2020-06-05T14:38:26,145 Created temporary directory: /tmp/pip-ephem-wheel-cache-vh2sdhmm
2020-06-05T14:38:26,150 Created temporary directory: /tmp/pip-req-tracker-hvhj9s_h
2020-06-05T14:38:26,151 Initialized build tracking at /tmp/pip-req-tracker-hvhj9s_h
2020-06-05T14:38:26,153 Created build tracker: /tmp/pip-req-tracker-hvhj9s_h
2020-06-05T14:38:26,153 Entered build tracker: /tmp/pip-req-tracker-hvhj9s_h
2020-06-05T14:38:26,155 Created temporary directory: /tmp/pip-wheel-0yzjj_hp
2020-06-05T14:38:26,171 1 location(s) to search for versions of pomoxis:
2020-06-05T14:38:26,171 * https://pypi.org/simple/pomoxis/
2020-06-05T14:38:26,172 Fetching project page and analyzing links: https://pypi.org/simple/pomoxis/
2020-06-05T14:38:26,174 Getting page https://pypi.org/simple/pomoxis/
2020-06-05T14:38:26,178 Found index url https://pypi.org/simple
2020-06-05T14:38:26,419   Found link https://files.pythonhosted.org/packages/c0/59/a56134534e8982b057c383eb347cf395305c28c3fcd47e42ca3866401212/pomoxis-0.2.2a1.tar.gz#sha256=62f5121020ce00f056714240d50d580d0c23a64d502a80ea529d431655367e88 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.2a1
2020-06-05T14:38:26,421   Found link https://files.pythonhosted.org/packages/7f/90/ed673752a756a3477dcc242f938c46aa7fabd7e9a061438a8606c3a99e6e/pomoxis-0.2.2a2.tar.gz#sha256=cfed0307424929a9bb1e44f6acd2e1d8b5741532581ae38ce510d565979247c6 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.2a2
2020-06-05T14:38:26,423   Found link https://files.pythonhosted.org/packages/45/15/4b49595826cc4975e73952c5416a72c994477a5e7b099976577d88f105df/pomoxis-0.2.2.tar.gz#sha256=4001024e7c2b200e4924c2924f3c423e3f7464b51501619b3c310f51b5120df9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.2
2020-06-05T14:38:26,425   Found link https://files.pythonhosted.org/packages/79/63/59892ab3f851f6088ba6c5f97fc1e871cbf6ce6e310b8da1e54d4d1427c1/pomoxis-0.2.3.tar.gz#sha256=e87e632ca3ef172590e059ddb7282d933294439ef71c3df67d9b56a969a45b8d (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.3
2020-06-05T14:38:26,426   Found link https://files.pythonhosted.org/packages/fa/d1/392448c751e2c024e51075f04d81067530d326e33a36dd6726f617bb3b4d/pomoxis-0.2.4.tar.gz#sha256=2f4a45d1bc48725a24ede76b07cd66bb9432e0b382685f4ea0abc4715eb96fc2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.4
2020-06-05T14:38:26,428   Found link https://files.pythonhosted.org/packages/2d/53/aac67c49cd9c3e371dfe4ae88674d68271e8d5eb3d53111edb4c44efa4d0/pomoxis-0.2.5.tar.gz#sha256=014894e06e107701593d2d470785f9ac940a6907a456cae1b2e65447f0bcf2e9 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.2.5
2020-06-05T14:38:26,430   Found link https://files.pythonhosted.org/packages/c1/4b/6b3e8a6407ddacfc1d8e4f22482eb2edf3ab34fe830a83bf2d4003302499/pomoxis-0.3.0a1.tar.gz#sha256=d19daeeff38498c5b270c49a3796c459b3506e0188a79b80de6a5fde914db7fd (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.3.0a1
2020-06-05T14:38:26,431   Found link https://files.pythonhosted.org/packages/34/ec/2b29e6232c6b4ba278071f99ee5e6804d6a751887cd4e0302f12692ac4c4/pomoxis-0.3.0.tar.gz#sha256=945ed681b1bfc6e22c0c217b6c7854762408718ee5bd29732ce1aa2b8fb873a2 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.3.0
2020-06-05T14:38:26,433   Found link https://files.pythonhosted.org/packages/da/76/32271d7ddec228f6d9b1ed618fc602f51a26d20e3bea7c06ae9bae74f6a0/pomoxis-0.3.1.tar.gz#sha256=08cec3223b638480187605bb0a3a46e9c09fc401a050e292156c4e56b839564a (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.3.1
2020-06-05T14:38:26,434   Found link https://files.pythonhosted.org/packages/81/7c/6fa149a088ec5cdca9133e3cf6a3f36138ad98361cc993f64c7148a98ae7/pomoxis-0.3.2.tar.gz#sha256=9fda874f5b242881c75cb5eabe4a2580a09f7d278e21be4cf08c3658e3048ea3 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.3.2
2020-06-05T14:38:26,436   Found link https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1 (from https://pypi.org/simple/pomoxis/) (requires-python:>=3.5.2, <3.7), version: 0.3.4
2020-06-05T14:38:26,449 Given no hashes to check 1 links for project 'pomoxis': discarding no candidates
2020-06-05T14:38:26,451 Using version 0.3.4 (newest of versions: 0.3.4)
2020-06-05T14:38:26,458 Collecting pomoxis==0.3.4
2020-06-05T14:38:26,463   Created temporary directory: /tmp/pip-unpack-0vvf66x4
2020-06-05T14:38:26,698   Downloading pomoxis-0.3.4.tar.gz (86 kB)
2020-06-05T14:38:26,967   Added pomoxis==0.3.4 from https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1 to build tracker '/tmp/pip-req-tracker-hvhj9s_h'
2020-06-05T14:38:26,970     Running setup.py (path:/tmp/pip-wheel-0yzjj_hp/pomoxis/setup.py) egg_info for package pomoxis
2020-06-05T14:38:26,971     Created temporary directory: /tmp/pip-pip-egg-info-htst7mtc
2020-06-05T14:38:26,972     Running command python setup.py egg_info
2020-06-05T14:38:29,291     running egg_info
2020-06-05T14:38:29,296     creating /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info
2020-06-05T14:38:29,300     writing entry points to /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/entry_points.txt
2020-06-05T14:38:29,304     writing /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/PKG-INFO
2020-06-05T14:38:29,310     writing requirements to /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/requires.txt
2020-06-05T14:38:29,312     writing top-level names to /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/top_level.txt
2020-06-05T14:38:29,314     writing dependency_links to /tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/dependency_links.txt
2020-06-05T14:38:29,319     writing manifest file '/tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/SOURCES.txt'
2020-06-05T14:38:29,673     reading manifest file '/tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/SOURCES.txt'
2020-06-05T14:38:29,677     reading manifest template 'MANIFEST.in'
2020-06-05T14:38:29,682     no previously-included directories found matching 'build'
2020-06-05T14:38:29,683     no previously-included directories found matching 'docs'
2020-06-05T14:38:29,688     writing manifest file '/tmp/pip-pip-egg-info-htst7mtc/pomoxis.egg-info/SOURCES.txt'
2020-06-05T14:38:29,830   Source in /tmp/pip-wheel-0yzjj_hp/pomoxis has version 0.3.4, which satisfies requirement pomoxis==0.3.4 from https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1
2020-06-05T14:38:29,832   Removed pomoxis==0.3.4 from https://files.pythonhosted.org/packages/68/66/c63fc68165d3c8fe1dc68bd49570bb5a169c6deb6a65e551809b65dbece4/pomoxis-0.3.4.tar.gz#sha256=f05a7b0d9080b5ac4f573fcef6431f60823c6c04c09f1b9bb7569049abec23c1 from build tracker '/tmp/pip-req-tracker-hvhj9s_h'
2020-06-05T14:38:29,840 Building wheels for collected packages: pomoxis
2020-06-05T14:38:29,850   Created temporary directory: /tmp/pip-wheel-3awergbj
2020-06-05T14:38:29,851   Building wheel for pomoxis (setup.py): started
2020-06-05T14:38:29,851   Destination directory: /tmp/pip-wheel-3awergbj
2020-06-05T14:38:29,852   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0yzjj_hp/pomoxis/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0yzjj_hp/pomoxis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3awergbj
2020-06-05T14:38:32,228   running bdist_wheel
2020-06-05T14:38:32,240   running build
2020-06-05T14:38:32,241   running build_py
2020-06-05T14:38:32,571   creating build
2020-06-05T14:38:32,572   creating build/lib
2020-06-05T14:38:32,573   creating build/lib/pomoxis
2020-06-05T14:38:32,576   copying pomoxis/qscores_from_summary.py -> build/lib/pomoxis
2020-06-05T14:38:32,582   copying pomoxis/util.py -> build/lib/pomoxis
2020-06-05T14:38:32,588   copying pomoxis/subsample_bam.py -> build/lib/pomoxis
2020-06-05T14:38:32,596   copying pomoxis/common_errors_from_bam.py -> build/lib/pomoxis
2020-06-05T14:38:32,603   copying pomoxis/summary_from_stats.py -> build/lib/pomoxis
2020-06-05T14:38:32,609   copying pomoxis/trim_alignments.py -> build/lib/pomoxis
2020-06-05T14:38:32,616   copying pomoxis/bio.py -> build/lib/pomoxis
2020-06-05T14:38:32,622   copying pomoxis/find_indels.py -> build/lib/pomoxis
2020-06-05T14:38:32,629   copying pomoxis/catalogue_errors.py -> build/lib/pomoxis
2020-06-05T14:38:32,641   copying pomoxis/ref_seqs_from_bam.py -> build/lib/pomoxis
2020-06-05T14:38:32,647   copying pomoxis/assess_homopolymers.py -> build/lib/pomoxis
2020-06-05T14:38:32,655   copying pomoxis/__init__.py -> build/lib/pomoxis
2020-06-05T14:38:32,661   copying pomoxis/stats_from_bam.py -> build/lib/pomoxis
2020-06-05T14:38:32,668   copying pomoxis/coverage_from_bam.py -> build/lib/pomoxis
2020-06-05T14:38:32,678   running build_scripts
2020-06-05T14:38:32,680   creating build/scripts-3.5
2020-06-05T14:38:32,685   copying scripts/assess_assembly -> build/scripts-3.5
2020-06-05T14:38:32,694   copying scripts/intersect_assembly_errors -> build/scripts-3.5
2020-06-05T14:38:32,700   copying scripts/mini_align -> build/scripts-3.5
2020-06-05T14:38:32,707   copying scripts/mini_assemble -> build/scripts-3.5
2020-06-05T14:38:32,717   installing to build/bdist.linux-armv7l/wheel
2020-06-05T14:38:32,718   running install
2020-06-05T14:38:32,722   running install_lib
2020-06-05T14:38:32,734   creating build/bdist.linux-armv7l
2020-06-05T14:38:32,735   creating build/bdist.linux-armv7l/wheel
2020-06-05T14:38:32,739   creating build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,742   copying build/lib/pomoxis/qscores_from_summary.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,747   copying build/lib/pomoxis/util.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,753   copying build/lib/pomoxis/subsample_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,761   copying build/lib/pomoxis/common_errors_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,768   copying build/lib/pomoxis/summary_from_stats.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,775   copying build/lib/pomoxis/trim_alignments.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,781   copying build/lib/pomoxis/bio.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,788   copying build/lib/pomoxis/find_indels.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,795   copying build/lib/pomoxis/catalogue_errors.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,806   copying build/lib/pomoxis/ref_seqs_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,812   copying build/lib/pomoxis/assess_homopolymers.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,820   copying build/lib/pomoxis/__init__.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,826   copying build/lib/pomoxis/stats_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,834   copying build/lib/pomoxis/coverage_from_bam.py -> build/bdist.linux-armv7l/wheel/pomoxis
2020-06-05T14:38:32,839   running install_egg_info
2020-06-05T14:38:32,890   running egg_info
2020-06-05T14:38:32,893   writing pomoxis.egg-info/PKG-INFO
2020-06-05T14:38:32,899   writing dependency_links to pomoxis.egg-info/dependency_links.txt
2020-06-05T14:38:32,902   writing top-level names to pomoxis.egg-info/top_level.txt
2020-06-05T14:38:32,904   writing requirements to pomoxis.egg-info/requires.txt
2020-06-05T14:38:32,909   writing entry points to pomoxis.egg-info/entry_points.txt
2020-06-05T14:38:32,920   reading manifest file 'pomoxis.egg-info/SOURCES.txt'
2020-06-05T14:38:32,926   reading manifest template 'MANIFEST.in'
2020-06-05T14:38:32,930   no previously-included directories found matching 'build'
2020-06-05T14:38:32,931   no previously-included directories found matching 'docs'
2020-06-05T14:38:32,938   writing manifest file 'pomoxis.egg-info/SOURCES.txt'
2020-06-05T14:38:32,941   Copying pomoxis.egg-info to build/bdist.linux-armv7l/wheel/pomoxis-0.3.4-py3.5.egg-info
2020-06-05T14:38:32,984   running install_scripts
2020-06-05T14:38:33,116   creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data
2020-06-05T14:38:33,117   creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts
2020-06-05T14:38:33,120   copying build/scripts-3.5/mini_assemble -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts
2020-06-05T14:38:33,126   copying build/scripts-3.5/intersect_assembly_errors -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts
2020-06-05T14:38:33,131   copying build/scripts-3.5/mini_align -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts
2020-06-05T14:38:33,136   copying build/scripts-3.5/assess_assembly -> build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts
2020-06-05T14:38:33,142   changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts/mini_assemble to 755
2020-06-05T14:38:33,143   changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts/intersect_assembly_errors to 755
2020-06-05T14:38:33,145   changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts/mini_align to 755
2020-06-05T14:38:33,146   changing mode of build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.data/scripts/assess_assembly to 755
2020-06-05T14:38:33,237   creating build/bdist.linux-armv7l/wheel/pomoxis-0.3.4.dist-info/WHEEL
2020-06-05T14:38:33,550   Building wheel for pomoxis (setup.py): finished with status 'done'
2020-06-05T14:38:33,555   Created wheel for pomoxis: filename=pomoxis-0.3.4-py3-none-any.whl size=53913 sha256=557dba2170229621980820be9b006d7e9c0fb327844443a59120f93982a1efa1
2020-06-05T14:38:33,556   Stored in directory: /tmp/pip-ephem-wheel-cache-vh2sdhmm/wheels/78/1f/9c/d7398ea3735d25af2b97ed62b7f6109aa626965efde901e532
2020-06-05T14:38:33,562 Successfully built pomoxis
2020-06-05T14:38:33,580 Removed build tracker: '/tmp/pip-req-tracker-hvhj9s_h'