2020-05-13T10:58:04,628 Created temporary directory: /tmp/pip-ephem-wheel-cache-ncdrrgjq
2020-05-13T10:58:04,632 Created temporary directory: /tmp/pip-req-tracker-0ftx3ovp
2020-05-13T10:58:04,633 Initialized build tracking at /tmp/pip-req-tracker-0ftx3ovp
2020-05-13T10:58:04,634 Created build tracker: /tmp/pip-req-tracker-0ftx3ovp
2020-05-13T10:58:04,634 Entered build tracker: /tmp/pip-req-tracker-0ftx3ovp
2020-05-13T10:58:04,635 Created temporary directory: /tmp/pip-wheel-tmosra09
2020-05-13T10:58:04,652 1 location(s) to search for versions of dcicpyvcf:
2020-05-13T10:58:04,652 * https://pypi.org/simple/dcicpyvcf/
2020-05-13T10:58:04,653 Fetching project page and analyzing links: https://pypi.org/simple/dcicpyvcf/
2020-05-13T10:58:04,654 Getting page https://pypi.org/simple/dcicpyvcf/
2020-05-13T10:58:04,656 Found index url https://pypi.org/simple
2020-05-13T10:58:04,947   Found link https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 (from https://pypi.org/simple/dcicpyvcf/), version: 1.0.0
2020-05-13T10:58:04,955 Given no hashes to check 1 links for project 'dcicpyvcf': discarding no candidates
2020-05-13T10:58:04,956 Using version 1.0.0 (newest of versions: 1.0.0)
2020-05-13T10:58:04,961 Collecting dcicpyvcf==1.0.0
2020-05-13T10:58:04,965   Created temporary directory: /tmp/pip-unpack-vixdlomb
2020-05-13T10:58:05,042   Downloading dcicpyvcf-1.0.0.tar.gz (35 kB)
2020-05-13T10:58:05,229   Added dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 to build tracker '/tmp/pip-req-tracker-0ftx3ovp'
2020-05-13T10:58:05,232     Running setup.py (path:/tmp/pip-wheel-tmosra09/dcicpyvcf/setup.py) egg_info for package dcicpyvcf
2020-05-13T10:58:05,234     Created temporary directory: /tmp/pip-pip-egg-info-_icakogl
2020-05-13T10:58:05,234     Running command python setup.py egg_info
2020-05-13T10:58:07,288     running egg_info
2020-05-13T10:58:07,292     creating /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info
2020-05-13T10:58:07,294     writing /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/PKG-INFO
2020-05-13T10:58:07,299     writing dependency_links to /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/dependency_links.txt
2020-05-13T10:58:07,303     writing entry points to /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/entry_points.txt
2020-05-13T10:58:07,305     writing requirements to /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/requires.txt
2020-05-13T10:58:07,308     writing top-level names to /tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/top_level.txt
2020-05-13T10:58:07,312     writing manifest file '/tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/SOURCES.txt'
2020-05-13T10:58:07,607     reading manifest file '/tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/SOURCES.txt'
2020-05-13T10:58:07,611     reading manifest template 'MANIFEST.in'
2020-05-13T10:58:07,630     writing manifest file '/tmp/pip-pip-egg-info-_icakogl/dcicpyvcf.egg-info/SOURCES.txt'
2020-05-13T10:58:07,756   Source in /tmp/pip-wheel-tmosra09/dcicpyvcf has version 1.0.0, which satisfies requirement dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449
2020-05-13T10:58:07,758   Removed dcicpyvcf==1.0.0 from https://files.pythonhosted.org/packages/d9/38/b41076d23ee2c6cea75aefc1a874571cfa54ee0784eb4a35818b7e83afae/dcicpyvcf-1.0.0.tar.gz#sha256=c5bf8d585002ab3b95d13a47803376b456b931865e4189c38a18cca47b108449 from build tracker '/tmp/pip-req-tracker-0ftx3ovp'
2020-05-13T10:58:07,762 Building wheels for collected packages: dcicpyvcf
2020-05-13T10:58:07,772   Created temporary directory: /tmp/pip-wheel-z4hdebfs
2020-05-13T10:58:07,773   Building wheel for dcicpyvcf (setup.py): started
2020-05-13T10:58:07,774   Destination directory: /tmp/pip-wheel-z4hdebfs
2020-05-13T10:58:07,774   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tmosra09/dcicpyvcf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tmosra09/dcicpyvcf/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-z4hdebfs
2020-05-13T10:58:09,823   running bdist_wheel
2020-05-13T10:58:09,832   running build
2020-05-13T10:58:09,832   running build_py
2020-05-13T10:58:10,101   creating build
2020-05-13T10:58:10,101   creating build/lib.linux-armv7l-3.7
2020-05-13T10:58:10,103   creating build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,106   copying vcf/__init__.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,109   copying vcf/utils.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,114   copying vcf/model.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,121   copying vcf/sample_filter.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,126   copying vcf/filters.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,132   copying vcf/parser.py -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,143   creating build/lib.linux-armv7l-3.7/vcf/test
2020-05-13T10:58:10,145   copying vcf/test/__init__.py -> build/lib.linux-armv7l-3.7/vcf/test
2020-05-13T10:58:10,149   copying vcf/test/prof.py -> build/lib.linux-armv7l-3.7/vcf/test
2020-05-13T10:58:10,154   copying vcf/test/test_vcf.py -> build/lib.linux-armv7l-3.7/vcf/test
2020-05-13T10:58:10,164   running egg_info
2020-05-13T10:58:10,188   writing dcicpyvcf.egg-info/PKG-INFO
2020-05-13T10:58:10,192   writing dependency_links to dcicpyvcf.egg-info/dependency_links.txt
2020-05-13T10:58:10,195   writing entry points to dcicpyvcf.egg-info/entry_points.txt
2020-05-13T10:58:10,198   writing requirements to dcicpyvcf.egg-info/requires.txt
2020-05-13T10:58:10,200   writing top-level names to dcicpyvcf.egg-info/top_level.txt
2020-05-13T10:58:10,214   reading manifest file 'dcicpyvcf.egg-info/SOURCES.txt'
2020-05-13T10:58:10,218   reading manifest template 'MANIFEST.in'
2020-05-13T10:58:10,235   writing manifest file 'dcicpyvcf.egg-info/SOURCES.txt'
2020-05-13T10:58:10,246   copying vcf/cparse.pyx -> build/lib.linux-armv7l-3.7/vcf
2020-05-13T10:58:10,259   /usr/local/lib/python3.7/dist-packages/setuptools/lib2to3_ex.py:44: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
2020-05-13T10:58:10,260     SetuptoolsDeprecationWarning)
2020-05-13T10:58:10,260   Fixing build/lib.linux-armv7l-3.7/vcf/__init__.py build/lib.linux-armv7l-3.7/vcf/utils.py build/lib.linux-armv7l-3.7/vcf/model.py build/lib.linux-armv7l-3.7/vcf/sample_filter.py build/lib.linux-armv7l-3.7/vcf/filters.py build/lib.linux-armv7l-3.7/vcf/parser.py build/lib.linux-armv7l-3.7/vcf/test/__init__.py build/lib.linux-armv7l-3.7/vcf/test/prof.py build/lib.linux-armv7l-3.7/vcf/test/test_vcf.py
2020-05-13T10:58:10,352   Skipping optional fixer: buffer
2020-05-13T10:58:10,498   Skipping optional fixer: idioms
2020-05-13T10:58:10,870   Skipping optional fixer: set_literal
2020-05-13T10:58:11,150   Skipping optional fixer: ws_comma
2020-05-13T10:58:19,685   Fixing build/lib.linux-armv7l-3.7/vcf/__init__.py build/lib.linux-armv7l-3.7/vcf/utils.py build/lib.linux-armv7l-3.7/vcf/model.py build/lib.linux-armv7l-3.7/vcf/sample_filter.py build/lib.linux-armv7l-3.7/vcf/filters.py build/lib.linux-armv7l-3.7/vcf/parser.py build/lib.linux-armv7l-3.7/vcf/test/__init__.py build/lib.linux-armv7l-3.7/vcf/test/prof.py build/lib.linux-armv7l-3.7/vcf/test/test_vcf.py
2020-05-13T10:58:19,704   Skipping optional fixer: buffer
2020-05-13T10:58:19,803   Skipping optional fixer: idioms
2020-05-13T10:58:20,089   Skipping optional fixer: set_literal
2020-05-13T10:58:20,280   Skipping optional fixer: ws_comma
2020-05-13T10:58:20,654   running build_ext
2020-05-13T10:58:20,766   cythoning vcf/cparse.pyx to vcf/cparse.c
2020-05-13T10:58:22,310   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-tmosra09/dcicpyvcf/vcf/cparse.pyx
2020-05-13T10:58:22,310     tree = Parsing.p_module(s, pxd, full_module_name)
2020-05-13T10:58:22,375   warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2020-05-13T10:58:22,375   warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2020-05-13T10:58:22,376   warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2020-05-13T10:58:22,376   warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2020-05-13T10:58:22,718   building 'vcf.cparse' extension
2020-05-13T10:58:22,719   creating build/temp.linux-armv7l-3.7
2020-05-13T10:58:22,720   creating build/temp.linux-armv7l-3.7/vcf
2020-05-13T10:58:22,722   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c vcf/cparse.c -o build/temp.linux-armv7l-3.7/vcf/cparse.o
2020-05-13T10:58:35,870   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/vcf/cparse.o -o build/lib.linux-armv7l-3.7/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so
2020-05-13T10:58:36,123   running build_scripts
2020-05-13T10:58:36,125   creating build/scripts-3.7
2020-05-13T10:58:36,129   copying and adjusting scripts/vcf_melt -> build/scripts-3.7
2020-05-13T10:58:36,135   copying and adjusting scripts/vcf_filter.py -> build/scripts-3.7
2020-05-13T10:58:36,142   copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.7
2020-05-13T10:58:36,144   changing mode of build/scripts-3.7/vcf_melt from 644 to 755
2020-05-13T10:58:36,145   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2020-05-13T10:58:36,146   changing mode of build/scripts-3.7/vcf_sample_filter.py from 644 to 755
2020-05-13T10:58:36,155   installing to build/bdist.linux-armv7l/wheel
2020-05-13T10:58:36,156   running install
2020-05-13T10:58:36,157   running install_lib
2020-05-13T10:58:36,165   creating build/bdist.linux-armv7l
2020-05-13T10:58:36,166   creating build/bdist.linux-armv7l/wheel
2020-05-13T10:58:36,170   creating build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,172   copying build/lib.linux-armv7l-3.7/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,176   copying build/lib.linux-armv7l-3.7/vcf/utils.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,180   copying build/lib.linux-armv7l-3.7/vcf/cparse.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,209   copying build/lib.linux-armv7l-3.7/vcf/model.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,218   copying build/lib.linux-armv7l-3.7/vcf/sample_filter.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,223   copying build/lib.linux-armv7l-3.7/vcf/filters.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,229   copying build/lib.linux-armv7l-3.7/vcf/parser.py -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,239   creating build/bdist.linux-armv7l/wheel/vcf/test
2020-05-13T10:58:36,241   copying build/lib.linux-armv7l-3.7/vcf/test/__init__.py -> build/bdist.linux-armv7l/wheel/vcf/test
2020-05-13T10:58:36,246   copying build/lib.linux-armv7l-3.7/vcf/test/prof.py -> build/bdist.linux-armv7l/wheel/vcf/test
2020-05-13T10:58:36,251   copying build/lib.linux-armv7l-3.7/vcf/test/test_vcf.py -> build/bdist.linux-armv7l/wheel/vcf/test
2020-05-13T10:58:36,263   copying build/lib.linux-armv7l-3.7/vcf/cparse.pyx -> build/bdist.linux-armv7l/wheel/vcf
2020-05-13T10:58:36,267   running install_egg_info
2020-05-13T10:58:36,292   Copying dcicpyvcf.egg-info to build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0-py3.7.egg-info
2020-05-13T10:58:36,327   running install_scripts
2020-05-13T10:58:36,385   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data
2020-05-13T10:58:36,386   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2020-05-13T10:58:36,389   copying build/scripts-3.7/vcf_melt -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2020-05-13T10:58:36,395   copying build/scripts-3.7/vcf_sample_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2020-05-13T10:58:36,399   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts
2020-05-13T10:58:36,404   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_melt to 755
2020-05-13T10:58:36,404   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_sample_filter.py to 755
2020-05-13T10:58:36,405   changing mode of build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.data/scripts/vcf_filter.py to 755
2020-05-13T10:58:36,469   creating build/bdist.linux-armv7l/wheel/dcicpyvcf-1.0.0.dist-info/WHEEL
2020-05-13T10:58:36,474   creating '/tmp/pip-wheel-z4hdebfs/dcicpyvcf-1.0.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-05-13T10:58:36,481   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_filter.py'
2020-05-13T10:58:36,484   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_melt'
2020-05-13T10:58:36,486   adding 'dcicpyvcf-1.0.0.data/scripts/vcf_sample_filter.py'
2020-05-13T10:58:36,492   adding 'vcf/__init__.py'
2020-05-13T10:58:36,584   adding 'vcf/cparse.cpython-37m-arm-linux-gnueabihf.so'
2020-05-13T10:58:36,590   adding 'vcf/cparse.pyx'
2020-05-13T10:58:36,593   adding 'vcf/filters.py'
2020-05-13T10:58:36,599   adding 'vcf/model.py'
2020-05-13T10:58:36,606   adding 'vcf/parser.py'
2020-05-13T10:58:36,609   adding 'vcf/sample_filter.py'
2020-05-13T10:58:36,612   adding 'vcf/utils.py'
2020-05-13T10:58:36,616   adding 'vcf/test/__init__.py'
2020-05-13T10:58:36,618   adding 'vcf/test/prof.py'
2020-05-13T10:58:36,627   adding 'vcf/test/test_vcf.py'
2020-05-13T10:58:36,630   adding 'dcicpyvcf-1.0.0.dist-info/METADATA'
2020-05-13T10:58:36,632   adding 'dcicpyvcf-1.0.0.dist-info/WHEEL'
2020-05-13T10:58:36,634   adding 'dcicpyvcf-1.0.0.dist-info/entry_points.txt'
2020-05-13T10:58:36,636   adding 'dcicpyvcf-1.0.0.dist-info/top_level.txt'
2020-05-13T10:58:36,637   adding 'dcicpyvcf-1.0.0.dist-info/RECORD'
2020-05-13T10:58:36,652   removing build/bdist.linux-armv7l/wheel
2020-05-13T10:58:36,950   Building wheel for dcicpyvcf (setup.py): finished with status 'done'
2020-05-13T10:58:36,956   Created wheel for dcicpyvcf: filename=dcicpyvcf-1.0.0-cp37-cp37m-linux_armv7l.whl size=142648 sha256=508db4d5cc2bae30c9adc9dc932b6153ced2ca31355ae4e97523cbd10b87a8b3
2020-05-13T10:58:36,957   Stored in directory: /tmp/pip-ephem-wheel-cache-ncdrrgjq/wheels/b6/e8/ea/53be4b9cd6538852fe00f0cefb392220d2148b24cb5b9129ec
2020-05-13T10:58:36,961 Successfully built dcicpyvcf
2020-05-13T10:58:36,993 Removed build tracker: '/tmp/pip-req-tracker-0ftx3ovp'