2020-06-14T16:43:03 Created temporary directory: /tmp/pip-ephem-wheel-cache-ml4pj_g3
2020-06-14T16:43:03 Created temporary directory: /tmp/pip-req-tracker-47ddbotj
2020-06-14T16:43:03 Created requirements tracker '/tmp/pip-req-tracker-47ddbotj'
2020-06-14T16:43:03 Created temporary directory: /tmp/pip-wheel-hb99dm4o
2020-06-14T16:43:03 Collecting scipion-em==3.0.1a1
2020-06-14T16:43:03   1 location(s) to search for versions of scipion-em:
2020-06-14T16:43:03   * https://pypi.org/simple/scipion-em/
2020-06-14T16:43:03   Getting page https://pypi.org/simple/scipion-em/
2020-06-14T16:43:03   Analyzing links from page https://pypi.org/simple/scipion-em/
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/b5/df/c64fcba3737ffd42751f1803c492092fa8045c846ee24e38bd6631108dc3/scipion-em-1a0.tar.gz#sha256=043179e8637d658022f3ad8a24699939385f7e81cf7742a558db52370307bcec (from https://pypi.org/simple/scipion-em/), version: 1a0
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/35/4f/4c8bd086faa8a6a10537ce1ae0340e904ac07d575122120f686dad88db69/scipion-em-1.0.0.tar.gz#sha256=1a1ba59beea4950c3d4f1f1350e909f30eeb4cf0d16ac2f38f9a6eda1baf3b3b (from https://pypi.org/simple/scipion-em/), version: 1.0.0
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/11/51/4ea77fe73a7e0f3bea062fa0828f8575f5d752a739651c620090de6852a3/scipion-em-1.0.1.tar.gz#sha256=8bf8f85cf2ad1c35804d3be09b3056db0ff418dec9020de79502a41b55dbf00a (from https://pypi.org/simple/scipion-em/), version: 1.0.1
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/bc/af/1ffeb08a3ce9a69dc4bbb6154e78d1c64ce2946edef8719a0b084326dc44/scipion-em-1.0.2.tar.gz#sha256=e26fab847003b002f5869242d8712ce800a8f1fa38009c121c60eb73001d004f (from https://pypi.org/simple/scipion-em/), version: 1.0.2
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/e2/74/7627acc6f4250ac473d2d06e882ae92da118c04d6a42a719d4723c828d1d/scipion-em-3.0.0.tar.gz#sha256=db8f435ef6e8d19ae6af620ce9a516bc54add595a30ac33070d9231e231facb4 (from https://pypi.org/simple/scipion-em/), version: 3.0.0
2020-06-14T16:43:04     Found link https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz#sha256=fa0e1793f0e739a3e15e27cf3f5a2935a53fde79ac4576e842ec43d3540f7242 (from https://pypi.org/simple/scipion-em/), version: 3.0.1a1
2020-06-14T16:43:04   Using version 3.0.1a1 (newest of versions: 3.0.1a1)
2020-06-14T16:43:04   Created temporary directory: /tmp/pip-unpack-wd5nykq9
2020-06-14T16:43:04   Downloading https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz (285kB)
2020-06-14T16:43:04   Downloading from URL https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz#sha256=fa0e1793f0e739a3e15e27cf3f5a2935a53fde79ac4576e842ec43d3540f7242 (from https://pypi.org/simple/scipion-em/)
2020-06-14T16:43:05   Added scipion-em==3.0.1a1 from https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz#sha256=fa0e1793f0e739a3e15e27cf3f5a2935a53fde79ac4576e842ec43d3540f7242 to build tracker '/tmp/pip-req-tracker-47ddbotj'
2020-06-14T16:43:05     Running setup.py (path:/tmp/pip-wheel-hb99dm4o/scipion-em/setup.py) egg_info for package scipion-em
2020-06-14T16:43:05     Running command python setup.py egg_info
2020-06-14T16:43:07     running egg_info
2020-06-14T16:43:07     creating pip-egg-info/scipion_em.egg-info
2020-06-14T16:43:07     writing pip-egg-info/scipion_em.egg-info/PKG-INFO
2020-06-14T16:43:07     writing requirements to pip-egg-info/scipion_em.egg-info/requires.txt
2020-06-14T16:43:07     writing entry points to pip-egg-info/scipion_em.egg-info/entry_points.txt
2020-06-14T16:43:07     writing dependency_links to pip-egg-info/scipion_em.egg-info/dependency_links.txt
2020-06-14T16:43:07     writing top-level names to pip-egg-info/scipion_em.egg-info/top_level.txt
2020-06-14T16:43:07     writing manifest file 'pip-egg-info/scipion_em.egg-info/SOURCES.txt'
2020-06-14T16:43:07     reading manifest file 'pip-egg-info/scipion_em.egg-info/SOURCES.txt'
2020-06-14T16:43:07     reading manifest template 'MANIFEST.in'
2020-06-14T16:43:07     writing manifest file 'pip-egg-info/scipion_em.egg-info/SOURCES.txt'
2020-06-14T16:43:07   Source in /tmp/pip-wheel-hb99dm4o/scipion-em has version 3.0.1a1, which satisfies requirement scipion-em==3.0.1a1 from https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz#sha256=fa0e1793f0e739a3e15e27cf3f5a2935a53fde79ac4576e842ec43d3540f7242
2020-06-14T16:43:07   Removed scipion-em==3.0.1a1 from https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz#sha256=fa0e1793f0e739a3e15e27cf3f5a2935a53fde79ac4576e842ec43d3540f7242 from build tracker '/tmp/pip-req-tracker-47ddbotj'
2020-06-14T16:43:07 Building wheels for collected packages: scipion-em
2020-06-14T16:43:07   Created temporary directory: /tmp/pip-wheel-1wlzmppl
2020-06-14T16:43:07   Building wheel for scipion-em (setup.py): started
2020-06-14T16:43:07   Destination directory: /tmp/pip-wheel-1wlzmppl
2020-06-14T16:43:07   Running command /usr/bin/python3 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-wheel-hb99dm4o/scipion-em/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1wlzmppl
2020-06-14T16:43:09   running bdist_wheel
2020-06-14T16:43:09   running build
2020-06-14T16:43:09   running build_py
2020-06-14T16:43:10   creating build
2020-06-14T16:43:10   creating build/lib
2020-06-14T16:43:10   creating build/lib/pwem
2020-06-14T16:43:10   copying pwem/bibtex.py -> build/lib/pwem
2020-06-14T16:43:10   copying pwem/constants.py -> build/lib/pwem
2020-06-14T16:43:10   copying pwem/utils.py -> build/lib/pwem
2020-06-14T16:43:10   copying pwem/__init__.py -> build/lib/pwem
2020-06-14T16:43:10   creating build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/symmetry.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/transformations.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/headers.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/sequence.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/utils.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/__init__.py -> build/lib/pwem/convert
2020-06-14T16:43:10   copying pwem/convert/atom_struct.py -> build/lib/pwem/convert
2020-06-14T16:43:10   creating build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_particles.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_micrographs.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_sets.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_movies.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_extract_coordinates.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_ctf_assign.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_batch.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_align_movies.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_tests.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_pdf_report.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_alignment_assign.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_3d.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_particles_picking.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_2d.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_origin_sampling_volume.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_create_stream_data.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/parallel.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_tiltpairs.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/protocol_classes_consensus.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   copying pwem/protocols/__init__.py -> build/lib/pwem/protocols
2020-06-14T16:43:10   creating build/lib/pwem/tests
2020-06-14T16:43:10   copying pwem/tests/__init__.py -> build/lib/pwem/tests
2020-06-14T16:43:10   creating build/lib/pwem/objects
2020-06-14T16:43:10   copying pwem/objects/data_tiltpairs.py -> build/lib/pwem/objects
2020-06-14T16:43:10   copying pwem/objects/data.py -> build/lib/pwem/objects
2020-06-14T16:43:10   copying pwem/objects/__init__.py -> build/lib/pwem/objects
2020-06-14T16:43:10   creating build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_chimera.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/views.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_localres.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewers_data.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/filehandlers.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_pdf.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_fsc.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_base.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_vmd.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_sequence.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewer_volumes.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/viewers_protocols.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/plotter.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/showj.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   copying pwem/viewers/__init__.py -> build/lib/pwem/viewers
2020-06-14T16:43:10   creating build/lib/pwem/emlib
2020-06-14T16:43:10   copying pwem/emlib/lib.py -> build/lib/pwem/emlib
2020-06-14T16:43:10   copying pwem/emlib/__init__.py -> build/lib/pwem/emlib
2020-06-14T16:43:10   copying pwem/emlib/_libNone.py -> build/lib/pwem/emlib
2020-06-14T16:43:10   creating build/lib/pwem/wizards
2020-06-14T16:43:10   copying pwem/wizards/wizards.py -> build/lib/pwem/wizards
2020-06-14T16:43:10   copying pwem/wizards/wizard.py -> build/lib/pwem/wizards
2020-06-14T16:43:10   copying pwem/wizards/__init__.py -> build/lib/pwem/wizards
2020-06-14T16:43:10   creating build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/particles.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/masks.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/micrographs.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/coordinates.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/images.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/volumes.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/base.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/dataimport.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/sequence.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/ctfs.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   copying pwem/protocols/protocol_import/__init__.py -> build/lib/pwem/protocols/protocol_import
2020-06-14T16:43:10   creating build/lib/pwem/protocols/protocol_export
2020-06-14T16:43:10   copying pwem/protocols/protocol_export/protocol_export_DB.py -> build/lib/pwem/protocols/protocol_export
2020-06-14T16:43:10   copying pwem/protocols/protocol_export/__init__.py -> build/lib/pwem/protocols/protocol_export
2020-06-14T16:43:10   creating build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_xmipp.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_parallel_gpu_queue.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_mixed.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_mixed_large.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_initialvolume.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_modeling.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   copying pwem/tests/workflows/__init__.py -> build/lib/pwem/tests/workflows
2020-06-14T16:43:10   creating build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_sequence.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_ctfs.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_assign_orig.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_coords.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_micrographs.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_particles.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_notifier.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_movies.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_masks.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocol_export2DB.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_sets.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_extract_particles.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/__init__.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   copying pwem/tests/protocols/test_protocols_import_volumes.py -> build/lib/pwem/tests/protocols
2020-06-14T16:43:10   creating build/lib/pwem/tests/data
2020-06-14T16:43:10   copying pwem/tests/data/test_symmetry.py -> build/lib/pwem/tests/data
2020-06-14T16:43:10   copying pwem/tests/data/test_metadata.py -> build/lib/pwem/tests/data
2020-06-14T16:43:10   copying pwem/tests/data/test_convert_atom_struct.py -> build/lib/pwem/tests/data
2020-06-14T16:43:10   copying pwem/tests/data/__init__.py -> build/lib/pwem/tests/data
2020-06-14T16:43:10   copying pwem/tests/data/test_data.py -> build/lib/pwem/tests/data
2020-06-14T16:43:10   creating build/lib/pwem/emlib/image
2020-06-14T16:43:10   copying pwem/emlib/image/image_handler.py -> build/lib/pwem/emlib/image
2020-06-14T16:43:10   copying pwem/emlib/image/__init__.py -> build/lib/pwem/emlib/image
2020-06-14T16:43:10   creating build/lib/pwem/emlib/metadata
2020-06-14T16:43:10   copying pwem/emlib/metadata/utils.py -> build/lib/pwem/emlib/metadata
2020-06-14T16:43:10   copying pwem/emlib/metadata/__init__.py -> build/lib/pwem/emlib/metadata
2020-06-14T16:43:10   creating build/lib/pwem/templates
2020-06-14T16:43:10   copying pwem/templates/nglviewer.html -> build/lib/pwem/templates
2020-06-14T16:43:10   copying pwem/templates/demo.json.template -> build/lib/pwem/templates
2020-06-14T16:43:10   installing to build/bdist.linux-armv7l/wheel
2020-06-14T16:43:10   running install
2020-06-14T16:43:10   running install_lib
2020-06-14T16:43:10   creating build/bdist.linux-armv7l
2020-06-14T16:43:10   creating build/bdist.linux-armv7l/wheel
2020-06-14T16:43:10   creating build/bdist.linux-armv7l/wheel/pwem
2020-06-14T16:43:10   creating build/bdist.linux-armv7l/wheel/pwem/templates
2020-06-14T16:43:10   copying build/lib/pwem/templates/nglviewer.html -> build/bdist.linux-armv7l/wheel/pwem/templates
2020-06-14T16:43:10   copying build/lib/pwem/templates/demo.json.template -> build/bdist.linux-armv7l/wheel/pwem/templates
2020-06-14T16:43:10   creating build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/symmetry.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/transformations.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/headers.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/sequence.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/utils.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/convert/atom_struct.py -> build/bdist.linux-armv7l/wheel/pwem/convert
2020-06-14T16:43:10   copying build/lib/pwem/bibtex.py -> build/bdist.linux-armv7l/wheel/pwem
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_particles.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_micrographs.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_sets.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_movies.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_extract_coordinates.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_ctf_assign.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_batch.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_align_movies.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_tests.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_pdf_report.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_3d.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_particles_picking.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/particles.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/masks.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/micrographs.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/coordinates.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/images.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/volumes.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/base.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/dataimport.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/sequence.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/ctfs.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_import/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_export
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_export/protocol_export_DB.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_export
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_export/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_export
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_2d.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_origin_sampling_volume.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_create_stream_data.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/parallel.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_tiltpairs.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/protocol_classes_consensus.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   copying build/lib/pwem/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/protocols
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/tests
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_xmipp.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_parallel_gpu_queue.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_mixed.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_mixed_large.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_initialvolume.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_modeling.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   copying build/lib/pwem/tests/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/tests/workflows
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_sequence.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_ctfs.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_assign_orig.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_coords.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_micrographs.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_particles.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_notifier.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_movies.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_masks.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocol_export2DB.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_sets.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_extract_particles.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   copying build/lib/pwem/tests/protocols/test_protocols_import_volumes.py -> build/bdist.linux-armv7l/wheel/pwem/tests/protocols
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/data/test_symmetry.py -> build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/data/test_metadata.py -> build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/data/test_convert_atom_struct.py -> build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/data/test_data.py -> build/bdist.linux-armv7l/wheel/pwem/tests/data
2020-06-14T16:43:11   copying build/lib/pwem/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/tests
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/objects
2020-06-14T16:43:11   copying build/lib/pwem/objects/data_tiltpairs.py -> build/bdist.linux-armv7l/wheel/pwem/objects
2020-06-14T16:43:11   copying build/lib/pwem/objects/data.py -> build/bdist.linux-armv7l/wheel/pwem/objects
2020-06-14T16:43:11   copying build/lib/pwem/objects/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/objects
2020-06-14T16:43:11   copying build/lib/pwem/constants.py -> build/bdist.linux-armv7l/wheel/pwem
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_chimera.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/views.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_localres.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/filehandlers.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_pdf.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_fsc.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_vmd.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_sequence.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewer_volumes.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/viewers_protocols.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/showj.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   copying build/lib/pwem/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/viewers
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/emlib
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/emlib/image
2020-06-14T16:43:11   copying build/lib/pwem/emlib/image/image_handler.py -> build/bdist.linux-armv7l/wheel/pwem/emlib/image
2020-06-14T16:43:11   copying build/lib/pwem/emlib/image/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/emlib/image
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/emlib/metadata
2020-06-14T16:43:11   copying build/lib/pwem/emlib/metadata/utils.py -> build/bdist.linux-armv7l/wheel/pwem/emlib/metadata
2020-06-14T16:43:11   copying build/lib/pwem/emlib/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/emlib/metadata
2020-06-14T16:43:11   copying build/lib/pwem/emlib/lib.py -> build/bdist.linux-armv7l/wheel/pwem/emlib
2020-06-14T16:43:11   copying build/lib/pwem/emlib/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/emlib
2020-06-14T16:43:11   copying build/lib/pwem/emlib/_libNone.py -> build/bdist.linux-armv7l/wheel/pwem/emlib
2020-06-14T16:43:11   copying build/lib/pwem/utils.py -> build/bdist.linux-armv7l/wheel/pwem
2020-06-14T16:43:11   copying build/lib/pwem/__init__.py -> build/bdist.linux-armv7l/wheel/pwem
2020-06-14T16:43:11   creating build/bdist.linux-armv7l/wheel/pwem/wizards
2020-06-14T16:43:11   copying build/lib/pwem/wizards/wizards.py -> build/bdist.linux-armv7l/wheel/pwem/wizards
2020-06-14T16:43:11   copying build/lib/pwem/wizards/wizard.py -> build/bdist.linux-armv7l/wheel/pwem/wizards
2020-06-14T16:43:11   copying build/lib/pwem/wizards/__init__.py -> build/bdist.linux-armv7l/wheel/pwem/wizards
2020-06-14T16:43:11   running install_egg_info
2020-06-14T16:43:11   running egg_info
2020-06-14T16:43:11   writing top-level names to scipion_em.egg-info/top_level.txt
2020-06-14T16:43:11   writing entry points to scipion_em.egg-info/entry_points.txt
2020-06-14T16:43:11   writing requirements to scipion_em.egg-info/requires.txt
2020-06-14T16:43:11   writing scipion_em.egg-info/PKG-INFO
2020-06-14T16:43:11   writing dependency_links to scipion_em.egg-info/dependency_links.txt
2020-06-14T16:43:11   reading manifest file 'scipion_em.egg-info/SOURCES.txt'
2020-06-14T16:43:11   reading manifest template 'MANIFEST.in'
2020-06-14T16:43:11   writing manifest file 'scipion_em.egg-info/SOURCES.txt'
2020-06-14T16:43:11   Copying scipion_em.egg-info to build/bdist.linux-armv7l/wheel/scipion_em-3.0.1a1-py3.5.egg-info
2020-06-14T16:43:11   running install_scripts
2020-06-14T16:43:12   creating build/bdist.linux-armv7l/wheel/scipion_em-3.0.1a1.dist-info/WHEEL
2020-06-14T16:43:12   Building wheel for scipion-em (setup.py): finished with status 'done'
2020-06-14T16:43:12   Stored in directory: /tmp/tmphqlyk81x
2020-06-14T16:43:12 Successfully built scipion-em
2020-06-14T16:43:12 Cleaning up...
2020-06-14T16:43:12   Removing source in /tmp/pip-wheel-hb99dm4o/scipion-em
2020-06-14T16:43:13 Removed build tracker '/tmp/pip-req-tracker-47ddbotj'