2020-05-27T18:51:25,220 Created temporary directory: /tmp/pip-ephem-wheel-cache-xe00myx9 2020-05-27T18:51:25,224 Created temporary directory: /tmp/pip-req-tracker-fv9nweuv 2020-05-27T18:51:25,225 Initialized build tracking at /tmp/pip-req-tracker-fv9nweuv 2020-05-27T18:51:25,227 Created build tracker: /tmp/pip-req-tracker-fv9nweuv 2020-05-27T18:51:25,228 Entered build tracker: /tmp/pip-req-tracker-fv9nweuv 2020-05-27T18:51:25,229 Created temporary directory: /tmp/pip-wheel-4thvtlzf 2020-05-27T18:51:25,245 1 location(s) to search for versions of DRAM-bio: 2020-05-27T18:51:25,245 * https://pypi.org/simple/dram-bio/ 2020-05-27T18:51:25,246 Fetching project page and analyzing links: https://pypi.org/simple/dram-bio/ 2020-05-27T18:51:25,248 Getting page https://pypi.org/simple/dram-bio/ 2020-05-27T18:51:25,252 Found index url https://pypi.org/simple 2020-05-27T18:51:25,489 Found link https://files.pythonhosted.org/packages/3d/66/40cd801e2b6753ff59ac2708747b925dfe12d081f4237ef75750b6517b12/DRAM-bio-1.0.0.tar.gz#sha256=c8758fb8cc338ad267b27de015a29d5bcb1aaa17841c115aa69290a4831d1d18 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3), version: 1.0.0 2020-05-27T18:51:25,490 Skipping link: No binaries permitted for DRAM-bio: https://files.pythonhosted.org/packages/e4/26/c5b5bbfc8cb584e67272bc9d12dfa0354d7b8868f5c50d9dcd3ecfa8cdca/DRAM_bio-1.0.0-py3-none-any.whl#sha256=2f446709a501d77d78fe8617086157ff6dbdf5fb2100afb5415bf6ea460d6ad8 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3) 2020-05-27T18:51:25,491 Found link https://files.pythonhosted.org/packages/a9/bb/dccccac98c8725a79eb18efec859972b4f47e6bb4b92f18da102c5046e08/DRAM-bio-1.0.1.tar.gz#sha256=fd4dd1dc4eeaf2c1bd936f7770f0609f4e537102d079ae03eda41bf44da8f544 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3), version: 1.0.1 2020-05-27T18:51:25,493 Found link https://files.pythonhosted.org/packages/8e/8b/52fe9817dd63b9306f53516d7415e9d04020ceecb6ed813124c69f9451e3/DRAM-bio-1.0.2.tar.gz#sha256=5872bc7cbb1cfc0c1a8a0c58aa188fb43e585e53de2f78379ad265da6629da22 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3), version: 1.0.2 2020-05-27T18:51:25,494 Found link https://files.pythonhosted.org/packages/88/4a/4e8b07aa948187435f23334b3d6d96e27c90fa854b14e6fed9727b769f8e/DRAM-bio-1.0.3.tar.gz#sha256=dcc55fe23238bd3d4e9bcacd9699a0404cd560f3c1c87e0071b21be058f24ca4 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3), version: 1.0.3 2020-05-27T18:51:25,495 Skipping link: No binaries permitted for DRAM-bio: https://files.pythonhosted.org/packages/4c/7a/e547ebbdb1abfda0cf1340c982f31819de55f8265fbc92406db85bfa53dc/DRAM_bio-1.0.3-py3-none-any.whl#sha256=7988b951adeb46506d94563f7e062af529cdde9762159cf8c2e1e57c7fb52e11 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3) 2020-05-27T18:51:25,496 Found link https://files.pythonhosted.org/packages/0b/be/2a16620f0a8f068131a5531a59e88d40de06c94ffcd2750cdf6ba83d2f16/DRAM-bio-1.0.4.tar.gz#sha256=eb9d11bc0c3f99c8062d2c8dee266c3c0e323eacea5d3778165c613fedc0e450 (from https://pypi.org/simple/dram-bio/) (requires-python:>=3), version: 1.0.4 2020-05-27T18:51:25,497 Skipping link: No binaries permitted for DRAM-bio: https://files.pythonhosted.org/packages/f6/d4/8579aa4f62f416f46c4554096e0d0849c325b242c229a95152ab49c08782/DRAM_bio-1.0.4-py3-none-any.whl#sha256=0ede66f949b730ac454f2fdb3db5395bc387daf7d0682754b511d77b0efb328d (from https://pypi.org/simple/dram-bio/) (requires-python:>=3) 2020-05-27T18:51:25,509 Given no hashes to check 1 links for project 'DRAM-bio': discarding no candidates 2020-05-27T18:51:25,510 Using version 1.0.4 (newest of versions: 1.0.4) 2020-05-27T18:51:25,517 Collecting DRAM-bio==1.0.4 2020-05-27T18:51:25,522 Created temporary directory: /tmp/pip-unpack-mvy9pleq 2020-05-27T18:51:25,749 Downloading DRAM-bio-1.0.4.tar.gz (67 kB) 2020-05-27T18:51:25,971 Added DRAM-bio==1.0.4 from https://files.pythonhosted.org/packages/0b/be/2a16620f0a8f068131a5531a59e88d40de06c94ffcd2750cdf6ba83d2f16/DRAM-bio-1.0.4.tar.gz#sha256=eb9d11bc0c3f99c8062d2c8dee266c3c0e323eacea5d3778165c613fedc0e450 to build tracker '/tmp/pip-req-tracker-fv9nweuv' 2020-05-27T18:51:25,975 Running setup.py (path:/tmp/pip-wheel-4thvtlzf/DRAM-bio/setup.py) egg_info for package DRAM-bio 2020-05-27T18:51:25,977 Created temporary directory: /tmp/pip-pip-egg-info-6oj6qggr 2020-05-27T18:51:25,978 Running command python setup.py egg_info 2020-05-27T18:51:28,255 running egg_info 2020-05-27T18:51:28,261 creating /tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info 2020-05-27T18:51:28,263 writing /tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/PKG-INFO 2020-05-27T18:51:28,270 writing requirements to /tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/requires.txt 2020-05-27T18:51:28,273 writing dependency_links to /tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/dependency_links.txt 2020-05-27T18:51:28,276 writing top-level names to /tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/top_level.txt 2020-05-27T18:51:28,280 writing manifest file '/tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/SOURCES.txt' 2020-05-27T18:51:28,653 reading manifest file '/tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/SOURCES.txt' 2020-05-27T18:51:28,662 writing manifest file '/tmp/pip-pip-egg-info-6oj6qggr/DRAM_bio.egg-info/SOURCES.txt' 2020-05-27T18:51:28,801 Source in /tmp/pip-wheel-4thvtlzf/DRAM-bio has version 1.0.4, which satisfies requirement DRAM-bio==1.0.4 from https://files.pythonhosted.org/packages/0b/be/2a16620f0a8f068131a5531a59e88d40de06c94ffcd2750cdf6ba83d2f16/DRAM-bio-1.0.4.tar.gz#sha256=eb9d11bc0c3f99c8062d2c8dee266c3c0e323eacea5d3778165c613fedc0e450 2020-05-27T18:51:28,803 Removed DRAM-bio==1.0.4 from https://files.pythonhosted.org/packages/0b/be/2a16620f0a8f068131a5531a59e88d40de06c94ffcd2750cdf6ba83d2f16/DRAM-bio-1.0.4.tar.gz#sha256=eb9d11bc0c3f99c8062d2c8dee266c3c0e323eacea5d3778165c613fedc0e450 from build tracker '/tmp/pip-req-tracker-fv9nweuv' 2020-05-27T18:51:28,809 Building wheels for collected packages: DRAM-bio 2020-05-27T18:51:28,818 Created temporary directory: /tmp/pip-wheel-cluzcq63 2020-05-27T18:51:28,819 Building wheel for DRAM-bio (setup.py): started 2020-05-27T18:51:28,820 Destination directory: /tmp/pip-wheel-cluzcq63 2020-05-27T18:51:28,820 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4thvtlzf/DRAM-bio/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4thvtlzf/DRAM-bio/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cluzcq63 2020-05-27T18:51:31,108 running bdist_wheel 2020-05-27T18:51:31,124 running build 2020-05-27T18:51:31,124 running build_py 2020-05-27T18:51:31,465 creating build 2020-05-27T18:51:31,465 creating build/lib 2020-05-27T18:51:31,467 creating build/lib/tests 2020-05-27T18:51:31,470 copying tests/test_summarize_vgfs.py -> build/lib/tests 2020-05-27T18:51:31,475 copying tests/test_annotate_bins.py -> build/lib/tests 2020-05-27T18:51:31,484 copying tests/test_database_handler.py -> build/lib/tests 2020-05-27T18:51:31,490 copying tests/test_database_processing.py -> build/lib/tests 2020-05-27T18:51:31,497 copying tests/test_summarize_genomes.py -> build/lib/tests 2020-05-27T18:51:31,505 copying tests/test_annotate_vgfs.py -> build/lib/tests 2020-05-27T18:51:31,512 copying tests/test_utils.py -> build/lib/tests 2020-05-27T18:51:31,517 copying tests/__init__.py -> build/lib/tests 2020-05-27T18:51:31,523 creating build/lib/mag_annotator 2020-05-27T18:51:31,526 copying mag_annotator/database_processing.py -> build/lib/mag_annotator 2020-05-27T18:51:31,533 copying mag_annotator/annotate_vgfs.py -> build/lib/mag_annotator 2020-05-27T18:51:31,541 copying mag_annotator/database_setup.py -> build/lib/mag_annotator 2020-05-27T18:51:31,547 copying mag_annotator/summarize_vgfs.py -> build/lib/mag_annotator 2020-05-27T18:51:31,554 copying mag_annotator/pull_sequences.py -> build/lib/mag_annotator 2020-05-27T18:51:31,561 copying mag_annotator/database_handler.py -> build/lib/mag_annotator 2020-05-27T18:51:31,565 copying mag_annotator/utils.py -> build/lib/mag_annotator 2020-05-27T18:51:31,570 copying mag_annotator/annotate_bins.py -> build/lib/mag_annotator 2020-05-27T18:51:31,580 copying mag_annotator/__init__.py -> build/lib/mag_annotator 2020-05-27T18:51:31,585 copying mag_annotator/summarize_genomes.py -> build/lib/mag_annotator 2020-05-27T18:51:31,595 copying mag_annotator/CONFIG -> build/lib/mag_annotator 2020-05-27T18:51:31,605 running build_scripts 2020-05-27T18:51:31,606 creating build/scripts-3.5 2020-05-27T18:51:31,609 copying and adjusting scripts/DRAM.py -> build/scripts-3.5 2020-05-27T18:51:31,614 copying and adjusting scripts/DRAM-v.py -> build/scripts-3.5 2020-05-27T18:51:31,619 copying and adjusting scripts/DRAM-setup.py -> build/scripts-3.5 2020-05-27T18:51:31,623 changing mode of build/scripts-3.5/DRAM.py from 644 to 755 2020-05-27T18:51:31,624 changing mode of build/scripts-3.5/DRAM-v.py from 644 to 755 2020-05-27T18:51:31,625 changing mode of build/scripts-3.5/DRAM-setup.py from 644 to 755 2020-05-27T18:51:31,632 installing to build/bdist.linux-armv7l/wheel 2020-05-27T18:51:31,632 running install 2020-05-27T18:51:31,634 running install_lib 2020-05-27T18:51:31,642 creating build/bdist.linux-armv7l 2020-05-27T18:51:31,643 creating build/bdist.linux-armv7l/wheel 2020-05-27T18:51:31,647 creating build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,649 copying build/lib/tests/test_summarize_vgfs.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,655 copying build/lib/tests/test_annotate_bins.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,663 copying build/lib/tests/test_database_handler.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,669 copying build/lib/tests/test_database_processing.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,676 copying build/lib/tests/test_summarize_genomes.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,683 copying build/lib/tests/test_annotate_vgfs.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,690 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,696 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2020-05-27T18:51:31,702 creating build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,704 copying build/lib/mag_annotator/database_processing.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,712 copying build/lib/mag_annotator/annotate_vgfs.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,718 copying build/lib/mag_annotator/database_setup.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,723 copying build/lib/mag_annotator/summarize_vgfs.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,730 copying build/lib/mag_annotator/pull_sequences.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,737 copying build/lib/mag_annotator/database_handler.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,742 copying build/lib/mag_annotator/CONFIG -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,748 copying build/lib/mag_annotator/utils.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,754 copying build/lib/mag_annotator/annotate_bins.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,765 copying build/lib/mag_annotator/__init__.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,771 copying build/lib/mag_annotator/summarize_genomes.py -> build/bdist.linux-armv7l/wheel/mag_annotator 2020-05-27T18:51:31,780 running install_egg_info 2020-05-27T18:51:31,827 running egg_info 2020-05-27T18:51:31,829 writing DRAM_bio.egg-info/PKG-INFO 2020-05-27T18:51:31,834 writing top-level names to DRAM_bio.egg-info/top_level.txt 2020-05-27T18:51:31,836 writing dependency_links to DRAM_bio.egg-info/dependency_links.txt 2020-05-27T18:51:31,839 writing requirements to DRAM_bio.egg-info/requires.txt 2020-05-27T18:51:31,852 reading manifest file 'DRAM_bio.egg-info/SOURCES.txt' 2020-05-27T18:51:31,864 writing manifest file 'DRAM_bio.egg-info/SOURCES.txt' 2020-05-27T18:51:31,867 Copying DRAM_bio.egg-info to build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4-py3.5.egg-info 2020-05-27T18:51:31,893 running install_scripts 2020-05-27T18:51:32,028 creating build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data 2020-05-27T18:51:32,029 creating build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts 2020-05-27T18:51:32,032 copying build/scripts-3.5/DRAM.py -> build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts 2020-05-27T18:51:32,037 copying build/scripts-3.5/DRAM-setup.py -> build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts 2020-05-27T18:51:32,043 copying build/scripts-3.5/DRAM-v.py -> build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts 2020-05-27T18:51:32,048 changing mode of build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts/DRAM.py to 755 2020-05-27T18:51:32,049 changing mode of build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts/DRAM-setup.py to 755 2020-05-27T18:51:32,049 changing mode of build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.data/scripts/DRAM-v.py to 755 2020-05-27T18:51:32,117 creating build/bdist.linux-armv7l/wheel/DRAM_bio-1.0.4.dist-info/WHEEL 2020-05-27T18:51:32,457 Building wheel for DRAM-bio (setup.py): finished with status 'done' 2020-05-27T18:51:32,462 Created wheel for DRAM-bio: filename=DRAM_bio-1.0.4-py3-none-any.whl size=75204 sha256=e02c662a0f39f7ebc1ebbb8fdc31dd6f818101069c981e8d4da54bd4b6c691f5 2020-05-27T18:51:32,463 Stored in directory: /tmp/pip-ephem-wheel-cache-xe00myx9/wheels/f9/83/9e/5438ec8325266a48cd65cb19ba7f2c3876329a874064f2c21c 2020-05-27T18:51:32,467 Successfully built DRAM-bio 2020-05-27T18:51:32,488 Removed build tracker: '/tmp/pip-req-tracker-fv9nweuv'