2020-05-31T23:07:43,957 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1f8x_z5
2020-05-31T23:07:43,961 Created temporary directory: /tmp/pip-req-tracker-uto1cckr
2020-05-31T23:07:43,962 Initialized build tracking at /tmp/pip-req-tracker-uto1cckr
2020-05-31T23:07:43,963 Created build tracker: /tmp/pip-req-tracker-uto1cckr
2020-05-31T23:07:43,963 Entered build tracker: /tmp/pip-req-tracker-uto1cckr
2020-05-31T23:07:43,964 Created temporary directory: /tmp/pip-wheel-3wmao97_
2020-05-31T23:07:43,982 1 location(s) to search for versions of hapROH:
2020-05-31T23:07:43,982 * https://pypi.org/simple/haproh/
2020-05-31T23:07:43,982 Fetching project page and analyzing links: https://pypi.org/simple/haproh/
2020-05-31T23:07:43,983 Getting page https://pypi.org/simple/haproh/
2020-05-31T23:07:43,986 Found index url https://pypi.org/simple
2020-05-31T23:07:44,204   Found link https://files.pythonhosted.org/packages/bd/c5/214967ada45e9b2ade103fc0fed946d8682e9afff4edbf1c8226313ff461/hapROH-0.1a1.tar.gz#sha256=c8033a6346cac71b563da5a8c4d1a95e1ec944dd660fcf22305646cbab02cb0c (from https://pypi.org/simple/haproh/) (requires-python:>=3.6), version: 0.1a1
2020-05-31T23:07:44,212 Given no hashes to check 1 links for project 'hapROH': discarding no candidates
2020-05-31T23:07:44,213 Using version 0.1a1 (newest of versions: 0.1a1)
2020-05-31T23:07:44,218 Collecting hapROH==0.1a1
2020-05-31T23:07:44,222   Created temporary directory: /tmp/pip-unpack-jb36aji8
2020-05-31T23:07:44,441   Downloading hapROH-0.1a1.tar.gz (1.2 MB)
2020-05-31T23:07:46,030   Added hapROH==0.1a1 from https://files.pythonhosted.org/packages/bd/c5/214967ada45e9b2ade103fc0fed946d8682e9afff4edbf1c8226313ff461/hapROH-0.1a1.tar.gz#sha256=c8033a6346cac71b563da5a8c4d1a95e1ec944dd660fcf22305646cbab02cb0c to build tracker '/tmp/pip-req-tracker-uto1cckr'
2020-05-31T23:07:46,033     Running setup.py (path:/tmp/pip-wheel-3wmao97_/hapROH/setup.py) egg_info for package hapROH
2020-05-31T23:07:46,035     Created temporary directory: /tmp/pip-pip-egg-info-_9dncktx
2020-05-31T23:07:46,036     Running command python setup.py egg_info
2020-05-31T23:07:57,708     Compiling hapsburg/cfunc.pyx because it depends on /usr/local/lib/python3.7/dist-packages/Cython/Includes/libc/math.pxd.
2020-05-31T23:07:57,710     [1/1] Cythonizing hapsburg/cfunc.pyx
2020-05-31T23:07:58,016     running egg_info
2020-05-31T23:07:58,021     creating /tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info
2020-05-31T23:07:58,024     writing /tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/PKG-INFO
2020-05-31T23:07:58,029     writing dependency_links to /tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/dependency_links.txt
2020-05-31T23:07:58,034     writing top-level names to /tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/top_level.txt
2020-05-31T23:07:58,038     writing manifest file '/tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/SOURCES.txt'
2020-05-31T23:07:58,616     reading manifest file '/tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/SOURCES.txt'
2020-05-31T23:07:58,620     reading manifest template 'MANIFEST.in'
2020-05-31T23:07:58,675     writing manifest file '/tmp/pip-pip-egg-info-_9dncktx/hapROH.egg-info/SOURCES.txt'
2020-05-31T23:07:59,356   Source in /tmp/pip-wheel-3wmao97_/hapROH has version 0.1a1, which satisfies requirement hapROH==0.1a1 from https://files.pythonhosted.org/packages/bd/c5/214967ada45e9b2ade103fc0fed946d8682e9afff4edbf1c8226313ff461/hapROH-0.1a1.tar.gz#sha256=c8033a6346cac71b563da5a8c4d1a95e1ec944dd660fcf22305646cbab02cb0c
2020-05-31T23:07:59,358   Removed hapROH==0.1a1 from https://files.pythonhosted.org/packages/bd/c5/214967ada45e9b2ade103fc0fed946d8682e9afff4edbf1c8226313ff461/hapROH-0.1a1.tar.gz#sha256=c8033a6346cac71b563da5a8c4d1a95e1ec944dd660fcf22305646cbab02cb0c from build tracker '/tmp/pip-req-tracker-uto1cckr'
2020-05-31T23:07:59,362 Building wheels for collected packages: hapROH
2020-05-31T23:07:59,372   Created temporary directory: /tmp/pip-wheel-by25ruf3
2020-05-31T23:07:59,372   Building wheel for hapROH (setup.py): started
2020-05-31T23:07:59,373   Destination directory: /tmp/pip-wheel-by25ruf3
2020-05-31T23:07:59,373   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3wmao97_/hapROH/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3wmao97_/hapROH/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-by25ruf3
2020-05-31T23:08:02,615   running bdist_wheel
2020-05-31T23:08:02,625   running build
2020-05-31T23:08:02,625   running build_py
2020-05-31T23:08:02,897   creating build
2020-05-31T23:08:02,898   creating build/lib.linux-armv7l-3.7
2020-05-31T23:08:02,899   creating build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,902   copying hapsburg/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,906   copying hapsburg/transitions.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,910   copying hapsburg/emissions.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,915   copying hapsburg/simData.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,924   copying hapsburg/hmm_inference.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,931   copying hapsburg/postprocessing.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,937   copying hapsburg/preprocessing.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,945   copying hapsburg/func.py -> build/lib.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:02,953   creating build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,956   copying hapsburg/PackagesSupport/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,961   copying hapsburg/PackagesSupport/hapsburg_run.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,967   copying hapsburg/PackagesSupport/roh_expectations.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,973   copying hapsburg/PackagesSupport/pp_individual_roh_csvs.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,980   copying hapsburg/PackagesSupport/fit_ne.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,987   copying hapsburg/PackagesSupport/sqrt_scale.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport
2020-05-31T23:08:02,995   creating build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:02,997   copying hapsburg/figures/plot_timelines.py -> build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:03,005   copying hapsburg/figures/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:03,010   copying hapsburg/figures/plot_posterior.py -> build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:03,016   copying hapsburg/figures/plot_individual_roh.py -> build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:03,024   copying hapsburg/figures/plot_bars.py -> build/lib.linux-armv7l-3.7/hapsburg/figures
2020-05-31T23:08:03,032   creating build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/h5_python
2020-05-31T23:08:03,034   copying hapsburg/PackagesSupport/h5_python/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/h5_python
2020-05-31T23:08:03,040   copying hapsburg/PackagesSupport/h5_python/h5_functions.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/h5_python
2020-05-31T23:08:03,048   creating build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:08:03,050   copying hapsburg/PackagesSupport/parallel_runs/helper_functions.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:08:03,057   copying hapsburg/PackagesSupport/parallel_runs/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:08:03,063   creating build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:08:03,065   copying hapsburg/PackagesSupport/loadEigenstrat/__init__.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:08:03,069   copying hapsburg/PackagesSupport/loadEigenstrat/saveHDF5.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:08:03,073   copying hapsburg/PackagesSupport/loadEigenstrat/loadEigenstrat.py -> build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:08:03,088   running build_ext
2020-05-31T23:08:03,390   building 'hapsburg.cfunc' extension
2020-05-31T23:08:03,391   creating build/temp.linux-armv7l-3.7
2020-05-31T23:08:03,391   creating build/temp.linux-armv7l-3.7/hapsburg
2020-05-31T23:08:03,393   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c hapsburg/cfunc.c -o build/temp.linux-armv7l-3.7/hapsburg/cfunc.o
2020-05-31T23:09:00,097   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/hapsburg/cfunc.o -o build/lib.linux-armv7l-3.7/hapsburg/cfunc.cpython-37m-arm-linux-gnueabihf.so
2020-05-31T23:09:00,527   installing to build/bdist.linux-armv7l/wheel
2020-05-31T23:09:00,528   running install
2020-05-31T23:09:00,531   running install_lib
2020-05-31T23:09:00,542   creating build/bdist.linux-armv7l
2020-05-31T23:09:00,542   creating build/bdist.linux-armv7l/wheel
2020-05-31T23:09:00,546   creating build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,549   copying build/lib.linux-armv7l-3.7/hapsburg/cfunc.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,669   copying build/lib.linux-armv7l-3.7/hapsburg/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,676   creating build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,679   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,686   creating build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/h5_python
2020-05-31T23:09:00,689   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/h5_python/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/h5_python
2020-05-31T23:09:00,695   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/h5_python/h5_functions.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/h5_python
2020-05-31T23:09:00,701   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/hapsburg_run.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,708   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/roh_expectations.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,717   creating build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:09:00,719   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/parallel_runs/helper_functions.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:09:00,726   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/parallel_runs/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/parallel_runs
2020-05-31T23:09:00,732   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/pp_individual_roh_csvs.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,739   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/fit_ne.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,748   creating build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:09:00,750   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:09:00,756   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat/saveHDF5.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:09:00,762   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/loadEigenstrat/loadEigenstrat.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport/loadEigenstrat
2020-05-31T23:09:00,769   copying build/lib.linux-armv7l-3.7/hapsburg/PackagesSupport/sqrt_scale.py -> build/bdist.linux-armv7l/wheel/hapsburg/PackagesSupport
2020-05-31T23:09:00,775   copying build/lib.linux-armv7l-3.7/hapsburg/transitions.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,782   creating build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,784   copying build/lib.linux-armv7l-3.7/hapsburg/figures/plot_timelines.py -> build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,792   copying build/lib.linux-armv7l-3.7/hapsburg/figures/__init__.py -> build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,798   copying build/lib.linux-armv7l-3.7/hapsburg/figures/plot_posterior.py -> build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,805   copying build/lib.linux-armv7l-3.7/hapsburg/figures/plot_individual_roh.py -> build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,812   copying build/lib.linux-armv7l-3.7/hapsburg/figures/plot_bars.py -> build/bdist.linux-armv7l/wheel/hapsburg/figures
2020-05-31T23:09:00,818   copying build/lib.linux-armv7l-3.7/hapsburg/emissions.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,825   copying build/lib.linux-armv7l-3.7/hapsburg/simData.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,832   copying build/lib.linux-armv7l-3.7/hapsburg/hmm_inference.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,840   copying build/lib.linux-armv7l-3.7/hapsburg/postprocessing.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,847   copying build/lib.linux-armv7l-3.7/hapsburg/preprocessing.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,854   copying build/lib.linux-armv7l-3.7/hapsburg/func.py -> build/bdist.linux-armv7l/wheel/hapsburg
2020-05-31T23:09:00,860   running install_egg_info
2020-05-31T23:09:00,915   running egg_info
2020-05-31T23:09:00,917   writing hapROH.egg-info/PKG-INFO
2020-05-31T23:09:00,922   writing dependency_links to hapROH.egg-info/dependency_links.txt
2020-05-31T23:09:00,926   writing top-level names to hapROH.egg-info/top_level.txt
2020-05-31T23:09:00,954   reading manifest file 'hapROH.egg-info/SOURCES.txt'
2020-05-31T23:09:01,003   reading manifest template 'MANIFEST.in'
2020-05-31T23:09:01,087   writing manifest file 'hapROH.egg-info/SOURCES.txt'
2020-05-31T23:09:01,091   Copying hapROH.egg-info to build/bdist.linux-armv7l/wheel/hapROH-0.1a1-py3.7.egg-info
2020-05-31T23:09:01,113   running install_scripts
2020-05-31T23:09:01,198   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-05-31T23:09:01,217   creating build/bdist.linux-armv7l/wheel/hapROH-0.1a1.dist-info/WHEEL
2020-05-31T23:09:01,224   creating '/tmp/pip-wheel-by25ruf3/hapROH-0.1a1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-05-31T23:09:01,233   adding 'hapsburg/__init__.py'
2020-05-31T23:09:01,672   adding 'hapsburg/cfunc.cpython-37m-arm-linux-gnueabihf.so'
2020-05-31T23:09:01,691   adding 'hapsburg/emissions.py'
2020-05-31T23:09:01,694   adding 'hapsburg/func.py'
2020-05-31T23:09:01,699   adding 'hapsburg/hmm_inference.py'
2020-05-31T23:09:01,703   adding 'hapsburg/postprocessing.py'
2020-05-31T23:09:01,710   adding 'hapsburg/preprocessing.py'
2020-05-31T23:09:01,715   adding 'hapsburg/simData.py'
2020-05-31T23:09:01,718   adding 'hapsburg/transitions.py'
2020-05-31T23:09:01,721   adding 'hapsburg/PackagesSupport/__init__.py'
2020-05-31T23:09:01,726   adding 'hapsburg/PackagesSupport/fit_ne.py'
2020-05-31T23:09:01,730   adding 'hapsburg/PackagesSupport/hapsburg_run.py'
2020-05-31T23:09:01,734   adding 'hapsburg/PackagesSupport/pp_individual_roh_csvs.py'
2020-05-31T23:09:01,737   adding 'hapsburg/PackagesSupport/roh_expectations.py'
2020-05-31T23:09:01,740   adding 'hapsburg/PackagesSupport/sqrt_scale.py'
2020-05-31T23:09:01,744   adding 'hapsburg/PackagesSupport/h5_python/__init__.py'
2020-05-31T23:09:01,747   adding 'hapsburg/PackagesSupport/h5_python/h5_functions.py'
2020-05-31T23:09:01,751   adding 'hapsburg/PackagesSupport/loadEigenstrat/__init__.py'
2020-05-31T23:09:01,754   adding 'hapsburg/PackagesSupport/loadEigenstrat/loadEigenstrat.py'
2020-05-31T23:09:01,757   adding 'hapsburg/PackagesSupport/loadEigenstrat/saveHDF5.py'
2020-05-31T23:09:01,761   adding 'hapsburg/PackagesSupport/parallel_runs/__init__.py'
2020-05-31T23:09:01,764   adding 'hapsburg/PackagesSupport/parallel_runs/helper_functions.py'
2020-05-31T23:09:01,768   adding 'hapsburg/figures/__init__.py'
2020-05-31T23:09:01,772   adding 'hapsburg/figures/plot_bars.py'
2020-05-31T23:09:01,777   adding 'hapsburg/figures/plot_individual_roh.py'
2020-05-31T23:09:01,781   adding 'hapsburg/figures/plot_posterior.py'
2020-05-31T23:09:01,786   adding 'hapsburg/figures/plot_timelines.py'
2020-05-31T23:09:01,808   adding 'hapROH-0.1a1.dist-info/LICENSE'
2020-05-31T23:09:01,812   adding 'hapROH-0.1a1.dist-info/METADATA'
2020-05-31T23:09:01,814   adding 'hapROH-0.1a1.dist-info/WHEEL'
2020-05-31T23:09:01,816   adding 'hapROH-0.1a1.dist-info/top_level.txt'
2020-05-31T23:09:01,818   adding 'hapROH-0.1a1.dist-info/RECORD'
2020-05-31T23:09:01,869   removing build/bdist.linux-armv7l/wheel
2020-05-31T23:09:02,182   Building wheel for hapROH (setup.py): finished with status 'done'
2020-05-31T23:09:02,196   Created wheel for hapROH: filename=hapROH-0.1a1-cp37-cp37m-linux_armv7l.whl size=552432 sha256=a01b342f9e99fc9e0ec761037b2d1fc367d17e87513c7eb876029bdd7e054ac7
2020-05-31T23:09:02,197   Stored in directory: /tmp/pip-ephem-wheel-cache-y1f8x_z5/wheels/8e/8e/f8/a2fd38ea95e04a66599230b0b0d99eeffb5f7003da5d2e075b
2020-05-31T23:09:02,201 Successfully built hapROH
2020-05-31T23:09:02,303 Removed build tracker: '/tmp/pip-req-tracker-uto1cckr'