2020-04-21T15:09:25,756 Created temporary directory: /tmp/pip-ephem-wheel-cache-bfz4gmd0
2020-04-21T15:09:25,760 Created temporary directory: /tmp/pip-req-tracker-crl50p3j
2020-04-21T15:09:25,761 Initialized build tracking at /tmp/pip-req-tracker-crl50p3j
2020-04-21T15:09:25,763 Created build tracker: /tmp/pip-req-tracker-crl50p3j
2020-04-21T15:09:25,763 Entered build tracker: /tmp/pip-req-tracker-crl50p3j
2020-04-21T15:09:25,764 Created temporary directory: /tmp/pip-wheel-wi8svc23
2020-04-21T15:09:25,770 1 location(s) to search for versions of GenomeTreeTk:
2020-04-21T15:09:25,770 * https://pypi.org/simple/genometreetk/
2020-04-21T15:09:25,771 Fetching project page and analyzing links: https://pypi.org/simple/genometreetk/
2020-04-21T15:09:25,773 Getting page https://pypi.org/simple/genometreetk/
2020-04-21T15:09:25,776 Found index url https://pypi.org/simple
2020-04-21T15:09:26,009   Found link https://files.pythonhosted.org/packages/5e/b0/ebf937461322f1c319bebf47d609459104c5f1961eb95ad3c2cc953ded47/GenomeTreeTk-0.0.4.tar.gz#sha256=56d61904b388982e763720e03f3ff3a251016febde5aabf9e72faf4522f31f4f (from https://pypi.org/simple/genometreetk/), version: 0.0.4
2020-04-21T15:09:26,010   Found link https://files.pythonhosted.org/packages/cf/87/638d4e64c4f511abd4336b88ca4ff4b426777147a338a70b5867807a5278/GenomeTreeTk-0.0.18.tar.gz#sha256=8ad76555c1572344cf32a041073e1dc9b410b41028ee4220b7759763c16209bc (from https://pypi.org/simple/genometreetk/), version: 0.0.18
2020-04-21T15:09:26,011   Found link https://files.pythonhosted.org/packages/87/2c/f5c06ec3ef8184f44a9e1a36fe10c0bc1c280b97c0c264586441a3521ca8/GenomeTreeTk-0.0.21.tar.gz#sha256=bbd011e72971e1281a9f3b5dde6f17590ba7963bbd64c306a2ec2d0f77c26479 (from https://pypi.org/simple/genometreetk/), version: 0.0.21
2020-04-21T15:09:26,012   Found link https://files.pythonhosted.org/packages/29/96/33971faf54258e25d6ecf64eb8f28cd08a9adb1c3fbb478dd01e06ac2f83/GenomeTreeTk-0.0.31.tar.gz#sha256=0d647769b1aa5b9af828e4eea3e85d824485e9da20b0b66117256c24228ed531 (from https://pypi.org/simple/genometreetk/), version: 0.0.31
2020-04-21T15:09:26,013   Found link https://files.pythonhosted.org/packages/17/1a/5e1043083d53d846a32684d8d932ef849ad400f5a673f59ee60dd39ce250/GenomeTreeTk-0.0.32.tar.gz#sha256=0cc394174dc13ccadbf98c345add23698a9726dccbdc18519695c93b568958c2 (from https://pypi.org/simple/genometreetk/), version: 0.0.32
2020-04-21T15:09:26,013   Found link https://files.pythonhosted.org/packages/4b/cc/7bd02ea62b4ec9f4cbfc19212734eadd2973e17833fd4d144c0122691fa8/GenomeTreeTk-0.0.36.tar.gz#sha256=f71569612765c4be50962915bd41d0407fa425a3a14fcba04303995b91d1d3ad (from https://pypi.org/simple/genometreetk/), version: 0.0.36
2020-04-21T15:09:26,014   Found link https://files.pythonhosted.org/packages/01/44/6a37ff701b59a0b1ca7100574aa4337ed28aa94d434f311c592ae2c3812d/GenomeTreeTk-0.0.37.tar.gz#sha256=645e3f92373d2bd05bd430cfca84874a731820ca0f1da26b190db791e153028c (from https://pypi.org/simple/genometreetk/), version: 0.0.37
2020-04-21T15:09:26,015   Found link https://files.pythonhosted.org/packages/0a/e5/da880d6c1079f36afc8c13e9279a2561050a6e6497750a81df01f226d822/GenomeTreeTk-0.0.54.tar.gz#sha256=2947db56a1b8e9fd9e8d7f1f73fa75d1af67ee44ff8a058a18c70dc544d36b6b (from https://pypi.org/simple/genometreetk/), version: 0.0.54
2020-04-21T15:09:26,015   Found link https://files.pythonhosted.org/packages/26/49/6781e0b62a0b54023859343e60d2f91ecc0991be0d4fa0684fdd3c8dd662/GenomeTreeTk-0.0.55.tar.gz#sha256=2dd8779194c73db5f54d29d97be36a3754f382a7398f9fc55e49aa43e4991545 (from https://pypi.org/simple/genometreetk/), version: 0.0.55
2020-04-21T15:09:26,016   Found link https://files.pythonhosted.org/packages/19/81/1f0cfeac4c049d74e6086de5a46fb4175cdaf45d979f0b511e2f781a254c/GenomeTreeTk-0.1.0.tar.gz#sha256=6e5ca8a5fa38081f818ba28d81715878a962a690b20a3096afd64d11387c6714 (from https://pypi.org/simple/genometreetk/), version: 0.1.0
2020-04-21T15:09:26,017   Found link https://files.pythonhosted.org/packages/03/3a/93d1c53cb10ce3a8b6a8507bf6448001153b76ee3c22fdf1c0e59271527a/GenomeTreeTk-0.1.1.tar.gz#sha256=d162c636b59a597d3861829fe8f1faaf0607d94b8358b0306e3a4b085c3b4965 (from https://pypi.org/simple/genometreetk/), version: 0.1.1
2020-04-21T15:09:26,017   Found link https://files.pythonhosted.org/packages/87/e3/33d2a55999287465ed93132f87465bb1c0c4d7d670fdbbf52181b91a0c43/GenomeTreeTk-0.1.2.tar.gz#sha256=e88346f9d2c1d907b15a45f6213df22bef97cc184dd6522604e216299487c337 (from https://pypi.org/simple/genometreetk/), version: 0.1.2
2020-04-21T15:09:26,018   Found link https://files.pythonhosted.org/packages/b9/2d/8d539860019764dd3cf50bd6be25ae6da8fdf846fe04017c9aa7e9fc747d/GenomeTreeTk-0.1.5.tar.gz#sha256=cecc290979478c755e9cce1629e27831891aa4596da07f80a2982982330c46a4 (from https://pypi.org/simple/genometreetk/), version: 0.1.5
2020-04-21T15:09:26,019   Found link https://files.pythonhosted.org/packages/97/68/8bf2da360e7b7d7600bbfe2c37334e8326c6b228080eaf2f5b9e822b4885/GenomeTreeTk-0.1.6.tar.gz#sha256=db69f8989adf93d61a2209be8812a1b35a4ed4e582b3ef2a9709966c3267366a (from https://pypi.org/simple/genometreetk/), version: 0.1.6
2020-04-21T15:09:26,032 Given no hashes to check 1 links for project 'GenomeTreeTk': discarding no candidates
2020-04-21T15:09:26,034 Using version 0.1.6 (newest of versions: 0.1.6)
2020-04-21T15:09:26,039 Collecting GenomeTreeTk==0.1.6
2020-04-21T15:09:26,044   Created temporary directory: /tmp/pip-unpack-9syg1mn5
2020-04-21T15:09:27,646   Downloading GenomeTreeTk-0.1.6.tar.gz (948 kB)
2020-04-21T15:09:28,454   Added GenomeTreeTk==0.1.6 from https://files.pythonhosted.org/packages/97/68/8bf2da360e7b7d7600bbfe2c37334e8326c6b228080eaf2f5b9e822b4885/GenomeTreeTk-0.1.6.tar.gz#sha256=db69f8989adf93d61a2209be8812a1b35a4ed4e582b3ef2a9709966c3267366a to build tracker '/tmp/pip-req-tracker-crl50p3j'
2020-04-21T15:09:28,455     Running setup.py (path:/tmp/pip-wheel-wi8svc23/GenomeTreeTk/setup.py) egg_info for package GenomeTreeTk
2020-04-21T15:09:28,456     Running command python setup.py egg_info
2020-04-21T15:09:30,241     running egg_info
2020-04-21T15:09:30,245     creating /tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info
2020-04-21T15:09:30,247     writing top-level names to /tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/top_level.txt
2020-04-21T15:09:30,250     writing requirements to /tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/requires.txt
2020-04-21T15:09:30,251     writing /tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/PKG-INFO
2020-04-21T15:09:30,255     writing dependency_links to /tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/dependency_links.txt
2020-04-21T15:09:30,259     writing manifest file '/tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:30,577     reading manifest file '/tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:30,585     writing manifest file '/tmp/pip-wheel-wi8svc23/GenomeTreeTk/pip-egg-info/GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:30,713   Source in /tmp/pip-wheel-wi8svc23/GenomeTreeTk has version 0.1.6, which satisfies requirement GenomeTreeTk==0.1.6 from https://files.pythonhosted.org/packages/97/68/8bf2da360e7b7d7600bbfe2c37334e8326c6b228080eaf2f5b9e822b4885/GenomeTreeTk-0.1.6.tar.gz#sha256=db69f8989adf93d61a2209be8812a1b35a4ed4e582b3ef2a9709966c3267366a
2020-04-21T15:09:30,714   Removed GenomeTreeTk==0.1.6 from https://files.pythonhosted.org/packages/97/68/8bf2da360e7b7d7600bbfe2c37334e8326c6b228080eaf2f5b9e822b4885/GenomeTreeTk-0.1.6.tar.gz#sha256=db69f8989adf93d61a2209be8812a1b35a4ed4e582b3ef2a9709966c3267366a from build tracker '/tmp/pip-req-tracker-crl50p3j'
2020-04-21T15:09:30,717 Building wheels for collected packages: GenomeTreeTk
2020-04-21T15:09:30,724   Created temporary directory: /tmp/pip-wheel-9j2gvvol
2020-04-21T15:09:30,725   Building wheel for GenomeTreeTk (setup.py): started
2020-04-21T15:09:30,726   Destination directory: /tmp/pip-wheel-9j2gvvol
2020-04-21T15:09:30,726   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-wi8svc23/GenomeTreeTk/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-wi8svc23/GenomeTreeTk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9j2gvvol
2020-04-21T15:09:32,537   running bdist_wheel
2020-04-21T15:09:32,550   running build
2020-04-21T15:09:32,550   running build_py
2020-04-21T15:09:32,845   creating build
2020-04-21T15:09:32,846   creating build/lib
2020-04-21T15:09:32,867   creating build/lib/genometreetk
2020-04-21T15:09:32,870   copying genometreetk/derep_tree.py -> build/lib/genometreetk
2020-04-21T15:09:32,876   copying genometreetk/arb.py -> build/lib/genometreetk
2020-04-21T15:09:32,881   copying genometreetk/tree_support.py -> build/lib/genometreetk
2020-04-21T15:09:32,886   copying genometreetk/aai.py -> build/lib/genometreetk
2020-04-21T15:09:32,890   copying genometreetk/main.py -> build/lib/genometreetk
2020-04-21T15:09:32,894   copying genometreetk/bootstrap.py -> build/lib/genometreetk
2020-04-21T15:09:32,898   copying genometreetk/jackknife_taxa.py -> build/lib/genometreetk
2020-04-21T15:09:32,901   copying genometreetk/exceptions.py -> build/lib/genometreetk
2020-04-21T15:09:32,904   copying genometreetk/default_values.py -> build/lib/genometreetk
2020-04-21T15:09:32,907   copying genometreetk/prune.py -> build/lib/genometreetk
2020-04-21T15:09:32,911   copying genometreetk/__init__.py -> build/lib/genometreetk
2020-04-21T15:09:32,914   copying genometreetk/rna_workflow.py -> build/lib/genometreetk
2020-04-21T15:09:32,919   copying genometreetk/jackknife_markers.py -> build/lib/genometreetk
2020-04-21T15:09:32,922   copying genometreetk/reroot_tree.py -> build/lib/genometreetk
2020-04-21T15:09:32,926   copying genometreetk/infer_workflow.py -> build/lib/genometreetk
2020-04-21T15:09:32,929   copying genometreetk/common.py -> build/lib/genometreetk
2020-04-21T15:09:32,934   copying genometreetk/phylogenetic_diversity.py -> build/lib/genometreetk
2020-04-21T15:09:32,938   copying genometreetk/combine_support.py -> build/lib/genometreetk
2020-04-21T15:09:32,941   copying genometreetk/ncbi.py -> build/lib/genometreetk
2020-04-21T15:09:32,945   creating build/lib/genometreetk/markers
2020-04-21T15:09:32,947   copying genometreetk/markers/lgt_test.py -> build/lib/genometreetk/markers
2020-04-21T15:09:32,951   copying genometreetk/markers/infer_markers.py -> build/lib/genometreetk/markers
2020-04-21T15:09:32,955   copying genometreetk/markers/__init__.py -> build/lib/genometreetk/markers
2020-04-21T15:09:32,958   copying genometreetk/markers/align_markers.py -> build/lib/genometreetk/markers
2020-04-21T15:09:32,964   copying genometreetk/VERSION -> build/lib/genometreetk
2020-04-21T15:09:32,967   creating build/lib/genometreetk/cm_files
2020-04-21T15:09:32,969   copying genometreetk/cm_files/lsu_bacteria.cm -> build/lib/genometreetk/cm_files
2020-04-21T15:09:33,055   copying genometreetk/cm_files/lsu_eukaryote.cm -> build/lib/genometreetk/cm_files
2020-04-21T15:09:33,154   copying genometreetk/cm_files/README -> build/lib/genometreetk/cm_files
2020-04-21T15:09:33,157   copying genometreetk/cm_files/lsu_archaea.cm -> build/lib/genometreetk/cm_files
2020-04-21T15:09:33,250   running build_scripts
2020-04-21T15:09:33,251   creating build/scripts-3.5
2020-04-21T15:09:33,254   copying and adjusting bin/genometreetk -> build/scripts-3.5
2020-04-21T15:09:33,258   changing mode of build/scripts-3.5/genometreetk from 644 to 755
2020-04-21T15:09:33,264   installing to build/bdist.linux-armv7l/wheel
2020-04-21T15:09:33,265   running install
2020-04-21T15:09:33,266   running install_lib
2020-04-21T15:09:33,273   creating build/bdist.linux-armv7l
2020-04-21T15:09:33,274   creating build/bdist.linux-armv7l/wheel
2020-04-21T15:09:33,277   creating build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,278   copying build/lib/genometreetk/VERSION -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,282   copying build/lib/genometreetk/derep_tree.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,286   copying build/lib/genometreetk/arb.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,290   copying build/lib/genometreetk/tree_support.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,295   copying build/lib/genometreetk/aai.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,301   copying build/lib/genometreetk/main.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,307   copying build/lib/genometreetk/bootstrap.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,313   creating build/bdist.linux-armv7l/wheel/genometreetk/markers
2020-04-21T15:09:33,314   copying build/lib/genometreetk/markers/lgt_test.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
2020-04-21T15:09:33,318   copying build/lib/genometreetk/markers/infer_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
2020-04-21T15:09:33,323   copying build/lib/genometreetk/markers/__init__.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
2020-04-21T15:09:33,325   copying build/lib/genometreetk/markers/align_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk/markers
2020-04-21T15:09:33,329   copying build/lib/genometreetk/jackknife_taxa.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,334   copying build/lib/genometreetk/exceptions.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,339   copying build/lib/genometreetk/default_values.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,344   copying build/lib/genometreetk/prune.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,349   copying build/lib/genometreetk/__init__.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,353   copying build/lib/genometreetk/rna_workflow.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,358   copying build/lib/genometreetk/jackknife_markers.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,363   creating build/bdist.linux-armv7l/wheel/genometreetk/cm_files
2020-04-21T15:09:33,364   copying build/lib/genometreetk/cm_files/lsu_bacteria.cm -> build/bdist.linux-armv7l/wheel/genometreetk/cm_files
2020-04-21T15:09:33,453   copying build/lib/genometreetk/cm_files/lsu_eukaryote.cm -> build/bdist.linux-armv7l/wheel/genometreetk/cm_files
2020-04-21T15:09:33,552   copying build/lib/genometreetk/cm_files/README -> build/bdist.linux-armv7l/wheel/genometreetk/cm_files
2020-04-21T15:09:33,557   copying build/lib/genometreetk/cm_files/lsu_archaea.cm -> build/bdist.linux-armv7l/wheel/genometreetk/cm_files
2020-04-21T15:09:33,657   copying build/lib/genometreetk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,661   copying build/lib/genometreetk/infer_workflow.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,665   copying build/lib/genometreetk/common.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,671   copying build/lib/genometreetk/phylogenetic_diversity.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,675   copying build/lib/genometreetk/combine_support.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,679   copying build/lib/genometreetk/ncbi.py -> build/bdist.linux-armv7l/wheel/genometreetk
2020-04-21T15:09:33,681   running install_egg_info
2020-04-21T15:09:33,719   running egg_info
2020-04-21T15:09:33,720   creating GenomeTreeTk.egg-info
2020-04-21T15:09:33,722   writing GenomeTreeTk.egg-info/PKG-INFO
2020-04-21T15:09:33,725   writing requirements to GenomeTreeTk.egg-info/requires.txt
2020-04-21T15:09:33,728   writing top-level names to GenomeTreeTk.egg-info/top_level.txt
2020-04-21T15:09:33,729   writing dependency_links to GenomeTreeTk.egg-info/dependency_links.txt
2020-04-21T15:09:33,733   writing manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:33,741   reading manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:33,749   writing manifest file 'GenomeTreeTk.egg-info/SOURCES.txt'
2020-04-21T15:09:33,752   Copying GenomeTreeTk.egg-info to build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6-py3.5.egg-info
2020-04-21T15:09:33,771   running install_scripts
2020-04-21T15:09:33,880   creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6.data
2020-04-21T15:09:33,881   creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6.data/scripts
2020-04-21T15:09:33,883   copying build/scripts-3.5/genometreetk -> build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6.data/scripts
2020-04-21T15:09:33,887   changing mode of build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6.data/scripts/genometreetk to 755
2020-04-21T15:09:33,926   creating build/bdist.linux-armv7l/wheel/GenomeTreeTk-0.1.6.dist-info/WHEEL
2020-04-21T15:09:35,478   Building wheel for GenomeTreeTk (setup.py): finished with status 'done'
2020-04-21T15:09:35,495   Created wheel for GenomeTreeTk: filename=GenomeTreeTk-0.1.6-py3-none-any.whl size=989628 sha256=23308b77814d1a5c527e53d9f97e31f7dfabb641fc8fd30bef55233b4d21d324
2020-04-21T15:09:35,496   Stored in directory: /tmp/pip-ephem-wheel-cache-bfz4gmd0/wheels/8e/2a/bc/db7f52bf13101d05570da4644c3a825b3398d901b4d6c57ab1
2020-04-21T15:09:35,500 Successfully built GenomeTreeTk
2020-04-21T15:09:35,840 Cleaning up...
2020-04-21T15:09:35,841   Removing source in /tmp/pip-wheel-wi8svc23/GenomeTreeTk
2020-04-21T15:09:35,916 Removed build tracker: '/tmp/pip-req-tracker-crl50p3j'