Created temporary directory: /tmp/pip-ephem-wheel-cache-8u7korj2 Created temporary directory: /tmp/pip-req-tracker-kbxaz3aq Created requirements tracker '/tmp/pip-req-tracker-kbxaz3aq' Created temporary directory: /tmp/pip-wheel-ylysdwe5 Collecting scipion-em-eman2==3.1.0 1 location(s) to search for versions of scipion-em-eman2: * https://pypi.org/simple/scipion-em-eman2/ Getting page https://pypi.org/simple/scipion-em-eman2/ Analyzing links from page https://pypi.org/simple/scipion-em-eman2/ Found link https://files.pythonhosted.org/packages/a7/0f/7d43b6c07af0e5fa106f0b1fc01de1a6a99e6232a0436fcd20abffe580b5/scipion-em-eman2-1.0.0.tar.gz#sha256=4d20f96f49786911b7d7ef56ff2f7a82ec7f923f3db64d3f00a784bf647353d6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.0 Found link https://files.pythonhosted.org/packages/80/b7/9196fe07a94d2a0fa1a791afd66470766a02cace55303598b9afd5e67b04/scipion-em-eman2-1.0.1.tar.gz#sha256=ac698992904e0677790ab735d662185742cc4902fd0fd8e246640e4e898520b7 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.1 Found link https://files.pythonhosted.org/packages/00/80/5ab64971bf1409b607df23af77185cfe2a05a9d274f3104d83d1a21fbd62/scipion-em-eman2-1.0.2.tar.gz#sha256=6bea98c34bebbb95ddd7e16bf347aac6f6b1bd13298677ec792c0eb829f1c475 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.2 Found link https://files.pythonhosted.org/packages/4b/76/6cb8d5d87de446dec6cc0cb8ba31c717d43f3e1b43b3299d22791a3066c9/scipion-em-eman2-1.0.3.tar.gz#sha256=1066b6c6bca5c5d36179df756e0374c3e82943b516260560129ecbffe3f8c05c (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.3 Found link https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.4 Found link https://files.pythonhosted.org/packages/e3/5a/2192c7e097a8db09d3ea10c795b2e220ea059882d1a918dd84aff6439d79/scipion-em-eman2-1.0.5.tar.gz#sha256=98c2eb48fd8c6ffa1d4fdf281076e63591e4106074872bb18bd53abec3fbdfd6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.5 Found link https://files.pythonhosted.org/packages/65/16/5e861f129229ffeeea4dad00f82f6af80c39a6f0ee6379f3879af1d3104d/scipion-em-eman2-1.0.6.tar.gz#sha256=8741612d171a3f2569a6db175e7c10d416b3ddf7b5d4511200bf33434aea34e6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.6 Found link https://files.pythonhosted.org/packages/66/9a/cbb2f0f516e8efeafd12301f8ff597dc1d28e2969d4628f3baa7ed89f51a/scipion-em-eman2-1.0.7.tar.gz#sha256=a25d3e016ba6c445d13a03ba197a776b45ee98aaf342465cbbbfd34c8f93b20b (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.7 Found link https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee (from https://pypi.org/simple/scipion-em-eman2/), version: 3.1.0 Using version 3.1.0 (newest of versions: 3.1.0) Created temporary directory: /tmp/pip-unpack-godl5jhf Downloading https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz (131kB) Downloading from URL https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee (from https://pypi.org/simple/scipion-em-eman2/) Added scipion-em-eman2==3.1.0 from https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee to build tracker '/tmp/pip-req-tracker-kbxaz3aq' Running setup.py (path:/tmp/pip-wheel-ylysdwe5/scipion-em-eman2/setup.py) egg_info for package scipion-em-eman2 Running command python setup.py egg_info running egg_info creating pip-egg-info/scipion_em_eman2.egg-info writing entry points to pip-egg-info/scipion_em_eman2.egg-info/entry_points.txt writing pip-egg-info/scipion_em_eman2.egg-info/PKG-INFO writing dependency_links to pip-egg-info/scipion_em_eman2.egg-info/dependency_links.txt writing top-level names to pip-egg-info/scipion_em_eman2.egg-info/top_level.txt writing requirements to pip-egg-info/scipion_em_eman2.egg-info/requires.txt writing manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt' reading manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pip-egg-info/scipion_em_eman2.egg-info/SOURCES.txt' Source in /tmp/pip-wheel-ylysdwe5/scipion-em-eman2 has version 3.1.0, which satisfies requirement scipion-em-eman2==3.1.0 from https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee Removed scipion-em-eman2==3.1.0 from https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee from build tracker '/tmp/pip-req-tracker-kbxaz3aq' Building wheels for collected packages: scipion-em-eman2 Created temporary directory: /tmp/pip-wheel-h7yj9f3c Running setup.py bdist_wheel for scipion-em-eman2: started Destination directory: /tmp/pip-wheel-h7yj9f3c Running command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-wheel-ylysdwe5/scipion-em-eman2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-h7yj9f3c running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/eman2 copying eman2/e2ih.py -> build/lib/eman2 copying eman2/__init__.py -> build/lib/eman2 copying eman2/e2converter.py -> build/lib/eman2 copying eman2/bibtex.py -> build/lib/eman2 copying eman2/constants.py -> build/lib/eman2 copying eman2/wizards.py -> build/lib/eman2 copying eman2/viewers.py -> build/lib/eman2 creating build/lib/eman2/viewers copying eman2/viewers/views_tkinter_tree.py -> build/lib/eman2/viewers copying eman2/viewers/__init__.py -> build/lib/eman2/viewers copying eman2/viewers/viewers_data.py -> build/lib/eman2/viewers creating build/lib/eman2/tests copying eman2/tests/__init__.py -> build/lib/eman2/tests copying eman2/tests/test_protocols_eman.py -> build/lib/eman2/tests creating build/lib/eman2/protocols copying eman2/protocols/protocol_tiltvalidate.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_autopick_sparx.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_refine2d_bispec.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_boxing.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_reconstruct.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_refineasy.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_refine2d.py -> build/lib/eman2/protocols copying eman2/protocols/__init__.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_autopick_boxer.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_boxing.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_template_match.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_reconstruction.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_subtomogram_refinement.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_initialmodel_sgd.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_initialmodel.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_ctf.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_initialmodel.py -> build/lib/eman2/protocols copying eman2/protocols/protocol_tomo_extraction.py -> build/lib/eman2/protocols creating build/lib/eman2/convert copying eman2/convert/__init__.py -> build/lib/eman2/convert copying eman2/convert/convert.py -> build/lib/eman2/convert copying eman2/convert/dataimport.py -> build/lib/eman2/convert copying eman2/eman2_logo.png -> build/lib/eman2 copying eman2/protocols.conf -> build/lib/eman2 installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/eman2 creating build/bdist.linux-armv7l/wheel/eman2/viewers copying build/lib/eman2/viewers/views_tkinter_tree.py -> build/bdist.linux-armv7l/wheel/eman2/viewers copying build/lib/eman2/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/viewers copying build/lib/eman2/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/eman2/viewers copying build/lib/eman2/e2ih.py -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/__init__.py -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/eman2_logo.png -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/e2converter.py -> build/bdist.linux-armv7l/wheel/eman2 creating build/bdist.linux-armv7l/wheel/eman2/tests copying build/lib/eman2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/tests copying build/lib/eman2/tests/test_protocols_eman.py -> build/bdist.linux-armv7l/wheel/eman2/tests creating build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tiltvalidate.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_autopick_sparx.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_refine2d_bispec.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_boxing.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_refineasy.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_refine2d.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_autopick_boxer.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_boxing.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_template_match.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_reconstruction.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_subtomogram_refinement.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_initialmodel_sgd.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_ctf.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_initialmodel.py -> build/bdist.linux-armv7l/wheel/eman2/protocols copying build/lib/eman2/protocols/protocol_tomo_extraction.py -> build/bdist.linux-armv7l/wheel/eman2/protocols creating build/bdist.linux-armv7l/wheel/eman2/convert copying build/lib/eman2/convert/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/convert copying build/lib/eman2/convert/convert.py -> build/bdist.linux-armv7l/wheel/eman2/convert copying build/lib/eman2/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/eman2/convert copying build/lib/eman2/bibtex.py -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/constants.py -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/wizards.py -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/protocols.conf -> build/bdist.linux-armv7l/wheel/eman2 copying build/lib/eman2/viewers.py -> build/bdist.linux-armv7l/wheel/eman2 running install_egg_info running egg_info writing scipion_em_eman2.egg-info/PKG-INFO writing top-level names to scipion_em_eman2.egg-info/top_level.txt writing entry points to scipion_em_eman2.egg-info/entry_points.txt writing dependency_links to scipion_em_eman2.egg-info/dependency_links.txt writing requirements to scipion_em_eman2.egg-info/requires.txt reading manifest file 'scipion_em_eman2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scipion_em_eman2.egg-info/SOURCES.txt' Copying scipion_em_eman2.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_eman2-3.1.0-py3.4.egg-info running install_scripts adding license file "LICENSE" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-armv7l/wheel/scipion_em_eman2-3.1.0.dist-info/WHEEL creating '/tmp/pip-wheel-h7yj9f3c/scipion_em_eman2-3.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'eman2/__init__.py' adding 'eman2/bibtex.py' adding 'eman2/constants.py' adding 'eman2/e2converter.py' adding 'eman2/e2ih.py' adding 'eman2/eman2_logo.png' adding 'eman2/protocols.conf' adding 'eman2/viewers.py' adding 'eman2/wizards.py' adding 'eman2/convert/__init__.py' adding 'eman2/convert/convert.py' adding 'eman2/convert/dataimport.py' adding 'eman2/protocols/__init__.py' adding 'eman2/protocols/protocol_autopick_boxer.py' adding 'eman2/protocols/protocol_autopick_sparx.py' adding 'eman2/protocols/protocol_boxing.py' adding 'eman2/protocols/protocol_ctf.py' adding 'eman2/protocols/protocol_initialmodel.py' adding 'eman2/protocols/protocol_initialmodel_sgd.py' adding 'eman2/protocols/protocol_reconstruct.py' adding 'eman2/protocols/protocol_refine2d.py' adding 'eman2/protocols/protocol_refine2d_bispec.py' adding 'eman2/protocols/protocol_refineasy.py' adding 'eman2/protocols/protocol_tiltvalidate.py' adding 'eman2/protocols/protocol_tomo_boxing.py' adding 'eman2/protocols/protocol_tomo_extraction.py' adding 'eman2/protocols/protocol_tomo_initialmodel.py' adding 'eman2/protocols/protocol_tomo_reconstruction.py' adding 'eman2/protocols/protocol_tomo_subtomogram_refinement.py' adding 'eman2/protocols/protocol_tomo_template_match.py' adding 'eman2/tests/__init__.py' adding 'eman2/tests/test_protocols_eman.py' adding 'eman2/viewers/__init__.py' adding 'eman2/viewers/viewers_data.py' adding 'eman2/viewers/views_tkinter_tree.py' adding 'scipion_em_eman2-3.1.0.dist-info/LICENSE' adding 'scipion_em_eman2-3.1.0.dist-info/METADATA' adding 'scipion_em_eman2-3.1.0.dist-info/WHEEL' adding 'scipion_em_eman2-3.1.0.dist-info/entry_points.txt' adding 'scipion_em_eman2-3.1.0.dist-info/top_level.txt' adding 'scipion_em_eman2-3.1.0.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Running setup.py bdist_wheel for scipion-em-eman2: finished with status 'done' Stored in directory: /tmp/tmpbg5v829w Successfully built scipion-em-eman2 Cleaning up... Removing source in /tmp/pip-wheel-ylysdwe5/scipion-em-eman2 Removed build tracker '/tmp/pip-req-tracker-kbxaz3aq'