2020-06-10T02:19:30,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ikh355r
2020-06-10T02:19:30,961 Created temporary directory: /tmp/pip-req-tracker-77kct8jw
2020-06-10T02:19:30,961 Initialized build tracking at /tmp/pip-req-tracker-77kct8jw
2020-06-10T02:19:30,964 Created build tracker: /tmp/pip-req-tracker-77kct8jw
2020-06-10T02:19:30,964 Entered build tracker: /tmp/pip-req-tracker-77kct8jw
2020-06-10T02:19:30,965 Created temporary directory: /tmp/pip-wheel-0mg4l9jr
2020-06-10T02:19:30,985 1 location(s) to search for versions of pegasuspy:
2020-06-10T02:19:30,985 * https://pypi.org/simple/pegasuspy/
2020-06-10T02:19:30,985 Fetching project page and analyzing links: https://pypi.org/simple/pegasuspy/
2020-06-10T02:19:30,987 Getting page https://pypi.org/simple/pegasuspy/
2020-06-10T02:19:30,991 Found index url https://pypi.org/simple
2020-06-10T02:19:31,265   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/18/ca/713ebcc6bd0168cb4f45cf34c888e888512a1ea7f70939856c5136b53859/pegasuspy-0.15.0-py3-none-any.whl#sha256=9c39b39315856874099d288d4fe2b572876bfec1478ce351e24558317fa86d28 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,267   Found link https://files.pythonhosted.org/packages/f0/ff/83b88468fa01426d8e35da579a2e23a0be539c305ccd8841f2fa1c43fb10/pegasuspy-0.15.0.tar.gz#sha256=3bfe514a17b3b4d8f9a238777513617d7d428c39da725e2c12ff23a99f0c1490 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.15.0
2020-06-10T02:19:31,269   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/70/28/fb5d2565c284cd8d0dd548ec420f9f615aa2cb327860165ec284c604e241/pegasuspy-0.15.1rc1-py3-none-any.whl#sha256=197cf320fd21f2401ccf3cd5e11d703eb47bc452b8a042a010218520c5701e17 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,270   Found link https://files.pythonhosted.org/packages/d9/5c/91d87965f024c58407db76f321b01afac4c45ae51e314ca912d7109c6509/pegasuspy-0.15.1rc1.tar.gz#sha256=10ddd491afdfdbaf4c9b7da93d5daa564f3c8021defbd4d0cece36a487deca08 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.15.1rc1
2020-06-10T02:19:31,271   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/ff/fd/d1e08af21e655a7bf29043a4f3257212a76d558c72789428f56ecadbfe16/pegasuspy-0.16.0-py3-none-any.whl#sha256=7812ab44430697915b7d9a1ebb53a6feb3aa58476dd0242917b84aa0bc0bb482 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,273   Found link https://files.pythonhosted.org/packages/08/f8/28648c51a11e21b3fc46a61a2cbf2d65e2a00a0cef659afe2ad86c234695/pegasuspy-0.16.0.tar.gz#sha256=da74cfbdffd7f902bd867639c5a92d78a797c6f65ceb9e2688a3ab4bcb3cabe1 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.0
2020-06-10T02:19:31,274   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/65/f5/ff578f19dd8d2497ee31f5dc4a3d2c180c5621d17d48cb2e80eb706bfd44/pegasuspy-0.16.1-py3-none-any.whl#sha256=288d1e44d9b612eb5576dd8bac1d0c895113df6e41a965e9c187ed82ad41d9f5 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,276   Found link https://files.pythonhosted.org/packages/28/b0/21be63c85132b5fae7855e0ac9716dfc2553fa01c584df7404983a6692dd/pegasuspy-0.16.1.tar.gz#sha256=a25ce873742c2e8c52e01298f0068dacd869ec39b2c6431f220c373bc6db274d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.1
2020-06-10T02:19:31,277   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/79/8b/fd754c5701094271fc2df5c9bb4e55ec2b38f6cf0648cb5e1c369765823f/pegasuspy-0.16.2-py3-none-any.whl#sha256=8d10f9e91908402e295a75e410652c0de1d8fded761402397953ed7b45377f27 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,278   Found link https://files.pythonhosted.org/packages/98/84/d7e49539451149c617c2ed2daa6b5663b6cf37d17253844533ed648ae681/pegasuspy-0.16.2.tar.gz#sha256=57bb54bea118d0368da398987cdd1e412084b161baf1f06b802bb2687cd2464b (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.2
2020-06-10T02:19:31,279   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/0c/c2/ba4e3085e9ef4dd93e3b8c90ad8706488375134ed9db30b6564effe72af6/pegasuspy-0.16.3-py3-none-any.whl#sha256=686aee7e869dcc9468e3b88985eb3e42d944f47db3b59addc6355c5edc0f7ab8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,281   Found link https://files.pythonhosted.org/packages/81/82/83ea4bb5ae914d182c8a7b54d9ff616627241131572bbe0bf04e35d2e4b9/pegasuspy-0.16.3.tar.gz#sha256=02013e421d7f343e406e07e808bee5ff31e0b68847464d02b8640fa5bf959e42 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.3
2020-06-10T02:19:31,282   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/1a/bf/aa0b0c01c7ea922c49e14ab76d967801f269dc0c93f62dbc5eaf650e3428/pegasuspy-0.16.5-py3-none-any.whl#sha256=3e6d21ff56aed0b6a024abb477a5d7976e8b3d2da88431b2f24290fade257c49 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,283   Found link https://files.pythonhosted.org/packages/6d/93/712e3a84cc74372ce69d8bd6d1e131baa3368ecd16b412c3d6ee18fd43ab/pegasuspy-0.16.5.tar.gz#sha256=451ee56a1213a04eac19df5ae4046bbdadc7ce5d207a523cec086da26a616e1d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.5
2020-06-10T02:19:31,284   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/a1/f3/4a90343abce44d021479f012673fe5c069db2527528b731aadb5213d4658/pegasuspy-0.16.6-py3-none-any.whl#sha256=52a1e27e2dac8b60711fd6531cc5276c9750e4a42497906deab345793d5f952f (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,286   Found link https://files.pythonhosted.org/packages/8d/89/409cb8dc4f5812fa271274fe74aef225c092d3f1eacc9487455815e66dc9/pegasuspy-0.16.6.tar.gz#sha256=a213d10ee5512eb52ceeb66d39ab0f856e577551b5e7dffa59881b7685fb116e (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.6
2020-06-10T02:19:31,287   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/1b/36/d24d16b53b441faa2df90fc63302364b700ee4d318b28e306cb78342d12b/pegasuspy-0.16.7-py3-none-any.whl#sha256=1f9c89da7053ef44c8e8afe033e364b47e223b4495e790ff6235ccff6390a285 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,288   Found link https://files.pythonhosted.org/packages/50/58/35150627d1cf973677c0ed2b6326b3bf3359bf886738472d0f6981578f1d/pegasuspy-0.16.7.tar.gz#sha256=0ba937d860ccabf290077bb5c39d492bb145c7af5b8fe0788a4ea7471b5bb762 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.7
2020-06-10T02:19:31,289   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/29/e0/6a27caf0cffe0bbf3c98ebe983c679ce8b7514e74dd766a7a678a8d25ee2/pegasuspy-0.16.8-py3-none-any.whl#sha256=0b5ea3b887ed650d442e71c6ce4c4a81045907b189e2430eeeb045feada9d807 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,291   Found link https://files.pythonhosted.org/packages/b4/ff/56d89655ceb3a6d54c99893facdc392997e68008c6c2f863e468f9910da3/pegasuspy-0.16.8.tar.gz#sha256=1f82a6bd7af74b022641e9edebe77ae564d2188db18f6de8f1c4527f5f676435 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.8
2020-06-10T02:19:31,292   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/c6/2d/0686b95229722a40e35f01681a0c9ef0e0adadf481ac45fb906490862d51/pegasuspy-0.16.9-py3-none-any.whl#sha256=df066d0fe8ad50bf9a1709da8c2e5abd6e431b67258011e44b048c660e953bab (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,294   Found link https://files.pythonhosted.org/packages/87/98/2b914080c9c7e0ee1518e683b8720d0d5fba51edea00825170acdb7d9f08/pegasuspy-0.16.9.tar.gz#sha256=9a4cef861d93f886995606ce2f25d0fc4846ddde363e0e3cdec51f6364d97ca8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.9
2020-06-10T02:19:31,294   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/56/7e/d9bf005421a0b4238da0d6fca51c93fe3c7f415c0a96edbea4295133388a/pegasuspy-0.16.11-py3-none-any.whl#sha256=2da2a81b0c09b7e8939a94089c65effbbdc6e5b078cfd1ba1c8f259ab89dc58a (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,296   Found link https://files.pythonhosted.org/packages/48/08/a7654e7b48c5f26847a9586b7d5fbb54c23f40c71be18c27d12b3fcb0f9c/pegasuspy-0.16.11.tar.gz#sha256=4846dbca65a16aeba87b24e248f624c411fe595958e2cca4827b58601861d18f (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.11
2020-06-10T02:19:31,297   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/48/db/f9110046389772f47daf5d57b3fe79bd35f5441a78f7dd49e576af73e6a2/pegasuspy-0.17.0-py3-none-any.whl#sha256=ebaaa92c2db9f6e602965672375cf6b6df684b65e23511547710b1528613b87d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,299   Found link https://files.pythonhosted.org/packages/1d/5c/29cddea5905aca1140c81da90f4c8574710ef4e217c698f0adbb0a5eb0c2/pegasuspy-0.17.0.tar.gz#sha256=855bf0ff3ddacea4c7b6554e5b3206db10d517b457f037d95807c9667e0fa9b7 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.17.0
2020-06-10T02:19:31,300   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/9e/f0/8bc6d3ca5ee1f9bcc1ba8f74a1b2555b382834f2bacc930c31a5613a4928/pegasuspy-0.17.1-py3-none-any.whl#sha256=e9ebad4ac73560a02eab8d2d2507a03d247016bbc33bdfcadbf0f4a8241dd4f7 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,301   Found link https://files.pythonhosted.org/packages/be/94/ec2021a44cd70dd8cc38b5a653eae86e2dc2e1f6a2ff7f1f5ee4bdc5d75c/pegasuspy-0.17.1.tar.gz#sha256=2ac5d7103ed08d0663557bf762359f3ce1561b5905f1b9648b405db133611d7c (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.17.1
2020-06-10T02:19:31,302   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/40/f3/31832c9000dc728271fb07d42518cfecdb560da5293d6b63ce64a5622bb0/pegasuspy-0.18.0b1-py3-none-any.whl#sha256=22f2c74d31ea42c29d0dfde340e9a9b6f944850ba360c03e9f572b42f78a9203 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-10T02:19:31,304   Found link https://files.pythonhosted.org/packages/ec/54/6c074602ceff8737efb1b600370062939f06246ead1c921e396a7f2beefe/pegasuspy-0.18.0b1.tar.gz#sha256=9d17c3982ec3b6a73f7f5e025f55cfdf556a023441e90452d6a45523db4c87e8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.18.0b1
2020-06-10T02:19:31,320 Given no hashes to check 1 links for project 'pegasuspy': discarding no candidates
2020-06-10T02:19:31,322 Using version 0.18.0b1 (newest of versions: 0.18.0b1)
2020-06-10T02:19:31,329 Collecting pegasuspy==0.18.0b1
2020-06-10T02:19:31,334   Created temporary directory: /tmp/pip-unpack-3qj3dobp
2020-06-10T02:19:31,590   Downloading pegasuspy-0.18.0b1.tar.gz (110 kB)
2020-06-10T02:19:32,140   Added pegasuspy==0.18.0b1 from https://files.pythonhosted.org/packages/ec/54/6c074602ceff8737efb1b600370062939f06246ead1c921e396a7f2beefe/pegasuspy-0.18.0b1.tar.gz#sha256=9d17c3982ec3b6a73f7f5e025f55cfdf556a023441e90452d6a45523db4c87e8 to build tracker '/tmp/pip-req-tracker-77kct8jw'
2020-06-10T02:19:32,142     Running setup.py (path:/tmp/pip-wheel-0mg4l9jr/pegasuspy/setup.py) egg_info for package pegasuspy
2020-06-10T02:19:32,144     Created temporary directory: /tmp/pip-pip-egg-info-cf95gj_1
2020-06-10T02:19:32,144     Running command python setup.py egg_info
2020-06-10T02:19:40,995     running egg_info
2020-06-10T02:19:41,003     creating /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info
2020-06-10T02:19:41,006     writing entry points to /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/entry_points.txt
2020-06-10T02:19:41,009     writing dependency_links to /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/dependency_links.txt
2020-06-10T02:19:41,011     writing /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/PKG-INFO
2020-06-10T02:19:41,016     writing top-level names to /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/top_level.txt
2020-06-10T02:19:41,018     writing requirements to /tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/requires.txt
2020-06-10T02:19:41,024     writing manifest file '/tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/SOURCES.txt'
2020-06-10T02:19:41,484     reading manifest file '/tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/SOURCES.txt'
2020-06-10T02:19:41,489     reading manifest template 'MANIFEST.in'
2020-06-10T02:19:41,494     warning: no previously-included files found matching 'tests/*'
2020-06-10T02:19:41,496     warning: no previously-included files found matching 'docs/**'
2020-06-10T02:19:41,498     warning: no previously-included files found matching 'notebooks/*'
2020-06-10T02:19:41,500     warning: no previously-included files found matching 'CODE_OF_CONDUCT.md'
2020-06-10T02:19:41,501     warning: no previously-included files found matching 'CONTRIBUTING.md'
2020-06-10T02:19:41,503     warning: no previously-included files found matching 'Dockerfile'
2020-06-10T02:19:41,504     warning: no previously-included files found matching 'Guide_containerized_vm.rst'
2020-06-10T02:19:41,506     warning: no previously-included files found matching 'requirements.txt'
2020-06-10T02:19:41,507     warning: no previously-included files found matching 'pyproject.toml'
2020-06-10T02:19:41,508     warning: no previously-included files found matching '.*'
2020-06-10T02:19:41,519     writing manifest file '/tmp/pip-pip-egg-info-cf95gj_1/pegasuspy.egg-info/SOURCES.txt'
2020-06-10T02:19:41,683   Source in /tmp/pip-wheel-0mg4l9jr/pegasuspy has version 0.18.0b1, which satisfies requirement pegasuspy==0.18.0b1 from https://files.pythonhosted.org/packages/ec/54/6c074602ceff8737efb1b600370062939f06246ead1c921e396a7f2beefe/pegasuspy-0.18.0b1.tar.gz#sha256=9d17c3982ec3b6a73f7f5e025f55cfdf556a023441e90452d6a45523db4c87e8
2020-06-10T02:19:41,685   Removed pegasuspy==0.18.0b1 from https://files.pythonhosted.org/packages/ec/54/6c074602ceff8737efb1b600370062939f06246ead1c921e396a7f2beefe/pegasuspy-0.18.0b1.tar.gz#sha256=9d17c3982ec3b6a73f7f5e025f55cfdf556a023441e90452d6a45523db4c87e8 from build tracker '/tmp/pip-req-tracker-77kct8jw'
2020-06-10T02:19:41,690 Building wheels for collected packages: pegasuspy
2020-06-10T02:19:41,700   Created temporary directory: /tmp/pip-wheel-48hihqem
2020-06-10T02:19:41,701   Building wheel for pegasuspy (setup.py): started
2020-06-10T02:19:41,702   Destination directory: /tmp/pip-wheel-48hihqem
2020-06-10T02:19:41,702   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0mg4l9jr/pegasuspy/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0mg4l9jr/pegasuspy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-48hihqem
2020-06-10T02:19:45,205   running bdist_wheel
2020-06-10T02:19:45,213   running build
2020-06-10T02:19:45,213   running build_py
2020-06-10T02:19:45,533   creating build
2020-06-10T02:19:45,534   creating build/lib
2020-06-10T02:19:45,536   creating build/lib/pegasus
2020-06-10T02:19:45,538   copying pegasus/__main__.py -> build/lib/pegasus
2020-06-10T02:19:45,543   copying pegasus/__init__.py -> build/lib/pegasus
2020-06-10T02:19:45,548   creating build/lib/pegasus/io
2020-06-10T02:19:45,550   copying pegasus/io/anndata_legacy.py -> build/lib/pegasus/io
2020-06-10T02:19:45,555   copying pegasus/io/data_structure.py -> build/lib/pegasus/io
2020-06-10T02:19:45,561   copying pegasus/io/io.py -> build/lib/pegasus/io
2020-06-10T02:19:45,569   copying pegasus/io/__init__.py -> build/lib/pegasus/io
2020-06-10T02:19:45,579   creating build/lib/pegasus/commands
2020-06-10T02:19:45,582   copying pegasus/commands/PARQUET.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,587   copying pegasus/commands/AggregateMatrix.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,592   copying pegasus/commands/iPlotting.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,596   copying pegasus/commands/Plotting.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,601   copying pegasus/commands/SubClustering.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,607   copying pegasus/commands/ConvertH5SC.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,611   copying pegasus/commands/CITESeq.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,617   copying pegasus/commands/AnnotateCluster.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,622   copying pegasus/commands/SCPOutput.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,628   copying pegasus/commands/Clustering.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,635   copying pegasus/commands/Enrichment.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,639   copying pegasus/commands/View.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,643   copying pegasus/commands/DemuxEM.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,648   copying pegasus/commands/FindMarkers.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,653   copying pegasus/commands/Base.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,658   copying pegasus/commands/DownSample.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,663   copying pegasus/commands/DeAnalysis.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,669   copying pegasus/commands/__init__.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,673   copying pegasus/commands/CheckSampleIndexes.py -> build/lib/pegasus/commands
2020-06-10T02:19:45,679   creating build/lib/pegasus/plotting
2020-06-10T02:19:45,681   copying pegasus/plotting/run_plotting.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,685   copying pegasus/plotting/iplot_library.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,689   copying pegasus/plotting/plot_qc.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,695   copying pegasus/plotting/plot_library.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,703   copying pegasus/plotting/plot_utils.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,708   copying pegasus/plotting/__init__.py -> build/lib/pegasus/plotting
2020-06-10T02:19:45,714   creating build/lib/pegasus/misc
2020-06-10T02:19:45,716   copying pegasus/misc/__init__.py -> build/lib/pegasus/misc
2020-06-10T02:19:45,720   copying pegasus/misc/misc.py -> build/lib/pegasus/misc
2020-06-10T02:19:45,729   creating build/lib/pegasus/tools
2020-06-10T02:19:45,731   copying pegasus/tools/visualization.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,741   copying pegasus/tools/data_aggregation.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,747   copying pegasus/tools/enrichment.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,753   copying pegasus/tools/graph_operations.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,757   copying pegasus/tools/subcluster_utils.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,761   copying pegasus/tools/diff_expr.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,767   copying pegasus/tools/diffusion_map.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,772   copying pegasus/tools/hvf_selection.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,779   copying pegasus/tools/down_sampling.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,785   copying pegasus/tools/net_regressor.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,790   copying pegasus/tools/scp_output.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,797   copying pegasus/tools/clustering.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,804   copying pegasus/tools/utils.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,810   copying pegasus/tools/batch_correction.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,816   copying pegasus/tools/signature_score.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,820   copying pegasus/tools/pseudotime.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,824   copying pegasus/tools/nearest_neighbors.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,830   copying pegasus/tools/__init__.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,834   copying pegasus/tools/convert_to_parquet.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,840   copying pegasus/tools/gradient_boosting.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,846   copying pegasus/tools/preprocessing.py -> build/lib/pegasus/tools
2020-06-10T02:19:45,855   creating build/lib/pegasus/check_sample_indexes
2020-06-10T02:19:45,858   copying pegasus/check_sample_indexes/check_sample_indexes.py -> build/lib/pegasus/check_sample_indexes
2020-06-10T02:19:45,864   copying pegasus/check_sample_indexes/__init__.py -> build/lib/pegasus/check_sample_indexes
2020-06-10T02:19:45,872   creating build/lib/pegasus/pipeline
2020-06-10T02:19:45,875   copying pegasus/pipeline/pipeline.py -> build/lib/pegasus/pipeline
2020-06-10T02:19:45,882   copying pegasus/pipeline/demuxEM_pipeline.py -> build/lib/pegasus/pipeline
2020-06-10T02:19:45,887   copying pegasus/pipeline/__init__.py -> build/lib/pegasus/pipeline
2020-06-10T02:19:45,893   creating build/lib/pegasus/cite_seq
2020-06-10T02:19:45,895   copying pegasus/cite_seq/cite_seq.py -> build/lib/pegasus/cite_seq
2020-06-10T02:19:45,901   copying pegasus/cite_seq/__init__.py -> build/lib/pegasus/cite_seq
2020-06-10T02:19:45,907   creating build/lib/pegasus/demuxEM
2020-06-10T02:19:45,909   copying pegasus/demuxEM/plot.py -> build/lib/pegasus/demuxEM
2020-06-10T02:19:45,915   copying pegasus/demuxEM/down_sampling.py -> build/lib/pegasus/demuxEM
2020-06-10T02:19:45,920   copying pegasus/demuxEM/demuxEM.py -> build/lib/pegasus/demuxEM
2020-06-10T02:19:45,926   copying pegasus/demuxEM/__init__.py -> build/lib/pegasus/demuxEM
2020-06-10T02:19:45,931   creating build/lib/pegasus/utils
2020-06-10T02:19:45,933   copying pegasus/utils/decorators.py -> build/lib/pegasus/utils
2020-06-10T02:19:45,938   copying pegasus/utils/__init__.py -> build/lib/pegasus/utils
2020-06-10T02:19:45,944   creating build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,946   copying pegasus/annotate_cluster/annotate_cluster.py -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,953   copying pegasus/annotate_cluster/__init__.py -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,961   copying pegasus/check_sample_indexes/chromium-dna-sample-indexes-plate.json -> build/lib/pegasus/check_sample_indexes
2020-06-10T02:19:45,969   copying pegasus/annotate_cluster/human_immune_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,976   copying pegasus/annotate_cluster/mouse_immune_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,982   copying pegasus/annotate_cluster/mouse_brain_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,989   copying pegasus/annotate_cluster/human_brain_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:45,994   copying pegasus/annotate_cluster/human_lung_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-10T02:19:46,026   installing to build/bdist.linux-armv7l/wheel
2020-06-10T02:19:46,027   running install
2020-06-10T02:19:46,029   running install_lib
2020-06-10T02:19:46,038   creating build/bdist.linux-armv7l
2020-06-10T02:19:46,039   creating build/bdist.linux-armv7l/wheel
2020-06-10T02:19:46,043   creating build/bdist.linux-armv7l/wheel/pegasus
2020-06-10T02:19:46,047   creating build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-10T02:19:46,050   copying build/lib/pegasus/io/anndata_legacy.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-10T02:19:46,057   copying build/lib/pegasus/io/data_structure.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-10T02:19:46,064   copying build/lib/pegasus/io/io.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-10T02:19:46,072   copying build/lib/pegasus/io/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-10T02:19:46,079   creating build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,081   copying build/lib/pegasus/commands/PARQUET.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,086   copying build/lib/pegasus/commands/AggregateMatrix.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,091   copying build/lib/pegasus/commands/iPlotting.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,096   copying build/lib/pegasus/commands/Plotting.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,102   copying build/lib/pegasus/commands/SubClustering.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,109   copying build/lib/pegasus/commands/ConvertH5SC.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,114   copying build/lib/pegasus/commands/CITESeq.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,119   copying build/lib/pegasus/commands/AnnotateCluster.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,125   copying build/lib/pegasus/commands/SCPOutput.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,130   copying build/lib/pegasus/commands/Clustering.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,138   copying build/lib/pegasus/commands/Enrichment.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,142   copying build/lib/pegasus/commands/View.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,146   copying build/lib/pegasus/commands/DemuxEM.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,151   copying build/lib/pegasus/commands/FindMarkers.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,155   copying build/lib/pegasus/commands/Base.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,160   copying build/lib/pegasus/commands/DownSample.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,165   copying build/lib/pegasus/commands/DeAnalysis.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,171   copying build/lib/pegasus/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,176   copying build/lib/pegasus/commands/CheckSampleIndexes.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-10T02:19:46,183   creating build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,186   copying build/lib/pegasus/plotting/run_plotting.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,192   copying build/lib/pegasus/plotting/iplot_library.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,198   copying build/lib/pegasus/plotting/plot_qc.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,204   copying build/lib/pegasus/plotting/plot_library.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,212   copying build/lib/pegasus/plotting/plot_utils.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,218   copying build/lib/pegasus/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-10T02:19:46,225   creating build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-10T02:19:46,227   copying build/lib/pegasus/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-10T02:19:46,234   copying build/lib/pegasus/misc/misc.py -> build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-10T02:19:46,243   creating build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,245   copying build/lib/pegasus/tools/visualization.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,256   copying build/lib/pegasus/tools/data_aggregation.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,263   copying build/lib/pegasus/tools/enrichment.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,269   copying build/lib/pegasus/tools/graph_operations.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,274   copying build/lib/pegasus/tools/subcluster_utils.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,280   copying build/lib/pegasus/tools/diff_expr.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,289   copying build/lib/pegasus/tools/diffusion_map.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,295   copying build/lib/pegasus/tools/hvf_selection.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,302   copying build/lib/pegasus/tools/down_sampling.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,308   copying build/lib/pegasus/tools/net_regressor.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,313   copying build/lib/pegasus/tools/scp_output.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,320   copying build/lib/pegasus/tools/clustering.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,327   copying build/lib/pegasus/tools/utils.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,333   copying build/lib/pegasus/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,340   copying build/lib/pegasus/tools/signature_score.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,345   copying build/lib/pegasus/tools/pseudotime.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,349   copying build/lib/pegasus/tools/nearest_neighbors.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,355   copying build/lib/pegasus/tools/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,359   copying build/lib/pegasus/tools/convert_to_parquet.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,365   copying build/lib/pegasus/tools/gradient_boosting.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,371   copying build/lib/pegasus/tools/preprocessing.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-10T02:19:46,379   copying build/lib/pegasus/__main__.py -> build/bdist.linux-armv7l/wheel/pegasus
2020-06-10T02:19:46,387   creating build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-10T02:19:46,391   copying build/lib/pegasus/check_sample_indexes/chromium-dna-sample-indexes-plate.json -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-10T02:19:46,400   copying build/lib/pegasus/check_sample_indexes/check_sample_indexes.py -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-10T02:19:46,405   copying build/lib/pegasus/check_sample_indexes/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-10T02:19:46,410   creating build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-10T02:19:46,412   copying build/lib/pegasus/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-10T02:19:46,418   copying build/lib/pegasus/pipeline/demuxEM_pipeline.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-10T02:19:46,423   copying build/lib/pegasus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-10T02:19:46,429   creating build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-10T02:19:46,431   copying build/lib/pegasus/cite_seq/cite_seq.py -> build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-10T02:19:46,435   copying build/lib/pegasus/cite_seq/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-10T02:19:46,441   creating build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-10T02:19:46,443   copying build/lib/pegasus/demuxEM/plot.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-10T02:19:46,450   copying build/lib/pegasus/demuxEM/down_sampling.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-10T02:19:46,456   copying build/lib/pegasus/demuxEM/demuxEM.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-10T02:19:46,463   copying build/lib/pegasus/demuxEM/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-10T02:19:46,468   creating build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-10T02:19:46,470   copying build/lib/pegasus/utils/decorators.py -> build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-10T02:19:46,477   copying build/lib/pegasus/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-10T02:19:46,484   creating build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,486   copying build/lib/pegasus/annotate_cluster/mouse_brain_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,491   copying build/lib/pegasus/annotate_cluster/annotate_cluster.py -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,497   copying build/lib/pegasus/annotate_cluster/human_brain_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,501   copying build/lib/pegasus/annotate_cluster/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,507   copying build/lib/pegasus/annotate_cluster/human_immune_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,514   copying build/lib/pegasus/annotate_cluster/human_lung_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,521   copying build/lib/pegasus/annotate_cluster/mouse_immune_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-10T02:19:46,527   copying build/lib/pegasus/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus
2020-06-10T02:19:46,532   running install_egg_info
2020-06-10T02:19:46,551   running egg_info
2020-06-10T02:19:46,553   writing entry points to pegasuspy.egg-info/entry_points.txt
2020-06-10T02:19:46,556   writing requirements to pegasuspy.egg-info/requires.txt
2020-06-10T02:19:46,559   writing top-level names to pegasuspy.egg-info/top_level.txt
2020-06-10T02:19:46,561   writing dependency_links to pegasuspy.egg-info/dependency_links.txt
2020-06-10T02:19:46,564   writing pegasuspy.egg-info/PKG-INFO
2020-06-10T02:19:46,622   reading manifest file 'pegasuspy.egg-info/SOURCES.txt'
2020-06-10T02:19:46,631   reading manifest template 'MANIFEST.in'
2020-06-10T02:19:46,633   warning: no previously-included files found matching 'tests/*'
2020-06-10T02:19:46,635   warning: no previously-included files found matching 'docs/**'
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2020-06-10T02:19:46,646   warning: no previously-included files found matching 'pyproject.toml'
2020-06-10T02:19:46,648   warning: no previously-included files found matching '.*'
2020-06-10T02:19:46,663   writing manifest file 'pegasuspy.egg-info/SOURCES.txt'
2020-06-10T02:19:46,666   Copying pegasuspy.egg-info to build/bdist.linux-armv7l/wheel/pegasuspy-0.18.0b1-py3.5.egg-info
2020-06-10T02:19:46,700   running install_scripts
2020-06-10T02:19:46,878   creating build/bdist.linux-armv7l/wheel/pegasuspy-0.18.0b1.dist-info/WHEEL
2020-06-10T02:19:47,486   Building wheel for pegasuspy (setup.py): finished with status 'done'
2020-06-10T02:19:47,493   Created wheel for pegasuspy: filename=pegasuspy-0.18.0b1-py3-none-any.whl size=142056 sha256=78e8c2f76ad47d74b26c2af7dc11c657e0e04e8edebab68ed9b5abc44c9a1044
2020-06-10T02:19:47,494   Stored in directory: /tmp/pip-ephem-wheel-cache-4ikh355r/wheels/69/c7/4c/e2fd107e14aff2526c3d394f3c18498d1ae6ffd0d89d6f083c
2020-06-10T02:19:47,498 Successfully built pegasuspy
2020-06-10T02:19:47,530 Removed build tracker: '/tmp/pip-req-tracker-77kct8jw'