2020-04-15T16:17:27,667 Created temporary directory: /tmp/pip-ephem-wheel-cache-d4p8vyuy 2020-04-15T16:17:27,672 Created temporary directory: /tmp/pip-req-tracker-xt5pknwt 2020-04-15T16:17:27,672 Initialized build tracking at /tmp/pip-req-tracker-xt5pknwt 2020-04-15T16:17:27,673 Created build tracker: /tmp/pip-req-tracker-xt5pknwt 2020-04-15T16:17:27,673 Entered build tracker: /tmp/pip-req-tracker-xt5pknwt 2020-04-15T16:17:27,675 Created temporary directory: /tmp/pip-wheel-767kd61w 2020-04-15T16:17:27,680 1 location(s) to search for versions of jcvi: 2020-04-15T16:17:27,680 * https://pypi.org/simple/jcvi/ 2020-04-15T16:17:27,680 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/ 2020-04-15T16:17:27,681 Getting page https://pypi.org/simple/jcvi/ 2020-04-15T16:17:27,684 Found index url https://pypi.org/simple 2020-04-15T16:17:27,687 Getting credentials from keyring for https://pypi.org/simple 2020-04-15T16:17:27,688 Getting credentials from keyring for pypi.org 2020-04-15T16:17:27,928 Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7 2020-04-15T16:17:27,929 Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8 2020-04-15T16:17:27,929 Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9 2020-04-15T16:17:27,930 Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10 2020-04-15T16:17:27,931 Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12 2020-04-15T16:17:27,931 Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1 2020-04-15T16:17:27,932 Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2 2020-04-15T16:17:27,932 Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3 2020-04-15T16:17:27,933 Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5 2020-04-15T16:17:27,933 Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6 2020-04-15T16:17:27,934 Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7 2020-04-15T16:17:27,935 Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8 2020-04-15T16:17:27,935 Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9 2020-04-15T16:17:27,936 Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1 2020-04-15T16:17:27,936 Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2 2020-04-15T16:17:27,937 Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6 2020-04-15T16:17:27,938 Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9 2020-04-15T16:17:27,938 Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1 2020-04-15T16:17:27,939 Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3 2020-04-15T16:17:27,939 Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4 2020-04-15T16:17:27,940 Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5 2020-04-15T16:17:27,940 Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6 2020-04-15T16:17:27,941 Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7 2020-04-15T16:17:27,941 Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4 2020-04-15T16:17:27,942 Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12 2020-04-15T16:17:27,943 Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6 2020-04-15T16:17:27,943 Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9 2020-04-15T16:17:27,944 Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10 2020-04-15T16:17:27,944 Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11 2020-04-15T16:17:27,945 Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12 2020-04-15T16:17:27,945 Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13 2020-04-15T16:17:27,946 Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14 2020-04-15T16:17:27,947 Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1 2020-04-15T16:17:27,947 Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2 2020-04-15T16:17:27,948 Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3 2020-04-15T16:17:27,949 Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4 2020-04-15T16:17:27,949 Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5 2020-04-15T16:17:27,950 Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6 2020-04-15T16:17:27,969 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2020-04-15T16:17:27,971 Using version 1.0.6 (newest of versions: 1.0.6) 2020-04-15T16:17:27,976 Collecting jcvi==1.0.6 2020-04-15T16:17:27,980 Created temporary directory: /tmp/pip-unpack-plfqzo3g 2020-04-15T16:17:27,983 Getting credentials from keyring for files.pythonhosted.org 2020-04-15T16:17:28,093 Downloading jcvi-1.0.6.tar.gz (822 kB) 2020-04-15T16:17:29,870 Added jcvi==1.0.6 from https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 to build tracker '/tmp/pip-req-tracker-xt5pknwt' 2020-04-15T16:17:29,873 Running setup.py (path:/tmp/pip-wheel-767kd61w/jcvi/setup.py) egg_info for package jcvi 2020-04-15T16:17:29,874 Running command python setup.py egg_info 2020-04-15T16:17:33,149 running egg_info 2020-04-15T16:17:33,153 creating /tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info 2020-04-15T16:17:33,155 writing /tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/PKG-INFO 2020-04-15T16:17:33,163 writing dependency_links to /tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/dependency_links.txt 2020-04-15T16:17:33,168 writing requirements to /tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/requires.txt 2020-04-15T16:17:33,170 writing top-level names to /tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/top_level.txt 2020-04-15T16:17:33,174 writing manifest file '/tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-04-15T16:17:33,218 reading manifest file '/tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-04-15T16:17:33,222 reading manifest template 'MANIFEST.in' 2020-04-15T16:17:33,245 writing manifest file '/tmp/pip-wheel-767kd61w/jcvi/pip-egg-info/jcvi.egg-info/SOURCES.txt' 2020-04-15T16:17:33,249 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing 'v1.0.6' to '1.0.6' 2020-04-15T16:17:33,249 warnings.warn(tmpl.format(**locals())) 2020-04-15T16:17:33,428 Source in /tmp/pip-wheel-767kd61w/jcvi has version 1.0.6, which satisfies requirement jcvi==1.0.6 from https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 2020-04-15T16:17:33,429 Removed jcvi==1.0.6 from https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 from build tracker '/tmp/pip-req-tracker-xt5pknwt' 2020-04-15T16:17:33,435 Building wheels for collected packages: jcvi 2020-04-15T16:17:33,445 Created temporary directory: /tmp/pip-wheel-2zpnudtr 2020-04-15T16:17:33,445 Building wheel for jcvi (setup.py): started 2020-04-15T16:17:33,446 Destination directory: /tmp/pip-wheel-2zpnudtr 2020-04-15T16:17:33,446 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-767kd61w/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-767kd61w/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2zpnudtr 2020-04-15T16:17:36,363 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing 'v1.0.6' to '1.0.6' 2020-04-15T16:17:36,364 warnings.warn(tmpl.format(**locals())) 2020-04-15T16:17:36,468 running bdist_wheel 2020-04-15T16:17:36,477 running build 2020-04-15T16:17:36,478 running build_py 2020-04-15T16:17:36,489 creating build 2020-04-15T16:17:36,490 creating build/lib.linux-armv7l-3.7 2020-04-15T16:17:36,491 creating build/lib.linux-armv7l-3.7/jcvi 2020-04-15T16:17:36,494 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2020-04-15T16:17:36,498 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2020-04-15T16:17:36,504 creating build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,506 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,513 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,520 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,527 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,536 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,544 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,551 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,559 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,563 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,575 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2020-04-15T16:17:36,587 creating build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,591 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,597 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,602 copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,608 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,614 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,623 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,628 copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,634 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,641 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,648 copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,654 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,663 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,670 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,678 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,684 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,692 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,699 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,710 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,714 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,726 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,730 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,735 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,741 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,748 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,754 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,759 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,762 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,767 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2020-04-15T16:17:36,775 creating build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,778 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,784 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,790 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,796 copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,802 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,809 copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,815 copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,821 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,831 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,839 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,845 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,857 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,872 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,881 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,888 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,895 copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,901 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,908 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,914 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,921 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,934 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,941 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,947 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,951 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,954 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,963 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,971 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,977 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,982 copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:36,991 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:36,994 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,001 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,006 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,011 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,016 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,023 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,029 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,037 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,044 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,048 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,058 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,062 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2020-04-15T16:17:37,070 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,075 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,081 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,087 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,093 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,100 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,107 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,114 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,121 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,128 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,134 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,138 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,144 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2020-04-15T16:17:37,150 creating build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,152 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,162 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,169 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,176 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,183 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,189 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,194 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,200 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,208 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,212 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2020-04-15T16:17:37,220 creating build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,222 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,229 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,236 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,242 copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,249 copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,255 copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,262 copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,268 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,277 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,283 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,290 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,297 copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,305 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,309 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,317 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,323 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,328 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2020-04-15T16:17:37,335 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,336 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,342 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,348 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,356 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,363 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,368 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,374 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,380 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,387 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,395 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,403 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,408 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,413 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,418 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,422 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,429 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,433 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,441 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,448 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,452 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,458 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,464 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2020-04-15T16:17:37,475 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,478 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,484 copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,490 copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,495 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,500 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,507 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,518 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,524 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,532 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,537 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,542 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,550 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,557 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,565 copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,572 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,579 copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,586 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,593 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,598 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,602 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,609 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,615 copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,620 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,627 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,635 copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,639 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,643 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,659 creating build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,661 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,667 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,679 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,685 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,690 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,724 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,731 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,738 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,746 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,753 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,761 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,768 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,772 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,778 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,786 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2020-04-15T16:17:37,795 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,798 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,802 running egg_info 2020-04-15T16:17:37,824 writing jcvi.egg-info/PKG-INFO 2020-04-15T16:17:37,830 writing dependency_links to jcvi.egg-info/dependency_links.txt 2020-04-15T16:17:37,834 writing requirements to jcvi.egg-info/requires.txt 2020-04-15T16:17:37,837 writing top-level names to jcvi.egg-info/top_level.txt 2020-04-15T16:17:37,877 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2020-04-15T16:17:37,889 reading manifest template 'MANIFEST.in' 2020-04-15T16:17:37,920 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2020-04-15T16:17:37,935 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:37,941 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:37,946 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,953 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,970 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,979 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,988 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:37,998 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,005 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,012 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,020 copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,037 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,044 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,055 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,062 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2020-04-15T16:17:38,098 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2020-04-15T16:17:38,101 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.6' 2020-04-15T16:17:38,102 running build_ext 2020-04-15T16:17:38,277 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2020-04-15T16:17:39,488 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-767kd61w/jcvi/jcvi/assembly/chic.pyx 2020-04-15T16:17:39,490 tree = Parsing.p_module(s, pxd, full_module_name) 2020-04-15T16:17:43,074 building 'jcvi.assembly.chic' extension 2020-04-15T16:17:43,076 creating build/temp.linux-armv7l-3.7 2020-04-15T16:17:43,077 creating build/temp.linux-armv7l-3.7/jcvi 2020-04-15T16:17:43,079 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2020-04-15T16:17:43,081 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2020-04-15T16:17:43,774 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-04-15T16:17:43,775 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-04-15T16:17:43,775 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-04-15T16:17:43,775 from jcvi/assembly/chic.c:613: 2020-04-15T16:17:43,776 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-04-15T16:17:43,776 #warning "Using deprecated NumPy API, disable it with " \ 2020-04-15T16:17:43,776 ^~~~~~~ 2020-04-15T16:17:51,795 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2020-04-15T16:17:52,049 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2020-04-15T16:17:53,374 building 'jcvi.formats.cblast' extension 2020-04-15T16:17:53,376 creating build/temp.linux-armv7l-3.7/jcvi/formats 2020-04-15T16:17:53,377 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2020-04-15T16:18:08,323 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2020-04-15T16:18:08,628 installing to build/bdist.linux-armv7l/wheel 2020-04-15T16:18:08,629 running install 2020-04-15T16:18:08,632 running install_lib 2020-04-15T16:18:08,642 creating build/bdist.linux-armv7l 2020-04-15T16:18:08,643 creating build/bdist.linux-armv7l/wheel 2020-04-15T16:18:08,647 creating build/bdist.linux-armv7l/wheel/jcvi 2020-04-15T16:18:08,649 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-04-15T16:18:08,655 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,657 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,664 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,670 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,677 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,686 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,695 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,701 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,708 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,713 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,724 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2020-04-15T16:18:08,738 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,746 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,754 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,759 copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,766 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,774 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,784 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,789 copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,796 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,804 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,811 copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,820 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,828 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,834 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,842 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,849 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,870 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,877 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,886 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,891 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,903 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,909 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,915 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,921 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,928 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,934 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,940 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,946 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,952 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2020-04-15T16:18:08,961 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,963 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,973 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,980 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,986 copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,993 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:08,999 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,007 copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,013 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,067 copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,074 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,092 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,101 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,107 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,119 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,137 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,147 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,154 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,161 copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,168 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,175 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,180 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,185 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,198 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,207 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,214 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,219 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,223 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,230 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,239 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,245 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,250 copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2020-04-15T16:18:09,257 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,259 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,265 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,271 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,276 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,283 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,290 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,297 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,303 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,309 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,313 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,322 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,328 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2020-04-15T16:18:09,338 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,340 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,347 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,353 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,360 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,365 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,370 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,376 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,384 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,391 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,397 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,402 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,408 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2020-04-15T16:18:09,416 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,419 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,430 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,437 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,444 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,449 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,454 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,457 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,462 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,472 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,477 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2020-04-15T16:18:09,485 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,487 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,494 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,499 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,505 copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,514 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,517 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,523 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,527 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,534 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,538 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,548 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,564 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,571 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,577 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,585 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,589 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,595 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,603 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,619 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2020-04-15T16:18:09,624 copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,631 copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,638 copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,645 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,653 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,657 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,663 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,670 copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,679 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,683 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,691 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,696 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,700 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2020-04-15T16:18:09,707 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,710 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,722 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,728 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,736 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,744 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,750 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,758 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,766 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,775 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,782 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,790 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,797 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,803 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,809 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,815 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,822 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,826 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,834 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,841 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,847 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,870 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,878 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2020-04-15T16:18:09,883 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2020-04-15T16:18:09,891 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,894 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,901 copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,908 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,936 copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,941 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,947 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,954 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,966 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,973 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,983 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,989 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:09,996 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,003 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,012 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,020 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,027 copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,034 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,042 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,049 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,064 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,071 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,075 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,083 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,090 copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,096 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,103 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,112 copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,118 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,123 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2020-04-15T16:18:10,138 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,140 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,147 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,159 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,168 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,173 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,182 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,189 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,197 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,205 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,211 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,219 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,226 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,231 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,236 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,245 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2020-04-15T16:18:10,252 running install_egg_info 2020-04-15T16:18:10,270 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.6-py3.7.egg-info 2020-04-15T16:18:10,305 running install_scripts 2020-04-15T16:18:10,443 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-04-15T16:18:10,456 creating build/bdist.linux-armv7l/wheel/jcvi-1.0.6.dist-info/WHEEL 2020-04-15T16:18:10,462 creating '/tmp/pip-wheel-2zpnudtr/jcvi-1.0.6-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-04-15T16:18:10,468 adding 'jcvi/__init__.py' 2020-04-15T16:18:10,470 adding 'jcvi/_version.py' 2020-04-15T16:18:10,474 adding 'jcvi/algorithms/__init__.py' 2020-04-15T16:18:10,476 adding 'jcvi/algorithms/__main__.py' 2020-04-15T16:18:10,479 adding 'jcvi/algorithms/ec.py' 2020-04-15T16:18:10,483 adding 'jcvi/algorithms/formula.py' 2020-04-15T16:18:10,487 adding 'jcvi/algorithms/graph.py' 2020-04-15T16:18:10,491 adding 'jcvi/algorithms/lis.py' 2020-04-15T16:18:10,496 adding 'jcvi/algorithms/lpsolve.py' 2020-04-15T16:18:10,499 adding 'jcvi/algorithms/matrix.py' 2020-04-15T16:18:10,502 adding 'jcvi/algorithms/maxsum.py' 2020-04-15T16:18:10,505 adding 'jcvi/algorithms/ml.py' 2020-04-15T16:18:10,508 adding 'jcvi/algorithms/supermap.py' 2020-04-15T16:18:10,511 adding 'jcvi/algorithms/tsp.py' 2020-04-15T16:18:10,515 adding 'jcvi/annotation/__init__.py' 2020-04-15T16:18:10,518 adding 'jcvi/annotation/__main__.py' 2020-04-15T16:18:10,523 adding 'jcvi/annotation/ahrd.py' 2020-04-15T16:18:10,526 adding 'jcvi/annotation/automaton.py' 2020-04-15T16:18:10,530 adding 'jcvi/annotation/depth.py' 2020-04-15T16:18:10,533 adding 'jcvi/annotation/evm.py' 2020-04-15T16:18:10,538 adding 'jcvi/annotation/maker.py' 2020-04-15T16:18:10,543 adding 'jcvi/annotation/pasa.py' 2020-04-15T16:18:10,547 adding 'jcvi/annotation/qc.py' 2020-04-15T16:18:10,557 adding 'jcvi/annotation/reformat.py' 2020-04-15T16:18:10,561 adding 'jcvi/annotation/stats.py' 2020-04-15T16:18:10,564 adding 'jcvi/annotation/train.py' 2020-04-15T16:18:10,569 adding 'jcvi/apps/__init__.py' 2020-04-15T16:18:10,571 adding 'jcvi/apps/__main__.py' 2020-04-15T16:18:10,576 adding 'jcvi/apps/align.py' 2020-04-15T16:18:10,590 adding 'jcvi/apps/base.py' 2020-04-15T16:18:10,595 adding 'jcvi/apps/biomart.py' 2020-04-15T16:18:10,598 adding 'jcvi/apps/blastplus.py' 2020-04-15T16:18:10,601 adding 'jcvi/apps/bowtie.py' 2020-04-15T16:18:10,604 adding 'jcvi/apps/bwa.py' 2020-04-15T16:18:10,608 adding 'jcvi/apps/cap3.py' 2020-04-15T16:18:10,611 adding 'jcvi/apps/cdhit.py' 2020-04-15T16:18:10,614 adding 'jcvi/apps/console.py' 2020-04-15T16:18:10,617 adding 'jcvi/apps/emboss.py' 2020-04-15T16:18:10,623 adding 'jcvi/apps/fetch.py' 2020-04-15T16:18:10,628 adding 'jcvi/apps/gbsubmit.py' 2020-04-15T16:18:10,632 adding 'jcvi/apps/gmap.py' 2020-04-15T16:18:10,636 adding 'jcvi/apps/grid.py' 2020-04-15T16:18:10,645 adding 'jcvi/apps/ks.py' 2020-04-15T16:18:10,648 adding 'jcvi/apps/lastz.py' 2020-04-15T16:18:10,651 adding 'jcvi/apps/mask.py' 2020-04-15T16:18:10,660 adding 'jcvi/apps/phylo.py' 2020-04-15T16:18:10,663 adding 'jcvi/apps/r.py' 2020-04-15T16:18:10,666 adding 'jcvi/apps/restriction.py' 2020-04-15T16:18:10,669 adding 'jcvi/apps/script.py' 2020-04-15T16:18:10,671 adding 'jcvi/apps/softlink.py' 2020-04-15T16:18:10,674 adding 'jcvi/apps/tesseract.py' 2020-04-15T16:18:10,682 adding 'jcvi/apps/uclust.py' 2020-04-15T16:18:10,686 adding 'jcvi/apps/uniprot.py' 2020-04-15T16:18:10,689 adding 'jcvi/apps/vecscreen.py' 2020-04-15T16:18:10,694 adding 'jcvi/assembly/__init__.py' 2020-04-15T16:18:10,696 adding 'jcvi/assembly/__main__.py' 2020-04-15T16:18:10,711 adding 'jcvi/assembly/allmaps.py' 2020-04-15T16:18:10,717 adding 'jcvi/assembly/allpaths.py' 2020-04-15T16:18:10,721 adding 'jcvi/assembly/amos.py' 2020-04-15T16:18:10,725 adding 'jcvi/assembly/automaton.py' 2020-04-15T16:18:10,728 adding 'jcvi/assembly/bambus.py' 2020-04-15T16:18:10,731 adding 'jcvi/assembly/base.py' 2020-04-15T16:18:10,740 adding 'jcvi/assembly/ca.py' 2020-04-15T16:18:10,822 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2020-04-15T16:18:10,827 adding 'jcvi/assembly/chic.pyx' 2020-04-15T16:18:10,831 adding 'jcvi/assembly/coverage.py' 2020-04-15T16:18:10,834 adding 'jcvi/assembly/gaps.py' 2020-04-15T16:18:10,839 adding 'jcvi/assembly/geneticmap.py' 2020-04-15T16:18:10,848 adding 'jcvi/assembly/goldenpath.py' 2020-04-15T16:18:10,862 adding 'jcvi/assembly/hic.py' 2020-04-15T16:18:10,869 adding 'jcvi/assembly/kmer.py' 2020-04-15T16:18:10,872 adding 'jcvi/assembly/meraculous.py' 2020-04-15T16:18:10,876 adding 'jcvi/assembly/opticalmap.py' 2020-04-15T16:18:10,884 adding 'jcvi/assembly/patch.py' 2020-04-15T16:18:10,887 adding 'jcvi/assembly/pbjelly.py' 2020-04-15T16:18:10,892 adding 'jcvi/assembly/postprocess.py' 2020-04-15T16:18:10,898 adding 'jcvi/assembly/preprocess.py' 2020-04-15T16:18:10,901 adding 'jcvi/assembly/sim.py' 2020-04-15T16:18:10,905 adding 'jcvi/assembly/soap.py' 2020-04-15T16:18:10,909 adding 'jcvi/assembly/sspace.py' 2020-04-15T16:18:10,914 adding 'jcvi/assembly/syntenypath.py' 2020-04-15T16:18:10,917 adding 'jcvi/assembly/trinity.py' 2020-04-15T16:18:10,921 adding 'jcvi/assembly/unitig.py' 2020-04-15T16:18:10,925 adding 'jcvi/compara/__init__.py' 2020-04-15T16:18:10,927 adding 'jcvi/compara/__main__.py' 2020-04-15T16:18:10,931 adding 'jcvi/compara/blastfilter.py' 2020-04-15T16:18:10,937 adding 'jcvi/compara/catalog.py' 2020-04-15T16:18:10,944 adding 'jcvi/compara/fractionation.py' 2020-04-15T16:18:10,948 adding 'jcvi/compara/pad.py' 2020-04-15T16:18:10,952 adding 'jcvi/compara/quota.py' 2020-04-15T16:18:10,956 adding 'jcvi/compara/reconstruct.py' 2020-04-15T16:18:10,959 adding 'jcvi/compara/synfind.py' 2020-04-15T16:18:10,973 adding 'jcvi/compara/synteny.py' 2020-04-15T16:18:10,978 adding 'jcvi/formats/__init__.py' 2020-04-15T16:18:10,981 adding 'jcvi/formats/__main__.py' 2020-04-15T16:18:10,984 adding 'jcvi/formats/ace.py' 2020-04-15T16:18:10,996 adding 'jcvi/formats/agp.py' 2020-04-15T16:18:11,005 adding 'jcvi/formats/base.py' 2020-04-15T16:18:11,021 adding 'jcvi/formats/bed.py' 2020-04-15T16:18:11,031 adding 'jcvi/formats/blast.py' 2020-04-15T16:18:11,034 adding 'jcvi/formats/btab.py' 2020-04-15T16:18:11,208 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2020-04-15T16:18:11,217 adding 'jcvi/formats/cblast.pyx' 2020-04-15T16:18:11,221 adding 'jcvi/formats/cdt.py' 2020-04-15T16:18:11,225 adding 'jcvi/formats/chain.py' 2020-04-15T16:18:11,228 adding 'jcvi/formats/contig.py' 2020-04-15T16:18:11,232 adding 'jcvi/formats/coords.py' 2020-04-15T16:18:11,235 adding 'jcvi/formats/excel.py' 2020-04-15T16:18:11,252 adding 'jcvi/formats/fasta.py' 2020-04-15T16:18:11,260 adding 'jcvi/formats/fastq.py' 2020-04-15T16:18:11,263 adding 'jcvi/formats/fpc.py' 2020-04-15T16:18:11,267 adding 'jcvi/formats/genbank.py' 2020-04-15T16:18:11,291 adding 'jcvi/formats/gff.py' 2020-04-15T16:18:11,295 adding 'jcvi/formats/html.py' 2020-04-15T16:18:11,298 adding 'jcvi/formats/maf.py' 2020-04-15T16:18:11,302 adding 'jcvi/formats/obo.py' 2020-04-15T16:18:11,304 adding 'jcvi/formats/pdf.py' 2020-04-15T16:18:11,308 adding 'jcvi/formats/posmap.py' 2020-04-15T16:18:11,312 adding 'jcvi/formats/psl.py' 2020-04-15T16:18:11,314 adding 'jcvi/formats/pyblast.py' 2020-04-15T16:18:11,321 adding 'jcvi/formats/sam.py' 2020-04-15T16:18:11,325 adding 'jcvi/formats/sbt.py' 2020-04-15T16:18:11,328 adding 'jcvi/formats/sizes.py' 2020-04-15T16:18:11,334 adding 'jcvi/formats/vcf.py' 2020-04-15T16:18:11,339 adding 'jcvi/graphics/__init__.py' 2020-04-15T16:18:11,341 adding 'jcvi/graphics/__main__.py' 2020-04-15T16:18:11,346 adding 'jcvi/graphics/align.py' 2020-04-15T16:18:11,351 adding 'jcvi/graphics/assembly.py' 2020-04-15T16:18:11,356 adding 'jcvi/graphics/base.py' 2020-04-15T16:18:11,360 adding 'jcvi/graphics/blastplot.py' 2020-04-15T16:18:11,365 adding 'jcvi/graphics/chromosome.py' 2020-04-15T16:18:11,369 adding 'jcvi/graphics/coverage.py' 2020-04-15T16:18:11,373 adding 'jcvi/graphics/dotplot.py' 2020-04-15T16:18:11,378 adding 'jcvi/graphics/glyph.py' 2020-04-15T16:18:11,384 adding 'jcvi/graphics/grabseeds.py' 2020-04-15T16:18:11,387 adding 'jcvi/graphics/graph.py' 2020-04-15T16:18:11,390 adding 'jcvi/graphics/heatmap.py' 2020-04-15T16:18:11,394 adding 'jcvi/graphics/histogram.py' 2020-04-15T16:18:11,398 adding 'jcvi/graphics/karyotype.py' 2020-04-15T16:18:11,405 adding 'jcvi/graphics/landscape.py' 2020-04-15T16:18:11,407 adding 'jcvi/graphics/logo.py' 2020-04-15T16:18:11,410 adding 'jcvi/graphics/mummerplot.py' 2020-04-15T16:18:11,415 adding 'jcvi/graphics/synteny.py' 2020-04-15T16:18:11,420 adding 'jcvi/graphics/tree.py' 2020-04-15T16:18:11,423 adding 'jcvi/graphics/wheel.py' 2020-04-15T16:18:11,426 adding 'jcvi/graphics/whisker.py' 2020-04-15T16:18:11,430 adding 'jcvi/projects/__init__.py' 2020-04-15T16:18:11,432 adding 'jcvi/projects/__main__.py' 2020-04-15T16:18:11,438 adding 'jcvi/projects/age.py' 2020-04-15T16:18:11,441 adding 'jcvi/projects/alfalfa.py' 2020-04-15T16:18:11,445 adding 'jcvi/projects/allmaps.py' 2020-04-15T16:18:11,449 adding 'jcvi/projects/bites.py' 2020-04-15T16:18:11,452 adding 'jcvi/projects/heterosis.py' 2020-04-15T16:18:11,456 adding 'jcvi/projects/ies.py' 2020-04-15T16:18:11,461 adding 'jcvi/projects/misc.py' 2020-04-15T16:18:11,468 adding 'jcvi/projects/napus.py' 2020-04-15T16:18:11,472 adding 'jcvi/projects/pineapple.py' 2020-04-15T16:18:11,475 adding 'jcvi/projects/pistachio.py' 2020-04-15T16:18:11,488 adding 'jcvi/projects/str.py' 2020-04-15T16:18:11,495 adding 'jcvi/projects/synfind.py' 2020-04-15T16:18:11,501 adding 'jcvi/projects/tgbs.py' 2020-04-15T16:18:11,505 adding 'jcvi/utils/__init__.py' 2020-04-15T16:18:11,507 adding 'jcvi/utils/__main__.py' 2020-04-15T16:18:11,513 adding 'jcvi/utils/aws.py' 2020-04-15T16:18:11,517 adding 'jcvi/utils/brewer2mpl.py' 2020-04-15T16:18:11,521 adding 'jcvi/utils/cbook.py' 2020-04-15T16:18:11,524 adding 'jcvi/utils/counter.py' 2020-04-15T16:18:11,528 adding 'jcvi/utils/db.py' 2020-04-15T16:18:11,532 adding 'jcvi/utils/ez_setup.py' 2020-04-15T16:18:11,535 adding 'jcvi/utils/grouper.py' 2020-04-15T16:18:11,539 adding 'jcvi/utils/iter.py' 2020-04-15T16:18:11,542 adding 'jcvi/utils/natsort.py' 2020-04-15T16:18:11,546 adding 'jcvi/utils/orderedcollections.py' 2020-04-15T16:18:11,552 adding 'jcvi/utils/progressbar.py' 2020-04-15T16:18:11,556 adding 'jcvi/utils/range.py' 2020-04-15T16:18:11,559 adding 'jcvi/utils/table.py' 2020-04-15T16:18:11,562 adding 'jcvi/utils/taxonomy.py' 2020-04-15T16:18:11,568 adding 'jcvi/utils/webcolors.py' 2020-04-15T16:18:11,581 adding 'jcvi/utils/data/Airswing.ttf' 2020-04-15T16:18:11,608 adding 'jcvi/utils/data/Collegia.ttf' 2020-04-15T16:18:11,615 adding 'jcvi/utils/data/HookedUp.ttf' 2020-04-15T16:18:11,624 adding 'jcvi/utils/data/Humor-Sans.ttf' 2020-04-15T16:18:11,631 adding 'jcvi/utils/data/TREDs.meta.csv' 2020-04-15T16:18:11,634 adding 'jcvi/utils/data/__init__.py' 2020-04-15T16:18:11,636 adding 'jcvi/utils/data/adapters.fasta' 2020-04-15T16:18:11,639 adding 'jcvi/utils/data/blosum80.mat' 2020-04-15T16:18:11,643 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2020-04-15T16:18:11,652 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2020-04-15T16:18:11,656 adding 'jcvi/utils/data/colorchecker.txt' 2020-04-15T16:18:11,666 adding 'jcvi/utils/data/hg38.band.txt' 2020-04-15T16:18:11,671 adding 'jcvi/utils/data/hg38.chrom.sizes' 2020-04-15T16:18:11,673 adding 'jcvi/utils/data/instance.json' 2020-04-15T16:18:11,677 adding 'jcvi/variation/__init__.py' 2020-04-15T16:18:11,679 adding 'jcvi/variation/__main__.py' 2020-04-15T16:18:11,688 adding 'jcvi/variation/cnv.py' 2020-04-15T16:18:11,692 adding 'jcvi/variation/deconvolute.py' 2020-04-15T16:18:11,695 adding 'jcvi/variation/delly.py' 2020-04-15T16:18:11,699 adding 'jcvi/variation/impute.py' 2020-04-15T16:18:11,702 adding 'jcvi/variation/phase.py' 2020-04-15T16:18:11,706 adding 'jcvi/variation/snp.py' 2020-04-15T16:18:11,717 adding 'jcvi/variation/str.py' 2020-04-15T16:18:11,720 adding 'jcvi/variation/tassel.py' 2020-04-15T16:18:11,724 adding 'jcvi-1.0.6.dist-info/LICENSE' 2020-04-15T16:18:11,727 adding 'jcvi-1.0.6.dist-info/METADATA' 2020-04-15T16:18:11,730 adding 'jcvi-1.0.6.dist-info/WHEEL' 2020-04-15T16:18:11,731 adding 'jcvi-1.0.6.dist-info/top_level.txt' 2020-04-15T16:18:11,736 adding 'jcvi-1.0.6.dist-info/RECORD' 2020-04-15T16:18:11,847 removing build/bdist.linux-armv7l/wheel 2020-04-15T16:18:12,467 Building wheel for jcvi (setup.py): finished with status 'done' 2020-04-15T16:18:12,490 Created wheel for jcvi: filename=jcvi-1.0.6-cp37-cp37m-linux_armv7l.whl size=1198270 sha256=77e02f21045d078ae0538d233e8f065b66260741f82e26c40a936c704b58a3f8 2020-04-15T16:18:12,491 Stored in directory: /tmp/pip-ephem-wheel-cache-d4p8vyuy/wheels/1b/2d/fc/78852ae8038c795da59b77ef878b6aeda4a70841785bae4379 2020-04-15T16:18:12,495 Successfully built jcvi 2020-04-15T16:18:12,710 Cleaning up... 2020-04-15T16:18:12,712 Removing source in /tmp/pip-wheel-767kd61w/jcvi 2020-04-15T16:18:13,070 Removed build tracker: '/tmp/pip-req-tracker-xt5pknwt'