2020-05-19T02:49:27,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-5dm1drnj
2020-05-19T02:49:27,945 Created temporary directory: /tmp/pip-req-tracker-fkaj5o6b
2020-05-19T02:49:27,946 Initialized build tracking at /tmp/pip-req-tracker-fkaj5o6b
2020-05-19T02:49:27,946 Created build tracker: /tmp/pip-req-tracker-fkaj5o6b
2020-05-19T02:49:27,947 Entered build tracker: /tmp/pip-req-tracker-fkaj5o6b
2020-05-19T02:49:27,948 Created temporary directory: /tmp/pip-wheel-2zdli2r1
2020-05-19T02:49:27,971 1 location(s) to search for versions of bacphlip:
2020-05-19T02:49:27,971 * https://pypi.org/simple/bacphlip/
2020-05-19T02:49:27,971 Fetching project page and analyzing links: https://pypi.org/simple/bacphlip/
2020-05-19T02:49:27,972 Getting page https://pypi.org/simple/bacphlip/
2020-05-19T02:49:27,974 Found index url https://pypi.org/simple
2020-05-19T02:49:28,182   Found link https://files.pythonhosted.org/packages/2b/74/5e998f583cf6561adca649d8d848c84a9cbf3d0ae7cbb67e729723f4e341/bacphlip-0.9.tar.gz#sha256=9ada32c22ba329e76ddbabefed42fc7d45c307e73e5ec6d8e534a1b4dfa10274 (from https://pypi.org/simple/bacphlip/) (requires-python:>=3.6), version: 0.9
2020-05-19T02:49:28,183   Found link https://files.pythonhosted.org/packages/ae/15/8d3cfb9894d07d399d0f4cfcc24852dee5785545dcc49a4166addf2eec10/bacphlip-0.9.1.tar.gz#sha256=4581c520f2d0c549b2a838589a05737d4a1f4bb30ec3df895d2aaaab8a2192ca (from https://pypi.org/simple/bacphlip/) (requires-python:>=3.6), version: 0.9.1
2020-05-19T02:49:28,184   Found link https://files.pythonhosted.org/packages/63/05/3017fa934dda0aa49c731e5b3ccb8e1e9d5186f8b294d589a61872886bd1/bacphlip-0.9.2.tar.gz#sha256=8071422edfd213218b91271cccd612013e559eb15024e4234e55c96fa5b9eecf (from https://pypi.org/simple/bacphlip/) (requires-python:>=3.6), version: 0.9.2
2020-05-19T02:49:28,185   Found link https://files.pythonhosted.org/packages/88/00/82a56862a892a07da25926d78793d9e85b846268ecefe1f705acfbfe50d9/bacphlip-0.9.3.tar.gz#sha256=c8642a4191b6d638dc795b80ca9aea69a949ad73243b47684a44b39265438093 (from https://pypi.org/simple/bacphlip/) (requires-python:>=3.6), version: 0.9.3
2020-05-19T02:49:28,193 Given no hashes to check 1 links for project 'bacphlip': discarding no candidates
2020-05-19T02:49:28,194 Using version 0.9.3 (newest of versions: 0.9.3)
2020-05-19T02:49:28,200 Collecting bacphlip==0.9.3
2020-05-19T02:49:28,204   Created temporary directory: /tmp/pip-unpack-jin2y9ry
2020-05-19T02:49:29,714   Downloading bacphlip-0.9.3.tar.gz (10.2 MB)
2020-05-19T02:49:41,365   Added bacphlip==0.9.3 from https://files.pythonhosted.org/packages/88/00/82a56862a892a07da25926d78793d9e85b846268ecefe1f705acfbfe50d9/bacphlip-0.9.3.tar.gz#sha256=c8642a4191b6d638dc795b80ca9aea69a949ad73243b47684a44b39265438093 to build tracker '/tmp/pip-req-tracker-fkaj5o6b'
2020-05-19T02:49:41,369     Running setup.py (path:/tmp/pip-wheel-2zdli2r1/bacphlip/setup.py) egg_info for package bacphlip
2020-05-19T02:49:41,371     Created temporary directory: /tmp/pip-pip-egg-info-o14xkpa5
2020-05-19T02:49:41,372     Running command python setup.py egg_info
2020-05-19T02:49:44,036     running egg_info
2020-05-19T02:49:44,040     creating /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info
2020-05-19T02:49:44,042     writing /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/PKG-INFO
2020-05-19T02:49:44,048     writing dependency_links to /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/dependency_links.txt
2020-05-19T02:49:44,051     writing entry points to /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/entry_points.txt
2020-05-19T02:49:44,054     writing requirements to /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/requires.txt
2020-05-19T02:49:44,058     writing top-level names to /tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/top_level.txt
2020-05-19T02:49:44,061     writing manifest file '/tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/SOURCES.txt'
2020-05-19T02:49:44,422     reading manifest file '/tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/SOURCES.txt'
2020-05-19T02:49:44,428     reading manifest template 'MANIFEST.in'
2020-05-19T02:49:44,449     writing manifest file '/tmp/pip-pip-egg-info-o14xkpa5/bacphlip.egg-info/SOURCES.txt'
2020-05-19T02:49:44,626   Source in /tmp/pip-wheel-2zdli2r1/bacphlip has version 0.9.3, which satisfies requirement bacphlip==0.9.3 from https://files.pythonhosted.org/packages/88/00/82a56862a892a07da25926d78793d9e85b846268ecefe1f705acfbfe50d9/bacphlip-0.9.3.tar.gz#sha256=c8642a4191b6d638dc795b80ca9aea69a949ad73243b47684a44b39265438093
2020-05-19T02:49:44,628   Removed bacphlip==0.9.3 from https://files.pythonhosted.org/packages/88/00/82a56862a892a07da25926d78793d9e85b846268ecefe1f705acfbfe50d9/bacphlip-0.9.3.tar.gz#sha256=c8642a4191b6d638dc795b80ca9aea69a949ad73243b47684a44b39265438093 from build tracker '/tmp/pip-req-tracker-fkaj5o6b'
2020-05-19T02:49:44,635 Building wheels for collected packages: bacphlip
2020-05-19T02:49:44,650   Created temporary directory: /tmp/pip-wheel-ux7cyoo7
2020-05-19T02:49:44,651   Building wheel for bacphlip (setup.py): started
2020-05-19T02:49:44,652   Destination directory: /tmp/pip-wheel-ux7cyoo7
2020-05-19T02:49:44,653   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2zdli2r1/bacphlip/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2zdli2r1/bacphlip/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ux7cyoo7
2020-05-19T02:49:47,089   running bdist_wheel
2020-05-19T02:49:47,115   running build
2020-05-19T02:49:47,116   running build_py
2020-05-19T02:49:47,454   creating build
2020-05-19T02:49:47,456   creating build/lib
2020-05-19T02:49:47,458   creating build/lib/bacphlip
2020-05-19T02:49:47,462   copying bacphlip/__init__.py -> build/lib/bacphlip
2020-05-19T02:49:47,466   copying bacphlip/__main__.py -> build/lib/bacphlip
2020-05-19T02:49:47,472   copying bacphlip/bacphlip.py -> build/lib/bacphlip
2020-05-19T02:49:47,477   running egg_info
2020-05-19T02:49:47,508   writing bacphlip.egg-info/PKG-INFO
2020-05-19T02:49:47,518   writing dependency_links to bacphlip.egg-info/dependency_links.txt
2020-05-19T02:49:47,519   writing entry points to bacphlip.egg-info/entry_points.txt
2020-05-19T02:49:47,520   writing requirements to bacphlip.egg-info/requires.txt
2020-05-19T02:49:47,523   writing top-level names to bacphlip.egg-info/top_level.txt
2020-05-19T02:49:47,533   reading manifest file 'bacphlip.egg-info/SOURCES.txt'
2020-05-19T02:49:47,538   reading manifest template 'MANIFEST.in'
2020-05-19T02:49:47,556   writing manifest file 'bacphlip.egg-info/SOURCES.txt'
2020-05-19T02:49:47,562   creating build/lib/bacphlip/data
2020-05-19T02:49:47,565   copying bacphlip/data/prot_models.hmm -> build/lib/bacphlip/data
2020-05-19T02:49:53,386   copying bacphlip/data/rf_best.joblib -> build/lib/bacphlip/data
2020-05-19T02:49:53,485   creating build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,493   copying bacphlip/data/example_data/genome_example.fasta -> build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,511   copying bacphlip/data/example_data/genome_example.fasta.6frame -> build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,530   copying bacphlip/data/example_data/genome_example.fasta.bacphlip -> build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,536   copying bacphlip/data/example_data/genome_example.fasta.hmmsearch -> build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,576   copying bacphlip/data/example_data/genome_example.fasta.hmmsearch.tsv -> build/lib/bacphlip/data/example_data
2020-05-19T02:49:53,592   installing to build/bdist.linux-armv7l/wheel
2020-05-19T02:49:53,593   running install
2020-05-19T02:49:53,595   running install_lib
2020-05-19T02:49:53,604   creating build/bdist.linux-armv7l
2020-05-19T02:49:53,605   creating build/bdist.linux-armv7l/wheel
2020-05-19T02:49:53,612   creating build/bdist.linux-armv7l/wheel/bacphlip
2020-05-19T02:49:53,617   creating build/bdist.linux-armv7l/wheel/bacphlip/data
2020-05-19T02:49:53,619   copying build/lib/bacphlip/data/rf_best.joblib -> build/bdist.linux-armv7l/wheel/bacphlip/data
2020-05-19T02:49:53,718   copying build/lib/bacphlip/data/prot_models.hmm -> build/bdist.linux-armv7l/wheel/bacphlip/data
2020-05-19T02:49:59,595   creating build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,598   copying build/lib/bacphlip/data/example_data/genome_example.fasta -> build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,608   copying build/lib/bacphlip/data/example_data/genome_example.fasta.bacphlip -> build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,617   copying build/lib/bacphlip/data/example_data/genome_example.fasta.6frame -> build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,630   copying build/lib/bacphlip/data/example_data/genome_example.fasta.hmmsearch -> build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,664   copying build/lib/bacphlip/data/example_data/genome_example.fasta.hmmsearch.tsv -> build/bdist.linux-armv7l/wheel/bacphlip/data/example_data
2020-05-19T02:49:59,670   copying build/lib/bacphlip/__init__.py -> build/bdist.linux-armv7l/wheel/bacphlip
2020-05-19T02:49:59,674   copying build/lib/bacphlip/__main__.py -> build/bdist.linux-armv7l/wheel/bacphlip
2020-05-19T02:49:59,680   copying build/lib/bacphlip/bacphlip.py -> build/bdist.linux-armv7l/wheel/bacphlip
2020-05-19T02:49:59,685   running install_egg_info
2020-05-19T02:49:59,700   Copying bacphlip.egg-info to build/bdist.linux-armv7l/wheel/bacphlip-0.9.3-py3.7.egg-info
2020-05-19T02:49:59,748   running install_scripts
2020-05-19T02:49:59,992   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2020-05-19T02:50:00,011   creating build/bdist.linux-armv7l/wheel/bacphlip-0.9.3.dist-info/WHEEL
2020-05-19T02:50:00,019   creating '/tmp/pip-wheel-ux7cyoo7/bacphlip-0.9.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-05-19T02:50:00,027   adding 'bacphlip/__init__.py'
2020-05-19T02:50:00,032   adding 'bacphlip/__main__.py'
2020-05-19T02:50:00,036   adding 'bacphlip/bacphlip.py'
2020-05-19T02:50:16,761   adding 'bacphlip/data/prot_models.hmm'
2020-05-19T02:50:17,709   adding 'bacphlip/data/rf_best.joblib'
2020-05-19T02:50:17,758   adding 'bacphlip/data/example_data/genome_example.fasta'
2020-05-19T02:50:17,773   adding 'bacphlip/data/example_data/genome_example.fasta.6frame'
2020-05-19T02:50:17,777   adding 'bacphlip/data/example_data/genome_example.fasta.bacphlip'
2020-05-19T02:50:17,799   adding 'bacphlip/data/example_data/genome_example.fasta.hmmsearch'
2020-05-19T02:50:17,806   adding 'bacphlip/data/example_data/genome_example.fasta.hmmsearch.tsv'
2020-05-19T02:50:17,812   adding 'bacphlip-0.9.3.dist-info/LICENSE.txt'
2020-05-19T02:50:17,815   adding 'bacphlip-0.9.3.dist-info/METADATA'
2020-05-19T02:50:17,817   adding 'bacphlip-0.9.3.dist-info/WHEEL'
2020-05-19T02:50:17,819   adding 'bacphlip-0.9.3.dist-info/entry_points.txt'
2020-05-19T02:50:17,821   adding 'bacphlip-0.9.3.dist-info/top_level.txt'
2020-05-19T02:50:17,822   adding 'bacphlip-0.9.3.dist-info/RECORD'
2020-05-19T02:50:18,775   removing build/bdist.linux-armv7l/wheel
2020-05-19T02:50:18,992   Building wheel for bacphlip (setup.py): finished with status 'done'
2020-05-19T02:50:19,171   Created wheel for bacphlip: filename=bacphlip-0.9.3-py3-none-any.whl size=10357993 sha256=dd73676211c593c3e298e6f7d27ef310735b53de48dfeb015b312ec27a2026d6
2020-05-19T02:50:19,172   Stored in directory: /tmp/pip-ephem-wheel-cache-5dm1drnj/wheels/02/17/0b/08e7a66c2456cd04d8646cd6f39ad637d128a796e4225176a6
2020-05-19T02:50:19,177 Successfully built bacphlip
2020-05-19T02:50:21,068 Removed build tracker: '/tmp/pip-req-tracker-fkaj5o6b'