Created temporary directory: /tmp/pip-ephem-wheel-cache-c37art_m Created temporary directory: /tmp/pip-req-tracker-g7iob7mj Created requirements tracker '/tmp/pip-req-tracker-g7iob7mj' Created temporary directory: /tmp/pip-wheel-3f8dn9gy Collecting pangolin==0.1.1 1 location(s) to search for versions of pangolin: * https://pypi.org/simple/pangolin/ Getting page https://pypi.org/simple/pangolin/ Analyzing links from page https://pypi.org/simple/pangolin/ Found link https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz#sha256=74e4a09d741726d620eec5a544ece812ee84307b371d0a4a0f95d0a5bd74913d (from https://pypi.org/simple/pangolin/), version: 0.1.1 Using version 0.1.1 (newest of versions: 0.1.1) Created temporary directory: /tmp/pip-unpack-o6ymrqvt Downloading https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz Downloading from URL https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz#sha256=74e4a09d741726d620eec5a544ece812ee84307b371d0a4a0f95d0a5bd74913d (from https://pypi.org/simple/pangolin/) Added pangolin==0.1.1 from https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz#sha256=74e4a09d741726d620eec5a544ece812ee84307b371d0a4a0f95d0a5bd74913d to build tracker '/tmp/pip-req-tracker-g7iob7mj' Running setup.py (path:/tmp/pip-wheel-3f8dn9gy/pangolin/setup.py) egg_info for package pangolin Running command python setup.py egg_info running egg_info creating pip-egg-info/pangolin.egg-info writing requirements to pip-egg-info/pangolin.egg-info/requires.txt writing top-level names to pip-egg-info/pangolin.egg-info/top_level.txt writing pip-egg-info/pangolin.egg-info/PKG-INFO writing dependency_links to pip-egg-info/pangolin.egg-info/dependency_links.txt writing entry points to pip-egg-info/pangolin.egg-info/entry_points.txt writing manifest file 'pip-egg-info/pangolin.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/pangolin.egg-info/SOURCES.txt' writing manifest file 'pip-egg-info/pangolin.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-3f8dn9gy/pangolin has version 0.1.1, which satisfies requirement pangolin==0.1.1 from https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz#sha256=74e4a09d741726d620eec5a544ece812ee84307b371d0a4a0f95d0a5bd74913d Removed pangolin==0.1.1 from https://files.pythonhosted.org/packages/08/c9/fd34352629c4a9d51b5c4818ce613458f00ac0a63bf640adfa18c06efd00/pangolin-0.1.1.tar.gz#sha256=74e4a09d741726d620eec5a544ece812ee84307b371d0a4a0f95d0a5bd74913d from build tracker '/tmp/pip-req-tracker-g7iob7mj' Building wheels for collected packages: pangolin Created temporary directory: /tmp/pip-wheel-ohq1jmuk Running setup.py bdist_wheel for pangolin: started Destination directory: /tmp/pip-wheel-ohq1jmuk Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-3f8dn9gy/pangolin/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-ohq1jmuk running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pangolin copying pangolin/__init__.py -> build/lib/pangolin copying pangolin/command.py -> build/lib/pangolin creating build/lib/pangolin/scripts copying pangolin/scripts/utils.py -> build/lib/pangolin/scripts copying pangolin/scripts/assign_lineage.py -> build/lib/pangolin/scripts copying pangolin/scripts/__init__.py -> build/lib/pangolin/scripts copying pangolin/scripts/lineage_finder.py -> build/lib/pangolin/scripts copying pangolin/scripts/defining_snps.py -> build/lib/pangolin/scripts running egg_info writing requirements to pangolin.egg-info/requires.txt writing entry points to pangolin.egg-info/entry_points.txt writing dependency_links to pangolin.egg-info/dependency_links.txt writing pangolin.egg-info/PKG-INFO writing top-level names to pangolin.egg-info/top_level.txt reading manifest file 'pangolin.egg-info/SOURCES.txt' writing manifest file 'pangolin.egg-info/SOURCES.txt' copying pangolin/scripts/Snakefile -> build/lib/pangolin/scripts copying pangolin/scripts/assign_query_file.smk -> build/lib/pangolin/scripts copying pangolin/scripts/assign_query_lineage.smk -> build/lib/pangolin/scripts copying pangolin/scripts/prepare_package_data.smk -> build/lib/pangolin/scripts running build_scripts creating build/scripts-3.4 copying pangolin/scripts/assign_query_file.smk -> build/scripts-3.4 copying pangolin/scripts/assign_query_lineage.smk -> build/scripts-3.4 copying pangolin/scripts/prepare_package_data.smk -> build/scripts-3.4 copying and adjusting pangolin/scripts/Snakefile -> build/scripts-3.4 copying and adjusting pangolin/scripts/assign_lineage.py -> build/scripts-3.4 copying and adjusting pangolin/scripts/lineage_finder.py -> build/scripts-3.4 copying pangolin/scripts/utils.py -> build/scripts-3.4 copying and adjusting pangolin/scripts/defining_snps.py -> build/scripts-3.4 copying pangolin/scripts/prepare_package_data.smk -> build/scripts-3.4 changing mode of build/scripts-3.4/assign_query_file.smk from 644 to 755 changing mode of build/scripts-3.4/assign_query_lineage.smk from 644 to 755 changing mode of build/scripts-3.4/prepare_package_data.smk from 644 to 755 changing mode of build/scripts-3.4/Snakefile from 644 to 755 changing mode of build/scripts-3.4/assign_lineage.py from 644 to 755 changing mode of build/scripts-3.4/lineage_finder.py from 644 to 755 changing mode of build/scripts-3.4/utils.py from 644 to 755 changing mode of build/scripts-3.4/defining_snps.py from 644 to 755 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/pangolin copying build/lib/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/pangolin copying build/lib/pangolin/command.py -> build/bdist.linux-armv7l/wheel/pangolin creating build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/assign_query_lineage.smk -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/utils.py -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/assign_lineage.py -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/assign_query_file.smk -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/prepare_package_data.smk -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/Snakefile -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/lineage_finder.py -> build/bdist.linux-armv7l/wheel/pangolin/scripts copying build/lib/pangolin/scripts/defining_snps.py -> build/bdist.linux-armv7l/wheel/pangolin/scripts running install_egg_info Copying pangolin.egg-info to build/bdist.linux-armv7l/wheel/pangolin-0.1.1-py3.4.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data creating build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/assign_query_lineage.smk -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/utils.py -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/assign_lineage.py -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/assign_query_file.smk -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/prepare_package_data.smk -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/Snakefile -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/lineage_finder.py -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts copying build/scripts-3.4/defining_snps.py -> build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/assign_query_lineage.smk to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/utils.py to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/assign_lineage.py to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/assign_query_file.smk to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/prepare_package_data.smk to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/Snakefile to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/lineage_finder.py to 755 changing mode of build/bdist.linux-armv7l/wheel/pangolin-0.1.1.data/scripts/defining_snps.py to 755 creating build/bdist.linux-armv7l/wheel/pangolin-0.1.1.dist-info/WHEEL creating '/tmp/pip-wheel-ohq1jmuk/pangolin-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'pangolin/__init__.py' adding 'pangolin/command.py' adding 'pangolin/scripts/Snakefile' adding 'pangolin/scripts/__init__.py' adding 'pangolin/scripts/assign_lineage.py' adding 'pangolin/scripts/assign_query_file.smk' adding 'pangolin/scripts/assign_query_lineage.smk' adding 'pangolin/scripts/defining_snps.py' adding 'pangolin/scripts/lineage_finder.py' adding 'pangolin/scripts/prepare_package_data.smk' adding 'pangolin/scripts/utils.py' adding 'pangolin-0.1.1.data/scripts/Snakefile' adding 'pangolin-0.1.1.data/scripts/assign_lineage.py' adding 'pangolin-0.1.1.data/scripts/assign_query_file.smk' adding 'pangolin-0.1.1.data/scripts/assign_query_lineage.smk' adding 'pangolin-0.1.1.data/scripts/defining_snps.py' adding 'pangolin-0.1.1.data/scripts/lineage_finder.py' adding 'pangolin-0.1.1.data/scripts/prepare_package_data.smk' adding 'pangolin-0.1.1.data/scripts/utils.py' adding 'pangolin-0.1.1.dist-info/METADATA' adding 'pangolin-0.1.1.dist-info/WHEEL' adding 'pangolin-0.1.1.dist-info/entry_points.txt' adding 'pangolin-0.1.1.dist-info/top_level.txt' adding 'pangolin-0.1.1.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for pangolin: finished with status 'done' Stored in directory: /tmp/tmpo9e08qx2 Successfully built pangolin Cleaning up... Removing source in /tmp/pip-wheel-3f8dn9gy/pangolin Removed build tracker '/tmp/pip-req-tracker-g7iob7mj'