2020-04-06T11:29:57,947 Created temporary directory: /tmp/pip-ephem-wheel-cache-xcgua8vb
2020-04-06T11:29:57,951 Created temporary directory: /tmp/pip-req-tracker-rk8v211v
2020-04-06T11:29:57,951 Initialized build tracking at /tmp/pip-req-tracker-rk8v211v
2020-04-06T11:29:57,952 Created build tracker: /tmp/pip-req-tracker-rk8v211v
2020-04-06T11:29:57,952 Entered build tracker: /tmp/pip-req-tracker-rk8v211v
2020-04-06T11:29:57,953 Created temporary directory: /tmp/pip-wheel-vuz78t_h
2020-04-06T11:29:57,958 1 location(s) to search for versions of abacat:
2020-04-06T11:29:57,958 * https://pypi.org/simple/abacat/
2020-04-06T11:29:57,959 Fetching project page and analyzing links: https://pypi.org/simple/abacat/
2020-04-06T11:29:57,959 Getting page https://pypi.org/simple/abacat/
2020-04-06T11:29:57,961 Found index url https://pypi.org/simple
2020-04-06T11:29:57,964 Getting credentials from keyring for https://pypi.org/simple
2020-04-06T11:29:57,964 Getting credentials from keyring for pypi.org
2020-04-06T11:29:58,141   Skipping link: No binaries permitted for abacat: https://files.pythonhosted.org/packages/49/b7/47b76991aeb8be244cff855861b544b3d62d0be5a6ed367ed14632e4311d/abacat-0.0.1a0-py3-none-any.whl#sha256=f3a649b3085cb4e5ae2b20bf6ae3d462cb4cd8c32e20dcec00b663e96628c78d (from https://pypi.org/simple/abacat/) (requires-python:>=3.6)
2020-04-06T11:29:58,142   Found link https://files.pythonhosted.org/packages/9c/34/71eb87a3472ddd799235a10a261ad5468559127036a5d1cbf4429efdb05c/abacat-0.0.1a0.tar.gz#sha256=2be131909ba58715852ba4ea9a19e7c0b053d75680547d0f022de55c59c29362 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6), version: 0.0.1a0
2020-04-06T11:29:58,143   Skipping link: No binaries permitted for abacat: https://files.pythonhosted.org/packages/c3/e2/367d5677f3729fbc25e396a358ad9d9525dbc648d8b567a8e3901a40a5ac/abacat-0.0.2a0-py3-none-any.whl#sha256=39d08daa3ef43320e647ea9d21ae719e4bfa0449d1c0c617a8ab1d736db93991 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6)
2020-04-06T11:29:58,144   Found link https://files.pythonhosted.org/packages/01/8c/ee963a04626e1d40618d98f3047c030b2b5b1c2000b0d586c470966b2dd9/abacat-0.0.2a0.tar.gz#sha256=498023427eb26b4313212427feb29775e1bcaf361a8dc945734bad3dd5b38d50 (from https://pypi.org/simple/abacat/) (requires-python:>=3.6), version: 0.0.2a0
2020-04-06T11:29:58,150 Given no hashes to check 1 links for project 'abacat': discarding no candidates
2020-04-06T11:29:58,151 Using version 0.0.2a0 (newest of versions: 0.0.2a0)
2020-04-06T11:29:58,156 Collecting abacat==0.0.2a0
2020-04-06T11:29:58,159   Created temporary directory: /tmp/pip-unpack-yvl5di1f
2020-04-06T11:29:58,161   Getting credentials from keyring for files.pythonhosted.org
2020-04-06T11:29:58,890   Downloading abacat-0.0.2a0.tar.gz (8.9 MB)
2020-04-06T11:30:03,832   Added abacat==0.0.2a0 from https://files.pythonhosted.org/packages/01/8c/ee963a04626e1d40618d98f3047c030b2b5b1c2000b0d586c470966b2dd9/abacat-0.0.2a0.tar.gz#sha256=498023427eb26b4313212427feb29775e1bcaf361a8dc945734bad3dd5b38d50 to build tracker '/tmp/pip-req-tracker-rk8v211v'
2020-04-06T11:30:03,833     Running setup.py (path:/tmp/pip-wheel-vuz78t_h/abacat/setup.py) egg_info for package abacat
2020-04-06T11:30:03,834     Running command python setup.py egg_info
2020-04-06T11:30:05,388     running egg_info
2020-04-06T11:30:05,392     creating /tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info
2020-04-06T11:30:05,394     writing /tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/PKG-INFO
2020-04-06T11:30:05,397     writing dependency_links to /tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/dependency_links.txt
2020-04-06T11:30:05,400     writing requirements to /tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/requires.txt
2020-04-06T11:30:05,402     writing top-level names to /tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/top_level.txt
2020-04-06T11:30:05,405     writing manifest file '/tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:30:05,656     reading manifest file '/tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:30:05,658     reading manifest template 'MANIFEST.in'
2020-04-06T11:30:05,700     writing manifest file '/tmp/pip-wheel-vuz78t_h/abacat/pip-egg-info/abacat.egg-info/SOURCES.txt'
2020-04-06T11:30:05,703     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.0.2a' to '0.0.2a0'
2020-04-06T11:30:05,703       normalized_version,
2020-04-06T11:30:05,812   Source in /tmp/pip-wheel-vuz78t_h/abacat has version 0.0.2a0, which satisfies requirement abacat==0.0.2a0 from https://files.pythonhosted.org/packages/01/8c/ee963a04626e1d40618d98f3047c030b2b5b1c2000b0d586c470966b2dd9/abacat-0.0.2a0.tar.gz#sha256=498023427eb26b4313212427feb29775e1bcaf361a8dc945734bad3dd5b38d50
2020-04-06T11:30:05,813   Removed abacat==0.0.2a0 from https://files.pythonhosted.org/packages/01/8c/ee963a04626e1d40618d98f3047c030b2b5b1c2000b0d586c470966b2dd9/abacat-0.0.2a0.tar.gz#sha256=498023427eb26b4313212427feb29775e1bcaf361a8dc945734bad3dd5b38d50 from build tracker '/tmp/pip-req-tracker-rk8v211v'
2020-04-06T11:30:05,817 Building wheels for collected packages: abacat
2020-04-06T11:30:05,823   Created temporary directory: /tmp/pip-wheel-4rsffu58
2020-04-06T11:30:05,824   Building wheel for abacat (setup.py): started
2020-04-06T11:30:05,824   Destination directory: /tmp/pip-wheel-4rsffu58
2020-04-06T11:30:05,825   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vuz78t_h/abacat/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vuz78t_h/abacat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4rsffu58
2020-04-06T11:30:07,289   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:476: UserWarning: Normalizing '0.0.2a' to '0.0.2a0'
2020-04-06T11:30:07,290     normalized_version,
2020-04-06T11:30:07,355   running bdist_wheel
2020-04-06T11:30:07,366   running build
2020-04-06T11:30:07,366   running build_py
2020-04-06T11:30:07,599   creating build
2020-04-06T11:30:07,600   creating build/lib
2020-04-06T11:30:07,601   creating build/lib/tests
2020-04-06T11:30:07,603   copying tests/test_genome.py -> build/lib/tests
2020-04-06T11:30:07,607   copying tests/test_dendrogram.py -> build/lib/tests
2020-04-06T11:30:07,610   copying tests/__init__.py -> build/lib/tests
2020-04-06T11:30:07,613   creating build/lib/abacat
2020-04-06T11:30:07,615   copying abacat/genome.py -> build/lib/abacat
2020-04-06T11:30:07,619   copying abacat/prodigal.py -> build/lib/abacat
2020-04-06T11:30:07,622   copying abacat/dendrogram.py -> build/lib/abacat
2020-04-06T11:30:07,626   copying abacat/abacat_helper.py -> build/lib/abacat
2020-04-06T11:30:07,629   copying abacat/__init__.py -> build/lib/abacat
2020-04-06T11:30:07,632   copying abacat/config.py -> build/lib/abacat
2020-04-06T11:30:07,636   creating build/lib/abacat/pipelines
2020-04-06T11:30:07,638   copying abacat/pipelines/phenotyping.py -> build/lib/abacat/pipelines
2020-04-06T11:30:07,643   copying abacat/pipelines/annotate.py -> build/lib/abacat/pipelines
2020-04-06T11:30:07,647   copying abacat/pipelines/__init__.py -> build/lib/abacat/pipelines
2020-04-06T11:30:07,654   creating build/lib/abacat/deprecated
2020-04-06T11:30:07,656   copying abacat/deprecated/reports.py -> build/lib/abacat/deprecated
2020-04-06T11:30:07,659   copying abacat/deprecated/renamer.py -> build/lib/abacat/deprecated
2020-04-06T11:30:07,663   copying abacat/deprecated/prokka_parser.py -> build/lib/abacat/deprecated
2020-04-06T11:30:07,666   copying abacat/deprecated/prokka.py -> build/lib/abacat/deprecated
2020-04-06T11:30:07,669   copying abacat/deprecated/__init__.py -> build/lib/abacat/deprecated
2020-04-06T11:30:07,673   creating build/lib/abacat/data
2020-04-06T11:30:07,674   copying abacat/data/__init__.py -> build/lib/abacat/data
2020-04-06T11:30:07,679   creating build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,680   copying abacat/deprecated/genome_fetcher/extract_accession_id.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,683   copying abacat/deprecated/genome_fetcher/genome_fetcher.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,686   copying abacat/deprecated/genome_fetcher/genfetch.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,689   copying abacat/deprecated/genome_fetcher/parallel_genfet.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,692   copying abacat/deprecated/genome_fetcher/__init__.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,695   copying abacat/deprecated/genome_fetcher/config.py -> build/lib/abacat/deprecated/genome_fetcher
2020-04-06T11:30:07,697   running egg_info
2020-04-06T11:30:07,718   writing abacat.egg-info/PKG-INFO
2020-04-06T11:30:07,721   writing dependency_links to abacat.egg-info/dependency_links.txt
2020-04-06T11:30:07,724   writing requirements to abacat.egg-info/requires.txt
2020-04-06T11:30:07,726   writing top-level names to abacat.egg-info/top_level.txt
2020-04-06T11:30:07,741   reading manifest file 'abacat.egg-info/SOURCES.txt'
2020-04-06T11:30:07,745   reading manifest template 'MANIFEST.in'
2020-04-06T11:30:07,776   writing manifest file 'abacat.egg-info/SOURCES.txt'
2020-04-06T11:30:07,785   creating build/lib/abacat/data/__pycache__
2020-04-06T11:30:07,786   copying abacat/data/__pycache__/__init__.cpython-36.pyc -> build/lib/abacat/data/__pycache__
2020-04-06T11:30:07,790   copying abacat/data/__pycache__/__init__.cpython-37.pyc -> build/lib/abacat/data/__pycache__
2020-04-06T11:30:07,793   creating build/lib/abacat/data/db
2020-04-06T11:30:07,794   creating build/lib/abacat/data/db/megares
2020-04-06T11:30:07,796   copying abacat/data/db/megares/megares_annotations_v1.01.csv -> build/lib/abacat/data/db/megares
2020-04-06T11:30:07,820   copying abacat/data/db/megares/megares_database_v1.01.fasta -> build/lib/abacat/data/db/megares
2020-04-06T11:30:08,011   copying abacat/data/db/megares/megares_database_v1.01.fasta.nhr -> build/lib/abacat/data/db/megares
2020-04-06T11:30:08,047   copying abacat/data/db/megares/megares_database_v1.01.fasta.nin -> build/lib/abacat/data/db/megares
2020-04-06T11:30:08,054   copying abacat/data/db/megares/megares_database_v1.01.fasta.nsq -> build/lib/abacat/data/db/megares
2020-04-06T11:30:08,099   copying abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv -> build/lib/abacat/data/db/megares
2020-04-06T11:30:08,176   creating build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,178   copying abacat/data/db/phenotyping/pathways.json -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,183   copying abacat/data/db/phenotyping/phenotyping.fasta -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,197   copying abacat/data/db/phenotyping/phenotyping.fasta.phr -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,206   copying abacat/data/db/phenotyping/phenotyping.fasta.pin -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,212   copying abacat/data/db/phenotyping/phenotyping.fasta.psq -> build/lib/abacat/data/db/phenotyping
2020-04-06T11:30:08,228   creating build/lib/abacat/data/genomes
2020-04-06T11:30:08,231   copying abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,360   copying abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,479   copying abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,593   copying abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,727   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,863   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,867   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,874   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits -> build/lib/abacat/data/genomes
2020-04-06T11:30:08,878   copying abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml -> build/lib/abacat/data/genomes
2020-04-06T11:30:09,001   copying abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:09,224   copying abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna -> build/lib/abacat/data/genomes
2020-04-06T11:30:09,377   copying abacat/data/genomes/key_file.tsv -> build/lib/abacat/data/genomes
2020-04-06T11:30:09,387   running build_scripts
2020-04-06T11:30:09,388   creating build/scripts-3.7
2020-04-06T11:30:09,391   copying abacat/prodigal.py -> build/scripts-3.7
2020-04-06T11:30:09,396   copying and adjusting abacat/pipelines/annotate.py -> build/scripts-3.7
2020-04-06T11:30:09,399   copying and adjusting abacat/pipelines/phenotyping.py -> build/scripts-3.7
2020-04-06T11:30:09,403   copying abacat/deprecated/prokka.py -> build/scripts-3.7
2020-04-06T11:30:09,406   changing mode of build/scripts-3.7/prodigal.py from 644 to 755
2020-04-06T11:30:09,408   changing mode of build/scripts-3.7/annotate.py from 644 to 755
2020-04-06T11:30:09,409   changing mode of build/scripts-3.7/phenotyping.py from 644 to 755
2020-04-06T11:30:09,410   changing mode of build/scripts-3.7/prokka.py from 644 to 755
2020-04-06T11:30:09,416   installing to build/bdist.linux-armv7l/wheel
2020-04-06T11:30:09,416   running install
2020-04-06T11:30:09,419   running install_lib
2020-04-06T11:30:09,425   creating build/bdist.linux-armv7l
2020-04-06T11:30:09,426   creating build/bdist.linux-armv7l/wheel
2020-04-06T11:30:09,430   creating build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:30:09,433   copying build/lib/tests/test_genome.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:30:09,438   copying build/lib/tests/test_dendrogram.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:30:09,442   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2020-04-06T11:30:09,447   creating build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:09,450   creating build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:30:09,453   copying build/lib/abacat/pipelines/phenotyping.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:30:09,459   copying build/lib/abacat/pipelines/annotate.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:30:09,465   copying build/lib/abacat/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/pipelines
2020-04-06T11:30:09,471   copying build/lib/abacat/genome.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:09,478   copying build/lib/abacat/prodigal.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:09,482   copying build/lib/abacat/dendrogram.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:09,487   copying build/lib/abacat/abacat_helper.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:09,491   creating build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,493   copying build/lib/abacat/deprecated/reports.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,497   copying build/lib/abacat/deprecated/renamer.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,504   copying build/lib/abacat/deprecated/prokka_parser.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,510   copying build/lib/abacat/deprecated/prokka.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,518   creating build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,520   copying build/lib/abacat/deprecated/genome_fetcher/extract_accession_id.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,524   copying build/lib/abacat/deprecated/genome_fetcher/genome_fetcher.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,528   copying build/lib/abacat/deprecated/genome_fetcher/genfetch.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,532   copying build/lib/abacat/deprecated/genome_fetcher/parallel_genfet.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,536   copying build/lib/abacat/deprecated/genome_fetcher/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,540   copying build/lib/abacat/deprecated/genome_fetcher/config.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated/genome_fetcher
2020-04-06T11:30:09,544   copying build/lib/abacat/deprecated/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/deprecated
2020-04-06T11:30:09,549   creating build/bdist.linux-armv7l/wheel/abacat/data
2020-04-06T11:30:09,552   creating build/bdist.linux-armv7l/wheel/abacat/data/db
2020-04-06T11:30:09,555   creating build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,558   copying build/lib/abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,631   copying build/lib/abacat/data/db/megares/megares_annotations_v1.01.csv -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,658   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nin -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,666   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,859   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nhr -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,888   copying build/lib/abacat/data/db/megares/megares_database_v1.01.fasta.nsq -> build/bdist.linux-armv7l/wheel/abacat/data/db/megares
2020-04-06T11:30:09,939   creating build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,942   copying build/lib/abacat/data/db/phenotyping/pathways.json -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,949   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.pin -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,954   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.psq -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,967   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta.phr -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,972   copying build/lib/abacat/data/db/phenotyping/phenotyping.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/db/phenotyping
2020-04-06T11:30:09,985   creating build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:30:09,987   copying build/lib/abacat/data/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:30:09,992   copying build/lib/abacat/data/__pycache__/__init__.cpython-37.pyc -> build/bdist.linux-armv7l/wheel/abacat/data/__pycache__
2020-04-06T11:30:09,998   creating build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,000   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,157   copying build/lib/abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,273   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,400   copying build/lib/abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,540   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,546   copying build/lib/abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,665   copying build/lib/abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,889   copying build/lib/abacat/data/genomes/key_file.tsv -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:10,894   copying build/lib/abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:11,021   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:11,025   copying build/lib/abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:11,029   copying build/lib/abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna -> build/bdist.linux-armv7l/wheel/abacat/data/genomes
2020-04-06T11:30:11,157   copying build/lib/abacat/data/__init__.py -> build/bdist.linux-armv7l/wheel/abacat/data
2020-04-06T11:30:11,163   copying build/lib/abacat/__init__.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:11,167   copying build/lib/abacat/config.py -> build/bdist.linux-armv7l/wheel/abacat
2020-04-06T11:30:11,171   running install_egg_info
2020-04-06T11:30:11,187   Copying abacat.egg-info to build/bdist.linux-armv7l/wheel/abacat-0.0.2a0-py3.7.egg-info
2020-04-06T11:30:11,207   running install_scripts
2020-04-06T11:30:11,302   creating build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data
2020-04-06T11:30:11,303   creating build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts
2020-04-06T11:30:11,306   copying build/scripts-3.7/phenotyping.py -> build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts
2020-04-06T11:30:11,310   copying build/scripts-3.7/prodigal.py -> build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts
2020-04-06T11:30:11,314   copying build/scripts-3.7/prokka.py -> build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts
2020-04-06T11:30:11,318   copying build/scripts-3.7/annotate.py -> build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts
2020-04-06T11:30:11,322   changing mode of build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts/phenotyping.py to 755
2020-04-06T11:30:11,323   changing mode of build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts/prodigal.py to 755
2020-04-06T11:30:11,324   changing mode of build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts/prokka.py to 755
2020-04-06T11:30:11,325   changing mode of build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.data/scripts/annotate.py to 755
2020-04-06T11:30:11,369   creating build/bdist.linux-armv7l/wheel/abacat-0.0.2a0.dist-info/WHEEL
2020-04-06T11:30:11,375   creating '/tmp/pip-wheel-4rsffu58/abacat-0.0.2a0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-04-06T11:30:11,379   adding 'abacat/__init__.py'
2020-04-06T11:30:11,382   adding 'abacat/abacat_helper.py'
2020-04-06T11:30:11,385   adding 'abacat/config.py'
2020-04-06T11:30:11,389   adding 'abacat/dendrogram.py'
2020-04-06T11:30:11,394   adding 'abacat/genome.py'
2020-04-06T11:30:11,397   adding 'abacat/prodigal.py'
2020-04-06T11:30:11,401   adding 'abacat/data/__init__.py'
2020-04-06T11:30:11,405   adding 'abacat/data/__pycache__/__init__.cpython-36.pyc'
2020-04-06T11:30:11,408   adding 'abacat/data/__pycache__/__init__.cpython-37.pyc'
2020-04-06T11:30:11,457   adding 'abacat/data/db/megares/megares_annotations_v1.01.csv'
2020-04-06T11:30:13,663   adding 'abacat/data/db/megares/megares_database_v1.01.fasta'
2020-04-06T11:30:13,766   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nhr'
2020-04-06T11:30:13,782   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nin'
2020-04-06T11:30:13,924   adding 'abacat/data/db/megares/megares_database_v1.01.fasta.nsq'
2020-04-06T11:30:14,191   adding 'abacat/data/db/megares/megares_to_external_header_mappings_v1.01.tsv'
2020-04-06T11:30:14,211   adding 'abacat/data/db/phenotyping/pathways.json'
2020-04-06T11:30:14,239   adding 'abacat/data/db/phenotyping/phenotyping.fasta'
2020-04-06T11:30:14,246   adding 'abacat/data/db/phenotyping/phenotyping.fasta.phr'
2020-04-06T11:30:14,249   adding 'abacat/data/db/phenotyping/phenotyping.fasta.pin'
2020-04-06T11:30:14,274   adding 'abacat/data/db/phenotyping/phenotyping.fasta.psq'
2020-04-06T11:30:15,981   adding 'abacat/data/genomes/GCF_000007645.1_ASM764v1_genomic.fna'
2020-04-06T11:30:17,768   adding 'abacat/data/genomes/GCF_000010065.1_ASM1006v1_genomic.fna'
2020-04-06T11:30:19,385   adding 'abacat/data/genomes/GCF_000011485.1_ASM1148v1_genomic.fna'
2020-04-06T11:30:21,200   adding 'abacat/data/genomes/GCF_000012525.1_ASM1252v1_genomic.fna'
2020-04-06T11:30:23,125   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.fna'
2020-04-06T11:30:23,158   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic.json'
2020-04-06T11:30:23,183   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.fasta'
2020-04-06T11:30:23,186   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares.hits'
2020-04-06T11:30:23,358   adding 'abacat/data/genomes/GCF_001021895.1_ASM102189v1_genomic_megares_blast.xml'
2020-04-06T11:30:26,651   adding 'abacat/data/genomes/GCF_003697165.2_ASM369716v2_genomic.fna'
2020-04-06T11:30:28,660   adding 'abacat/data/genomes/GCF_008619075.1_ASM861907v1_genomic.fna'
2020-04-06T11:30:28,694   adding 'abacat/data/genomes/key_file.tsv'
2020-04-06T11:30:28,697   adding 'abacat/deprecated/__init__.py'
2020-04-06T11:30:28,699   adding 'abacat/deprecated/prokka.py'
2020-04-06T11:30:28,702   adding 'abacat/deprecated/prokka_parser.py'
2020-04-06T11:30:28,705   adding 'abacat/deprecated/renamer.py'
2020-04-06T11:30:28,707   adding 'abacat/deprecated/reports.py'
2020-04-06T11:30:28,710   adding 'abacat/deprecated/genome_fetcher/__init__.py'
2020-04-06T11:30:28,712   adding 'abacat/deprecated/genome_fetcher/config.py'
2020-04-06T11:30:28,714   adding 'abacat/deprecated/genome_fetcher/extract_accession_id.py'
2020-04-06T11:30:28,716   adding 'abacat/deprecated/genome_fetcher/genfetch.py'
2020-04-06T11:30:28,719   adding 'abacat/deprecated/genome_fetcher/genome_fetcher.py'
2020-04-06T11:30:28,721   adding 'abacat/deprecated/genome_fetcher/parallel_genfet.py'
2020-04-06T11:30:28,724   adding 'abacat/pipelines/__init__.py'
2020-04-06T11:30:28,726   adding 'abacat/pipelines/annotate.py'
2020-04-06T11:30:28,729   adding 'abacat/pipelines/phenotyping.py'
2020-04-06T11:30:28,733   adding 'abacat-0.0.2a0.data/scripts/annotate.py'
2020-04-06T11:30:28,735   adding 'abacat-0.0.2a0.data/scripts/phenotyping.py'
2020-04-06T11:30:28,738   adding 'abacat-0.0.2a0.data/scripts/prodigal.py'
2020-04-06T11:30:28,740   adding 'abacat-0.0.2a0.data/scripts/prokka.py'
2020-04-06T11:30:28,745   adding 'tests/__init__.py'
2020-04-06T11:30:28,747   adding 'tests/test_dendrogram.py'
2020-04-06T11:30:28,749   adding 'tests/test_genome.py'
2020-04-06T11:30:28,751   adding 'abacat-0.0.2a0.dist-info/METADATA'
2020-04-06T11:30:28,753   adding 'abacat-0.0.2a0.dist-info/WHEEL'
2020-04-06T11:30:28,755   adding 'abacat-0.0.2a0.dist-info/top_level.txt'
2020-04-06T11:30:28,757   adding 'abacat-0.0.2a0.dist-info/RECORD'
2020-04-06T11:30:29,493   removing build/bdist.linux-armv7l/wheel
2020-04-06T11:30:29,695   Building wheel for abacat (setup.py): finished with status 'done'
2020-04-06T11:30:29,813   Created wheel for abacat: filename=abacat-0.0.2a0-py3-none-any.whl size=9264636 sha256=2e3c21865ba04881ea52aa141bcc790148238150888de0b2d2f4162ba9c34acb
2020-04-06T11:30:29,813   Stored in directory: /tmp/pip-ephem-wheel-cache-xcgua8vb/wheels/f2/85/e9/68094102ef7b6fc157b92c8bc693e80577d0c7272a6c82d407
2020-04-06T11:30:29,816 Successfully built abacat
2020-04-06T11:30:32,355 Cleaning up...
2020-04-06T11:30:32,357   Removing source in /tmp/pip-wheel-vuz78t_h/abacat
2020-04-06T11:30:32,526 Removed build tracker: '/tmp/pip-req-tracker-rk8v211v'