2020-05-21T17:35:54 Created temporary directory: /tmp/pip-ephem-wheel-cache-u950zr8d
2020-05-21T17:35:54 Created temporary directory: /tmp/pip-req-tracker-_t5eul8l
2020-05-21T17:35:54 Created requirements tracker '/tmp/pip-req-tracker-_t5eul8l'
2020-05-21T17:35:54 Created temporary directory: /tmp/pip-wheel-s1gqccfa
2020-05-21T17:35:54 Collecting mitos==2.0.8
2020-05-21T17:35:54   1 location(s) to search for versions of mitos:
2020-05-21T17:35:54   * https://pypi.org/simple/mitos/
2020-05-21T17:35:54   Getting page https://pypi.org/simple/mitos/
2020-05-21T17:35:54   Analyzing links from page https://pypi.org/simple/mitos/
2020-05-21T17:35:55     Skipping link https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl#sha256=8231d691ae63545671137f78273b95ecb414c2d741f76d9246bd46c3db4fe1ce (from https://pypi.org/simple/mitos/); it is not compatible with this Python
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz#sha256=222d58b100e37887a073129ed79850526188511853b780dd3d11fc9a03c5f61c (from https://pypi.org/simple/mitos/), version: 1.0
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz#sha256=de00eecb47f5a67c4a27104c87b4d6e26f1c9eddc86369864f7aed1b486c21c6 (from https://pypi.org/simple/mitos/), version: 1.0.1
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz#sha256=321dba26e0bb1eefe71ccfac1da1a2ac65c2aa0a797c02375e8d40b9463928c5 (from https://pypi.org/simple/mitos/), version: 1.0.2
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz#sha256=bce4c949809f1f6b05800ae1e750dc4348c01310e2a89716e7811bba9b5807f2 (from https://pypi.org/simple/mitos/), version: 1.0.3
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz#sha256=891b17e6b58808b9485bcf40ae0f349f9a3ec196e2a953d9494c286cd50322b3 (from https://pypi.org/simple/mitos/), version: 1.0.4
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz#sha256=b626b066e8b50232e750a96157016ab792f63a7a44d8d5d5fe3f79a2c8279038 (from https://pypi.org/simple/mitos/), version: 1.0.5
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz#sha256=cc622e1f408b04f840f9c11db1f5639c7ce5798869728bd65fcda1fd4d228099 (from https://pypi.org/simple/mitos/), version: 2.0.1
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz#sha256=33379678bdd1e8d2d6e77154094c02a5832dfafd767b1b3f23260d979de3847b (from https://pypi.org/simple/mitos/), version: 2.0.2
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz#sha256=e14414c66dde6d2b46b69feec2b32c9b93f05ec5b72c99e542d1633210620016 (from https://pypi.org/simple/mitos/), version: 2.0.3
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz#sha256=4b4b3d11a7098b3bcb2298958490faa609f75b435245ef189e193bc509f44905 (from https://pypi.org/simple/mitos/), version: 2.0.4
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz#sha256=834f10c9c3cbf44e54a8392e5ec9921952e7aa4828f8d12db5e2062942df358d (from https://pypi.org/simple/mitos/), version: 2.0.5
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz#sha256=3b13799560e7d713ae1e46515ee6052e7422f1f0c1bad8059d2b016385880bcf (from https://pypi.org/simple/mitos/), version: 2.0.6
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz#sha256=fd7f4d76a1f7d33ef96d6d86172b894da9dedf186615bf4d490419db43b3c1fc (from https://pypi.org/simple/mitos/), version: 2.0.7
2020-05-21T17:35:55     Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe (from https://pypi.org/simple/mitos/), version: 2.0.8
2020-05-21T17:35:55   Using version 2.0.8 (newest of versions: 2.0.8)
2020-05-21T17:35:55   Created temporary directory: /tmp/pip-unpack-vxfjmtui
2020-05-21T17:35:55   Downloading https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (307kB)
2020-05-21T17:35:55   Downloading from URL https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe (from https://pypi.org/simple/mitos/)
2020-05-21T17:35:56   Added mitos==2.0.8 from https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe to build tracker '/tmp/pip-req-tracker-_t5eul8l'
2020-05-21T17:35:56     Running setup.py (path:/tmp/pip-wheel-s1gqccfa/mitos/setup.py) egg_info for package mitos
2020-05-21T17:35:56     Running command python setup.py egg_info
2020-05-21T17:35:58     running egg_info
2020-05-21T17:35:58     creating pip-egg-info/mitos.egg-info
2020-05-21T17:35:58     writing dependency_links to pip-egg-info/mitos.egg-info/dependency_links.txt
2020-05-21T17:35:58     writing requirements to pip-egg-info/mitos.egg-info/requires.txt
2020-05-21T17:35:58     writing pip-egg-info/mitos.egg-info/PKG-INFO
2020-05-21T17:35:58     writing top-level names to pip-egg-info/mitos.egg-info/top_level.txt
2020-05-21T17:35:58     writing manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2020-05-21T17:35:58     reading manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2020-05-21T17:35:58     reading manifest template 'MANIFEST.in'
2020-05-21T17:35:58     warning: no files found matching 'mitos/codons/gc.prt'
2020-05-21T17:35:58     writing manifest file 'pip-egg-info/mitos.egg-info/SOURCES.txt'
2020-05-21T17:35:58   Source in /tmp/pip-wheel-s1gqccfa/mitos has version 2.0.8, which satisfies requirement mitos==2.0.8 from https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe
2020-05-21T17:35:58   Removed mitos==2.0.8 from https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz#sha256=dd6c8ae202edae80874d99968df974f767d040adbf1947828fa71d5382c18ffe from build tracker '/tmp/pip-req-tracker-_t5eul8l'
2020-05-21T17:35:58 Building wheels for collected packages: mitos
2020-05-21T17:35:58   Created temporary directory: /tmp/pip-wheel-00zsopn4
2020-05-21T17:35:58   Building wheel for mitos (setup.py): started
2020-05-21T17:35:58   Destination directory: /tmp/pip-wheel-00zsopn4
2020-05-21T17:35:58   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-s1gqccfa/mitos/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-00zsopn4
2020-05-21T17:36:00   running bdist_wheel
2020-05-21T17:36:00   running build
2020-05-21T17:36:00   running build_py
2020-05-21T17:36:01   creating build
2020-05-21T17:36:01   creating build/lib
2020-05-21T17:36:01   creating build/lib/mitos
2020-05-21T17:36:01   copying mitos/cmsearch_parse_separate.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/trnadist.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/convert_tree.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/codoncount.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/update-mitolog.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/skew.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/trnascan_parse_separate.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/booreparser.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/merge_results.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mitoloc.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mitos-extension.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/create_prot_fasta.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mitoscs.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/trna-cm.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/removegene.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/prepareFiles.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/get-wancy.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/inihit.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/ogre-geneorder.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/names.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mitos-extension2.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mitoch_revisions.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/CONFIG.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/__init__.py -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/mumcmp.py -> build/lib/mitos
2020-05-21T17:36:01   creating build/lib/mitos/mitofile
2020-05-21T17:36:01   copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile
2020-05-21T17:36:01   creating build/lib/mitos/tax
2020-05-21T17:36:01   copying mitos/tax/__init__.py -> build/lib/mitos/tax
2020-05-21T17:36:01   creating build/lib/mitos/mergefeature
2020-05-21T17:36:01   copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature
2020-05-21T17:36:01   creating build/lib/mitos/bedfile
2020-05-21T17:36:01   copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile
2020-05-21T17:36:01   creating build/lib/mitos/mito
2020-05-21T17:36:01   copying mitos/mito/__init__.py -> build/lib/mitos/mito
2020-05-21T17:36:01   creating build/lib/mitos/feature
2020-05-21T17:36:01   copying mitos/feature/__init__.py -> build/lib/mitos/feature
2020-05-21T17:36:01   creating build/lib/mitos/extprog
2020-05-21T17:36:01   copying mitos/extprog/__init__.py -> build/lib/mitos/extprog
2020-05-21T17:36:01   creating build/lib/mitos/mitfi
2020-05-21T17:36:01   copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi
2020-05-21T17:36:01   creating build/lib/mitos/sequence
2020-05-21T17:36:01   copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence
2020-05-21T17:36:01   copying mitos/sequence/__init__.py -> build/lib/mitos/sequence
2020-05-21T17:36:01   creating build/lib/mitos/gb
2020-05-21T17:36:01   copying mitos/gb/unify.py -> build/lib/mitos/gb
2020-05-21T17:36:01   copying mitos/gb/__init__.py -> build/lib/mitos/gb
2020-05-21T17:36:01   creating build/lib/mitos/draw
2020-05-21T17:36:01   copying mitos/draw/__init__.py -> build/lib/mitos/draw
2020-05-21T17:36:01   creating build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/__init__.py -> build/lib/mitos/webserver
2020-05-21T17:36:01   creating build/lib/mitos/tbl
2020-05-21T17:36:01   copying mitos/tbl/__init__.py -> build/lib/mitos/tbl
2020-05-21T17:36:01   creating build/lib/mitos/gfffile
2020-05-21T17:36:01   copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile
2020-05-21T17:36:01   creating build/lib/mitos/trna
2020-05-21T17:36:01   copying mitos/trna/arwenscan.py -> build/lib/mitos/trna
2020-05-21T17:36:01   copying mitos/trna/trnascan.py -> build/lib/mitos/trna
2020-05-21T17:36:01   copying mitos/trna/__init__.py -> build/lib/mitos/trna
2020-05-21T17:36:01   creating build/lib/mitos/sequin
2020-05-21T17:36:01   copying mitos/sequin/__init__.py -> build/lib/mitos/sequin
2020-05-21T17:36:01   creating build/lib/mitos/blast
2020-05-21T17:36:01   copying mitos/blast/__init__.py -> build/lib/mitos/blast
2020-05-21T17:36:01   creating build/lib/mitos/update
2020-05-21T17:36:01   copying mitos/update/__init__.py -> build/lib/mitos/update
2020-05-21T17:36:01   creating build/lib/mitos/protfeat
2020-05-21T17:36:01   copying mitos/protfeat/__init__.py -> build/lib/mitos/protfeat
2020-05-21T17:36:01   creating build/lib/mitos/rna
2020-05-21T17:36:01   copying mitos/rna/vienna.py -> build/lib/mitos/rna
2020-05-21T17:36:01   copying mitos/rna/forester.py -> build/lib/mitos/rna
2020-05-21T17:36:01   copying mitos/rna/__init__.py -> build/lib/mitos/rna
2020-05-21T17:36:01   running egg_info
2020-05-21T17:36:01   writing dependency_links to mitos.egg-info/dependency_links.txt
2020-05-21T17:36:01   writing requirements to mitos.egg-info/requires.txt
2020-05-21T17:36:01   writing mitos.egg-info/PKG-INFO
2020-05-21T17:36:01   writing top-level names to mitos.egg-info/top_level.txt
2020-05-21T17:36:01   reading manifest file 'mitos.egg-info/SOURCES.txt'
2020-05-21T17:36:01   reading manifest template 'MANIFEST.in'
2020-05-21T17:36:01   warning: no files found matching 'mitos/codons/gc.prt'
2020-05-21T17:36:01   writing manifest file 'mitos.egg-info/SOURCES.txt'
2020-05-21T17:36:01   copying mitos/plotprot.R -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/plotrna.R -> build/lib/mitos
2020-05-21T17:36:01   copying mitos/plotstst.R -> build/lib/mitos
2020-05-21T17:36:01   creating build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser
2020-05-21T17:36:01   copying mitos/webserver/help.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/history.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/index.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/news.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/upload.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   copying mitos/webserver/wait.txt -> build/lib/mitos/webserver
2020-05-21T17:36:01   running build_scripts
2020-05-21T17:36:01   creating build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting runmitos.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting analyse.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting gcpp.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting geneorder.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting getfeatures.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting getinfo.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting refseqsplit.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting subseq.py -> build/scripts-3.5
2020-05-21T17:36:01   copying and adjusting taxtree.py -> build/scripts-3.5
2020-05-21T17:36:01   copying update-blastdb.py -> build/scripts-3.5
2020-05-21T17:36:01   copying mitos/plotprot.R -> build/scripts-3.5
2020-05-21T17:36:01   copying mitos/plotstst.R -> build/scripts-3.5
2020-05-21T17:36:01   copying mitos/plotrna.R -> build/scripts-3.5
2020-05-21T17:36:01   changing mode of build/scripts-3.5/runmitos.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/analyse.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/gcpp.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/geneorder.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/getfeatures.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/getinfo.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/refseqsplit.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/subseq.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/taxtree.py from 644 to 755
2020-05-21T17:36:01   changing mode of build/scripts-3.5/update-blastdb.py from 644 to 755
2020-05-21T17:36:01   installing to build/bdist.linux-armv7l/wheel
2020-05-21T17:36:01   running install
2020-05-21T17:36:01   running install_lib
2020-05-21T17:36:01   creating build/bdist.linux-armv7l
2020-05-21T17:36:01   creating build/bdist.linux-armv7l/wheel
2020-05-21T17:36:01   creating build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:01   copying build/lib/mitos/cmsearch_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:01   creating build/bdist.linux-armv7l/wheel/mitos/mitofile
2020-05-21T17:36:01   copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile
2020-05-21T17:36:01   copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:01   creating build/bdist.linux-armv7l/wheel/mitos/tax
2020-05-21T17:36:01   copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/mergefeature
2020-05-21T17:36:02   copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature
2020-05-21T17:36:02   copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/codoncount.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/bedfile
2020-05-21T17:36:02   copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile
2020-05-21T17:36:02   copying build/lib/mitos/trnascan_parse_separate.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/mito
2020-05-21T17:36:02   copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito
2020-05-21T17:36:02   copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/feature
2020-05-21T17:36:02   copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature
2020-05-21T17:36:02   copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/extprog
2020-05-21T17:36:02   copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/mitfi
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org.pre-circ -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.org -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar.old -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser
2020-05-21T17:36:02   copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/sequence
2020-05-21T17:36:02   copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2020-05-21T17:36:02   copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence
2020-05-21T17:36:02   copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/gb
2020-05-21T17:36:02   copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2020-05-21T17:36:02   copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb
2020-05-21T17:36:02   copying build/lib/mitos/merge_results.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/draw
2020-05-21T17:36:02   copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw
2020-05-21T17:36:02   copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver
2020-05-21T17:36:02   copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/tbl
2020-05-21T17:36:02   copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl
2020-05-21T17:36:02   copying build/lib/mitos/mitoscs.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/get-wancy.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/gfffile
2020-05-21T17:36:02   copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/trna
2020-05-21T17:36:02   copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2020-05-21T17:36:02   copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2020-05-21T17:36:02   copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna
2020-05-21T17:36:02   copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/sequin
2020-05-21T17:36:02   copying build/lib/mitos/sequin/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequin
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/blast
2020-05-21T17:36:02   copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/update
2020-05-21T17:36:02   copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update
2020-05-21T17:36:02   copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/protfeat
2020-05-21T17:36:02   copying build/lib/mitos/protfeat/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/protfeat
2020-05-21T17:36:02   copying build/lib/mitos/names.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos/rna
2020-05-21T17:36:02   copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2020-05-21T17:36:02   copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2020-05-21T17:36:02   copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna
2020-05-21T17:36:02   copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   copying build/lib/mitos/mumcmp.py -> build/bdist.linux-armv7l/wheel/mitos
2020-05-21T17:36:02   running install_egg_info
2020-05-21T17:36:02   Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-2.0.8-py3.5.egg-info
2020-05-21T17:36:02   running install_scripts
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos-2.0.8.data
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/plotstst.R -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   copying build/scripts-3.5/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/refseqsplit.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/runmitos.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/update-blastdb.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/getinfo.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/analyse.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/taxtree.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/plotprot.R to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/plotrna.R to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/plotstst.R to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/gcpp.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/geneorder.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/subseq.py to 755
2020-05-21T17:36:02   changing mode of build/bdist.linux-armv7l/wheel/mitos-2.0.8.data/scripts/getfeatures.py to 755
2020-05-21T17:36:02   creating build/bdist.linux-armv7l/wheel/mitos-2.0.8.dist-info/WHEEL
2020-05-21T17:36:03   Building wheel for mitos (setup.py): finished with status 'done'
2020-05-21T17:36:03   Stored in directory: /tmp/tmpyd7b0log
2020-05-21T17:36:03 Successfully built mitos
2020-05-21T17:36:03 Cleaning up...
2020-05-21T17:36:03   Removing source in /tmp/pip-wheel-s1gqccfa/mitos
2020-05-21T17:36:03 Removed build tracker '/tmp/pip-req-tracker-_t5eul8l'