2020-06-04T04:05:04,983 Created temporary directory: /tmp/pip-ephem-wheel-cache-mzbyy2vl
2020-06-04T04:05:04,988 Created temporary directory: /tmp/pip-req-tracker-syr3tdjj
2020-06-04T04:05:04,988 Initialized build tracking at /tmp/pip-req-tracker-syr3tdjj
2020-06-04T04:05:04,989 Created build tracker: /tmp/pip-req-tracker-syr3tdjj
2020-06-04T04:05:04,989 Entered build tracker: /tmp/pip-req-tracker-syr3tdjj
2020-06-04T04:05:04,991 Created temporary directory: /tmp/pip-wheel-j19c_t11
2020-06-04T04:05:05,008 1 location(s) to search for versions of scidat:
2020-06-04T04:05:05,008 * https://pypi.org/simple/scidat/
2020-06-04T04:05:05,008 Fetching project page and analyzing links: https://pypi.org/simple/scidat/
2020-06-04T04:05:05,009 Getting page https://pypi.org/simple/scidat/
2020-06-04T04:05:05,011 Found index url https://pypi.org/simple
2020-06-04T04:05:05,212   Skipping link: No binaries permitted for scidat: https://files.pythonhosted.org/packages/88/a2/6673071adf1204853d0ff89ae77c09a70aca3e639638ca43c0dac8e835e6/scidat-1.0.0-py3-none-any.whl#sha256=4e04f97c87a865de9844300c83997a3864290ec6472d37fac86f46ab14866201 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6)
2020-06-04T04:05:05,213   Found link https://files.pythonhosted.org/packages/b0/8f/d9ae0b8645d73be8c1aac28bd29acbbfd427e7e5eeeb9d8949429c163c50/scidat-1.0.0.tar.gz#sha256=b559e32c757b1c3c074243b966c33dce767e8115f3cec7d3e199f4997e202350 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6), version: 1.0.0
2020-06-04T04:05:05,214   Skipping link: No binaries permitted for scidat: https://files.pythonhosted.org/packages/6a/26/3d24569cd6225b4ff02b8111cffe59ff95b4ba4a47019b18c22833ed39f8/scidat-1.0.1-py3-none-any.whl#sha256=ea425f3a1ec512d3bb01430ee27dcac1597c15cf7afcc76b28de6ef041fdaf4f (from https://pypi.org/simple/scidat/) (requires-python:>=3.6)
2020-06-04T04:05:05,215   Found link https://files.pythonhosted.org/packages/18/88/aed02e34944484da746677f0059fb1f48693f189d2e1c74cb1fc70c2ff94/scidat-1.0.1.tar.gz#sha256=120f6cc0f1dd9df0a69fc206e697ed43712d3509a94a5551f949456e287015fc (from https://pypi.org/simple/scidat/) (requires-python:>=3.6), version: 1.0.1
2020-06-04T04:05:05,222 Given no hashes to check 1 links for project 'scidat': discarding no candidates
2020-06-04T04:05:05,224 Using version 1.0.1 (newest of versions: 1.0.1)
2020-06-04T04:05:05,229 Collecting scidat==1.0.1
2020-06-04T04:05:05,233   Created temporary directory: /tmp/pip-unpack-dy5c54dv
2020-06-04T04:05:06,061   Downloading scidat-1.0.1.tar.gz (18.2 MB)
2020-06-04T04:05:11,992   Added scidat==1.0.1 from https://files.pythonhosted.org/packages/18/88/aed02e34944484da746677f0059fb1f48693f189d2e1c74cb1fc70c2ff94/scidat-1.0.1.tar.gz#sha256=120f6cc0f1dd9df0a69fc206e697ed43712d3509a94a5551f949456e287015fc to build tracker '/tmp/pip-req-tracker-syr3tdjj'
2020-06-04T04:05:11,995     Running setup.py (path:/tmp/pip-wheel-j19c_t11/scidat/setup.py) egg_info for package scidat
2020-06-04T04:05:11,997     Created temporary directory: /tmp/pip-pip-egg-info-rel432ey
2020-06-04T04:05:11,998     Running command python setup.py egg_info
2020-06-04T04:05:14,017     running egg_info
2020-06-04T04:05:14,021     creating /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info
2020-06-04T04:05:14,024     writing /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/PKG-INFO
2020-06-04T04:05:14,030     writing dependency_links to /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/dependency_links.txt
2020-06-04T04:05:14,034     writing entry points to /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/entry_points.txt
2020-06-04T04:05:14,036     writing requirements to /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/requires.txt
2020-06-04T04:05:14,038     writing top-level names to /tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/top_level.txt
2020-06-04T04:05:14,043     writing manifest file '/tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/SOURCES.txt'
2020-06-04T04:05:14,338     reading manifest file '/tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/SOURCES.txt'
2020-06-04T04:05:14,346     writing manifest file '/tmp/pip-pip-egg-info-rel432ey/scidat.egg-info/SOURCES.txt'
2020-06-04T04:05:14,468   Source in /tmp/pip-wheel-j19c_t11/scidat has version 1.0.1, which satisfies requirement scidat==1.0.1 from https://files.pythonhosted.org/packages/18/88/aed02e34944484da746677f0059fb1f48693f189d2e1c74cb1fc70c2ff94/scidat-1.0.1.tar.gz#sha256=120f6cc0f1dd9df0a69fc206e697ed43712d3509a94a5551f949456e287015fc
2020-06-04T04:05:14,470   Removed scidat==1.0.1 from https://files.pythonhosted.org/packages/18/88/aed02e34944484da746677f0059fb1f48693f189d2e1c74cb1fc70c2ff94/scidat-1.0.1.tar.gz#sha256=120f6cc0f1dd9df0a69fc206e697ed43712d3509a94a5551f949456e287015fc from build tracker '/tmp/pip-req-tracker-syr3tdjj'
2020-06-04T04:05:14,476 Building wheels for collected packages: scidat
2020-06-04T04:05:14,486   Created temporary directory: /tmp/pip-wheel-67w_5kfq
2020-06-04T04:05:14,487   Building wheel for scidat (setup.py): started
2020-06-04T04:05:14,487   Destination directory: /tmp/pip-wheel-67w_5kfq
2020-06-04T04:05:14,488   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-j19c_t11/scidat/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-j19c_t11/scidat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-67w_5kfq
2020-06-04T04:05:16,505   running bdist_wheel
2020-06-04T04:05:16,519   running build
2020-06-04T04:05:16,520   running build_py
2020-06-04T04:05:16,809   creating build
2020-06-04T04:05:16,810   creating build/lib
2020-06-04T04:05:16,812   creating build/lib/scidat
2020-06-04T04:05:16,815   copying scidat/__init__.py -> build/lib/scidat
2020-06-04T04:05:16,820   copying scidat/__main__.py -> build/lib/scidat
2020-06-04T04:05:16,824   copying scidat/api.py -> build/lib/scidat
2020-06-04T04:05:16,830   copying scidat/annotate.py -> build/lib/scidat
2020-06-04T04:05:16,837   copying scidat/download.py -> build/lib/scidat
2020-06-04T04:05:16,856   installing to build/bdist.linux-armv7l/wheel
2020-06-04T04:05:16,856   running install
2020-06-04T04:05:16,858   running install_lib
2020-06-04T04:05:16,866   creating build/bdist.linux-armv7l
2020-06-04T04:05:16,867   creating build/bdist.linux-armv7l/wheel
2020-06-04T04:05:16,871   creating build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,874   copying build/lib/scidat/__init__.py -> build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,879   copying build/lib/scidat/__main__.py -> build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,884   copying build/lib/scidat/api.py -> build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,891   copying build/lib/scidat/annotate.py -> build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,897   copying build/lib/scidat/download.py -> build/bdist.linux-armv7l/wheel/scidat
2020-06-04T04:05:16,904   running install_data
2020-06-04T04:05:16,913   creating build/bdist.linux-armv7l/wheel/scidat-1.0.1.data
2020-06-04T04:05:16,915   creating build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data
2020-06-04T04:05:16,919   copying LICENSE -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,927   copying tests/data/d3f73c0f-d518-4e91-b038-a4360495ee27.htseq.counts.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,932   copying tests/data/jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5989-01A-11D-1670-05.gdc_hg38.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,938   copying tests/data/clinical.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,945   copying tests/data/sample_sheet.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,951   copying tests/data/mutation_TCGA-KN-8422_20200410.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,957   copying tests/data/manifest.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:16,962   copying tests/data/gdc-client -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:18,634   copying tests/data/mutation_TCGA-A3-3308_20200410.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.1.data/data/
2020-06-04T04:05:18,638   running install_egg_info
2020-06-04T04:05:18,675   running egg_info
2020-06-04T04:05:18,677   writing scidat.egg-info/PKG-INFO
2020-06-04T04:05:18,682   writing dependency_links to scidat.egg-info/dependency_links.txt
2020-06-04T04:05:18,686   writing entry points to scidat.egg-info/entry_points.txt
2020-06-04T04:05:18,689   writing requirements to scidat.egg-info/requires.txt
2020-06-04T04:05:18,691   writing top-level names to scidat.egg-info/top_level.txt
2020-06-04T04:05:18,701   reading manifest file 'scidat.egg-info/SOURCES.txt'
2020-06-04T04:05:18,711   writing manifest file 'scidat.egg-info/SOURCES.txt'
2020-06-04T04:05:18,714   Copying scidat.egg-info to build/bdist.linux-armv7l/wheel/scidat-1.0.1-py3.7.egg-info
2020-06-04T04:05:18,750   running install_scripts
2020-06-04T04:05:18,910   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-06-04T04:05:18,926   creating build/bdist.linux-armv7l/wheel/scidat-1.0.1.dist-info/WHEEL
2020-06-04T04:05:18,933   creating '/tmp/pip-wheel-67w_5kfq/scidat-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-06-04T04:05:18,940   adding 'scidat/__init__.py'
2020-06-04T04:05:18,944   adding 'scidat/__main__.py'
2020-06-04T04:05:18,950   adding 'scidat/annotate.py'
2020-06-04T04:05:18,955   adding 'scidat/api.py'
2020-06-04T04:05:18,959   adding 'scidat/download.py'
2020-06-04T04:05:18,972   adding 'scidat-1.0.1.data/data/LICENSE'
2020-06-04T04:05:18,976   adding 'scidat-1.0.1.data/data/clinical.txt'
2020-06-04T04:05:18,978   adding 'scidat-1.0.1.data/data/d3f73c0f-d518-4e91-b038-a4360495ee27.htseq.counts.tsv'
2020-06-04T04:05:22,394   adding 'scidat-1.0.1.data/data/gdc-client'
2020-06-04T04:05:22,616   adding 'scidat-1.0.1.data/data/jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5989-01A-11D-1670-05.gdc_hg38.txt'
2020-06-04T04:05:22,620   adding 'scidat-1.0.1.data/data/manifest.tsv'
2020-06-04T04:05:22,623   adding 'scidat-1.0.1.data/data/mutation_TCGA-A3-3308_20200410.tsv'
2020-06-04T04:05:22,626   adding 'scidat-1.0.1.data/data/mutation_TCGA-KN-8422_20200410.tsv'
2020-06-04T04:05:22,629   adding 'scidat-1.0.1.data/data/sample_sheet.txt'
2020-06-04T04:05:22,642   adding 'scidat-1.0.1.dist-info/LICENSE'
2020-06-04T04:05:22,645   adding 'scidat-1.0.1.dist-info/METADATA'
2020-06-04T04:05:22,647   adding 'scidat-1.0.1.dist-info/WHEEL'
2020-06-04T04:05:22,649   adding 'scidat-1.0.1.dist-info/entry_points.txt'
2020-06-04T04:05:22,651   adding 'scidat-1.0.1.dist-info/top_level.txt'
2020-06-04T04:05:22,652   adding 'scidat-1.0.1.dist-info/RECORD'
2020-06-04T04:05:24,231   removing build/bdist.linux-armv7l/wheel
2020-06-04T04:05:24,396   Building wheel for scidat (setup.py): finished with status 'done'
2020-06-04T04:05:24,659   Created wheel for scidat: filename=scidat-1.0.1-py3-none-any.whl size=18174409 sha256=35754f6e4c4c4573104f78531007860de634fe632c871d8e04590304434cc3a1
2020-06-04T04:05:24,659   Stored in directory: /tmp/pip-ephem-wheel-cache-mzbyy2vl/wheels/79/56/a2/8e7dcd6a454d59de5d37a3b3d321383e72f15c67b4ee78b939
2020-06-04T04:05:24,667 Successfully built scidat
2020-06-04T04:05:27,825 Removed build tracker: '/tmp/pip-req-tracker-syr3tdjj'