpython-36.pyc'
2020-04-06T11:19:52,702   adding 'abacat/data/__pycache__/__init__.cpython-37.pyc'
2020-04-06T11:19:52,752   adding 'abacat/data/db/megares/megares_annotations_v1.01.csv'
2020-04-06T11:19:54,987   adding 'abacat/data/db/megares/megares_database_v1.01.fasta'
2020-04-06T11:19:55,090   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nhr'
2020-04-06T11:19:55,106   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nin'
2020-04-06T11:19:55,247   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nsq'
2020-04-06T11:19:55,515   adding 'abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv'
2020-04-06T11:19:55,536   adding 'abacat/data/db/phenotyping/pathways.json'
2020-04-06T11:19:55,563   adding 'abacat/data/db/phenotyping/phenotyping.fasta'
2020-04-06T11:19:55,570   adding 'abacat/data/db/phenotyping/phenotyping.fasta.phr'
2020-04-06T11:19:55,573   adding 'abacat/data/db/phenotyping/phenotyping.fasta.pin'
2020-04-06T11:19:55,598   adding 'abacat/data/db/phenotyping/phenotyping.fasta.psq'
2020-04-06T11:19:57,315   adding 'abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna'
2020-04-06T11:19:57,406   adding 'abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_cds.gbk'
2020-04-06T11:19:58,882   adding 'abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_genes.fna'
2020-04-06T11:19:59,102   adding 'abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:00,886   adding 'abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna'
2020-04-06T11:20:00,987   adding 'abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_cds.gbk'
2020-04-06T11:20:02,638   adding 'abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_genes.fna'
2020-04-06T11:20:02,900   adding 'abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:04,496   adding 'abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna'
2020-04-06T11:20:04,585   adding 'abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_cds.gbk'
2020-04-06T11:20:05,973   adding 'abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_genes.fna'
2020-04-06T11:20:06,189   adding 'abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:07,984   adding 'abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna'
2020-04-06T11:20:08,084   adding 'abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_cds.gbk'
2020-04-06T11:20:09,733   adding 'abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_genes.fna'
2020-04-06T11:20:09,999   adding 'abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:11,900   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna'
2020-04-06T11:20:11,932   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json'
2020-04-06T11:20:11,958   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta'
2020-04-06T11:20:11,961   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits'
2020-04-06T11:20:12,131   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml'
2020-04-06T11:20:12,231   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_cds.gbk'
2020-04-06T11:20:13,874   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_genes.fna'
2020-04-06T11:20:14,121   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:17,413   adding 'abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna'
2020-04-06T11:20:17,593   adding 'abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_cds.gbk'
2020-04-06T11:20:20,610   adding 'abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_genes.fna'
2020-04-06T11:20:21,070   adding 'abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic_prodigal_proteins.faa'
2020-04-06T11:20:23,071   adding 'abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna'
2020-04-06T11:20:23,178   adding 'abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_cds.gbk'
2020-04-06T11:20:24,881   adding 'abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_genes.fna'
2020-04-06T11:20:25,137   adding 'abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic_prodigal_proteins.faa'
2020-04-06T11:20:25,151   adding 'abacat/data/genomes/key_file.tsv'
2020-04-06T11:20:25,155   adding 'abacat/deprecated/__init__.py'
2020-04-06T11:20:25,157   adding 'abacat/deprecated/prokka.py'
2020-04-06T11:20:25,159   adding 'abacat/deprecated/prokka_parser.py'
2020-04-06T11:20:25,162   adding 'abacat/deprecated/renamer.py'
2020-04-06T11:20:25,164   adding 'abacat/deprecated/reports.py'
2020-04-06T11:20:25,167   adding 'abacat/deprecated/genome_fetcher/__init__.py'
2020-04-06T11:20:25,169   adding 'abacat/deprecated/genome_fetcher/config.py'
2020-04-06T11:20:25,171   adding 'abacat/deprecated/genome_fetcher/extract_accession_id.py'
2020-04-06T11:20:25,174   adding 'abacat/deprecated/genome_fetcher/genfetch.py'
2020-04-06T11:20:25,176   adding 'abacat/deprecated/genome_fetcher/genome_fetcher.py'
2020-04-06T11:20:25,178   adding 'abacat/deprecated/genome_fetcher/parallel_genfet.py'
2020-04-06T11:20:25,181   adding 'abacat/pipelines/__init__.py'
2020-04-06T11:20:25,183   adding 'abacat/pipelines/annotate.py'
2020-04-06T11:20:25,185   adding 'abacat/pipelines/phenotyping.py'
2020-04-06T11:20:25,190   adding 'tests/__init__.py'
2020-04-06T11:20:25,192   adding 'tests/test_dendrogram.py'
2020-04-06T11:20:25,195   adding 'tests/test_genome.py'
2020-04-06T11:20:25,196   adding 'abacat-0.0.1a0.dist-info/METADATA'
2020-04-06T11:20:25,198   adding 'abacat-0.0.1a0.dist-info/WHEEL'
2020-04-06T11:20:25,200   adding 'abacat-0.0.1a0.dist-info/top_level.txt'
2020-04-06T11:20:25,201   adding 'abacat-0.0.1a0.dist-info/RECORD'
2020-04-06T11:20:25,864   removing build/bdist.linux-armv7l/wheel
2020-04-06T11:20:26,968   Building wheel for abacat (setup.py): finished with status 'done'
2020-04-06T11:20:27,222   Created wheel for abacat: filename=abacat-0.0.1a0-py3-none-any.whl size=20348690 sha256=173dd538846ffc4ca6604b0f8745176b08fd2244d04ecf374e552ee367c7f53d
2020-04-06T11:20:27,223   Stored in directory: /tmp/pip-ephem-wheel-cache-0u90wv2l/wheels/60/72/bf/015c5744f13414a32eaef188da4b5d7f0177fda0d532d17515
2020-04-06T11:20:27,226 Successfully built abacat
2020-04-06T11:20:33,097 Cleaning up...
2020-04-06T11:20:33,098   Removing source in /tmp/pip-wheel-oxph0zv_/abacat
2020-04-06T11:20:33,352 Removed build tracker: '/tmp/pip-req-tracker-17__l8ji'