2020-06-14T18:41:14,218 Created temporary directory: /tmp/pip-ephem-wheel-cache-ldcr93od
2020-06-14T18:41:14,222 Created temporary directory: /tmp/pip-req-tracker-g8fcsqln
2020-06-14T18:41:14,223 Initialized build tracking at /tmp/pip-req-tracker-g8fcsqln
2020-06-14T18:41:14,224 Created build tracker: /tmp/pip-req-tracker-g8fcsqln
2020-06-14T18:41:14,224 Entered build tracker: /tmp/pip-req-tracker-g8fcsqln
2020-06-14T18:41:14,227 Created temporary directory: /tmp/pip-wheel-xwxmqz6t
2020-06-14T18:41:14,246 1 location(s) to search for versions of py-popgen:
2020-06-14T18:41:14,246 * https://pypi.org/simple/py-popgen/
2020-06-14T18:41:14,247 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2020-06-14T18:41:14,248 Getting page https://pypi.org/simple/py-popgen/
2020-06-14T18:41:14,251 Found index url https://pypi.org/simple
2020-06-14T18:41:14,488   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz#sha256=c95c719e8e1536b59b32fd617118d8374e8b4438ec114d1fc48704ccf9ccaf9a (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2020-06-14T18:41:14,490   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz#sha256=150557350080571d2db292b647478c80bfe7bfd81a3750db368276e613fae36d (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2020-06-14T18:41:14,494   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz#sha256=e27fb4877027f544d95ae0c11406d08ea69239b5f67b563d2a17cc82d5fa0ea3 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2020-06-14T18:41:14,498   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz#sha256=f2808c99f4719d9e5a439cd4169a043dc77b53a8c3211a39623a48128a645c32 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2020-06-14T18:41:14,502   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz#sha256=29493332c6131f297c20575b30e7a15ee2782dd517cb6bd7c3e25bd06f38e37e (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2020-06-14T18:41:14,507   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz#sha256=f96e091bdf05b28954c4f0550adb2dee824cde8881c00616498a6f3ada14ab0b (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2020-06-14T18:41:14,511   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz#sha256=3d18d3360fdc4296a01f3c530757723b4ffe97bed9776e54f643b480e9439bcc (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2020-06-14T18:41:14,515   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz#sha256=160d2c545729a8ac81d7146baff2f48df6cc8728161ffd534462e7d93343fb21 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2020-06-14T18:41:14,519   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz#sha256=c6a4cb6f8f2064a6188888dc2e1804c9abdb338f23a23c057cdcf9ca2e410867 (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2020-06-14T18:41:14,523   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz#sha256=7278deed48de6eac28aaef32c6df010cdf81403dd86400ab5923da84d95ea1eb (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2020-06-14T18:41:14,535 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2020-06-14T18:41:14,542 Using version 0.1.8 (newest of versions: 0.1.8)
2020-06-14T18:41:14,550 Collecting py-popgen==0.1.8
2020-06-14T18:41:14,555   Created temporary directory: /tmp/pip-unpack-iyq807nz
2020-06-14T18:41:14,636   Downloading py-popgen-0.1.8.tar.gz (18.6 MB)
2020-06-14T18:41:23,155   Added py-popgen==0.1.8 from https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz#sha256=7278deed48de6eac28aaef32c6df010cdf81403dd86400ab5923da84d95ea1eb to build tracker '/tmp/pip-req-tracker-g8fcsqln'
2020-06-14T18:41:23,157     Running setup.py (path:/tmp/pip-wheel-xwxmqz6t/py-popgen/setup.py) egg_info for package py-popgen
2020-06-14T18:41:23,158     Created temporary directory: /tmp/pip-pip-egg-info-d22vkssb
2020-06-14T18:41:23,159     Running command python setup.py egg_info
2020-06-14T18:41:25,108     running egg_info
2020-06-14T18:41:25,113     creating /tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info
2020-06-14T18:41:25,115     writing /tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/PKG-INFO
2020-06-14T18:41:25,120     writing dependency_links to /tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/dependency_links.txt
2020-06-14T18:41:25,124     writing requirements to /tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/requires.txt
2020-06-14T18:41:25,127     writing top-level names to /tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/top_level.txt
2020-06-14T18:41:25,131     writing manifest file '/tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/SOURCES.txt'
2020-06-14T18:41:25,507     reading manifest file '/tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/SOURCES.txt'
2020-06-14T18:41:25,511     reading manifest template 'MANIFEST.in'
2020-06-14T18:41:25,539     writing manifest file '/tmp/pip-pip-egg-info-d22vkssb/py_popgen.egg-info/SOURCES.txt'
2020-06-14T18:41:25,686   Source in /tmp/pip-wheel-xwxmqz6t/py-popgen has version 0.1.8, which satisfies requirement py-popgen==0.1.8 from https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz#sha256=7278deed48de6eac28aaef32c6df010cdf81403dd86400ab5923da84d95ea1eb
2020-06-14T18:41:25,687   Removed py-popgen==0.1.8 from https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz#sha256=7278deed48de6eac28aaef32c6df010cdf81403dd86400ab5923da84d95ea1eb from build tracker '/tmp/pip-req-tracker-g8fcsqln'
2020-06-14T18:41:25,698 Building wheels for collected packages: py-popgen
2020-06-14T18:41:25,713   Created temporary directory: /tmp/pip-wheel-fsx11lhv
2020-06-14T18:41:25,715   Building wheel for py-popgen (setup.py): started
2020-06-14T18:41:25,716   Destination directory: /tmp/pip-wheel-fsx11lhv
2020-06-14T18:41:25,716   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xwxmqz6t/py-popgen/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xwxmqz6t/py-popgen/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fsx11lhv
2020-06-14T18:41:27,768   running bdist_wheel
2020-06-14T18:41:27,782   running build
2020-06-14T18:41:27,782   running build_py
2020-06-14T18:41:28,092   creating build
2020-06-14T18:41:28,093   creating build/lib
2020-06-14T18:41:28,094   creating build/lib/pgpipe
2020-06-14T18:41:28,097   copying pgpipe/vcftools.py -> build/lib/pgpipe
2020-06-14T18:41:28,106   copying pgpipe/vcf_filter_vcftools.py -> build/lib/pgpipe
2020-06-14T18:41:28,114   copying pgpipe/admixture.py -> build/lib/pgpipe
2020-06-14T18:41:28,121   copying pgpipe/model_sampler.py -> build/lib/pgpipe
2020-06-14T18:41:28,128   copying pgpipe/eigenstrat_fstats.py -> build/lib/pgpipe
2020-06-14T18:41:28,135   copying pgpipe/vcf_to_treemix.py -> build/lib/pgpipe
2020-06-14T18:41:28,141   copying pgpipe/subtract_bed.py -> build/lib/pgpipe
2020-06-14T18:41:28,146   copying pgpipe/admixtools.py -> build/lib/pgpipe
2020-06-14T18:41:28,154   copying pgpipe/parse_functions.py -> build/lib/pgpipe
2020-06-14T18:41:28,161   copying pgpipe/site_stats.py -> build/lib/pgpipe
2020-06-14T18:41:28,167   copying pgpipe/vcf_ref_to_seq.py -> build/lib/pgpipe
2020-06-14T18:41:28,173   copying pgpipe/genome_region.py -> build/lib/pgpipe
2020-06-14T18:41:28,179   copying pgpipe/vcf_calc.py -> build/lib/pgpipe
2020-06-14T18:41:28,186   copying pgpipe/graph_plotter.py -> build/lib/pgpipe
2020-06-14T18:41:28,191   copying pgpipe/model.py -> build/lib/pgpipe
2020-06-14T18:41:28,198   copying pgpipe/vcf_filter.py -> build/lib/pgpipe
2020-06-14T18:41:28,208   copying pgpipe/plink_ld.py -> build/lib/pgpipe
2020-06-14T18:41:28,215   copying pgpipe/vcf_utilities.py -> build/lib/pgpipe
2020-06-14T18:41:28,222   copying pgpipe/model_creator.py -> build/lib/pgpipe
2020-06-14T18:41:28,229   copying pgpipe/vcf_split.py -> build/lib/pgpipe
2020-06-14T18:41:28,237   copying pgpipe/ima_priors.py -> build/lib/pgpipe
2020-06-14T18:41:28,243   copying pgpipe/informative_loci_filter.py -> build/lib/pgpipe
2020-06-14T18:41:28,249   copying pgpipe/ima_to_treemix.py -> build/lib/pgpipe
2020-06-14T18:41:28,254   copying pgpipe/fasta_utilities.py -> build/lib/pgpipe
2020-06-14T18:41:28,258   copying pgpipe/vcf_phase.py -> build/lib/pgpipe
2020-06-14T18:41:28,266   copying pgpipe/plink.py -> build/lib/pgpipe
2020-06-14T18:41:28,272   copying pgpipe/vcf_split_pysam.py -> build/lib/pgpipe
2020-06-14T18:41:28,278   copying pgpipe/ima3_wrapper.py -> build/lib/pgpipe
2020-06-14T18:41:28,283   copying pgpipe/misc.py -> build/lib/pgpipe
2020-06-14T18:41:28,287   copying pgpipe/shapeit.py -> build/lib/pgpipe
2020-06-14T18:41:28,292   copying pgpipe/convert.py -> build/lib/pgpipe
2020-06-14T18:41:28,297   copying pgpipe/bedtools.py -> build/lib/pgpipe
2020-06-14T18:41:28,302   copying pgpipe/bcftools.py -> build/lib/pgpipe
2020-06-14T18:41:28,309   copying pgpipe/filter_single_vcf.py -> build/lib/pgpipe
2020-06-14T18:41:28,326   copying pgpipe/fasta.py -> build/lib/pgpipe
2020-06-14T18:41:28,327   copying pgpipe/extend_loci.py -> build/lib/pgpipe
2020-06-14T18:41:28,328   copying pgpipe/get_nonmissing_chunks.py -> build/lib/pgpipe
2020-06-14T18:41:28,332   copying pgpipe/__init__.py -> build/lib/pgpipe
2020-06-14T18:41:28,336   copying pgpipe/min_pop_filter.py -> build/lib/pgpipe
2020-06-14T18:41:28,340   copying pgpipe/vcf_sampler.py -> build/lib/pgpipe
2020-06-14T18:41:28,348   copying pgpipe/beagle.py -> build/lib/pgpipe
2020-06-14T18:41:28,356   copying pgpipe/logging_module.py -> build/lib/pgpipe
2020-06-14T18:41:28,361   copying pgpipe/stat_sampler.py -> build/lib/pgpipe
2020-06-14T18:41:28,367   copying pgpipe/argparse_sets.py -> build/lib/pgpipe
2020-06-14T18:41:28,371   copying pgpipe/four_gamete.py -> build/lib/pgpipe
2020-06-14T18:41:28,379   copying pgpipe/bed_utilities.py -> build/lib/pgpipe
2020-06-14T18:41:28,386   copying pgpipe/picard.py -> build/lib/pgpipe
2020-06-14T18:41:28,391   copying pgpipe/bed_invert.py -> build/lib/pgpipe
2020-06-14T18:41:28,398   copying pgpipe/vcf_reader_func.py -> build/lib/pgpipe
2020-06-14T18:41:28,407   copying pgpipe/vcf_liftover.py -> build/lib/pgpipe
2020-06-14T18:41:28,416   copying pgpipe/vcf_to_ima.py -> build/lib/pgpipe
2020-06-14T18:41:28,427   running egg_info
2020-06-14T18:41:28,453   writing py_popgen.egg-info/PKG-INFO
2020-06-14T18:41:28,457   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2020-06-14T18:41:28,461   writing requirements to py_popgen.egg-info/requires.txt
2020-06-14T18:41:28,463   writing top-level names to py_popgen.egg-info/top_level.txt
2020-06-14T18:41:28,478   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-06-14T18:41:28,485   reading manifest template 'MANIFEST.in'
2020-06-14T18:41:28,533   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2020-06-14T18:41:28,538   copying pgpipe/test_cython.c -> build/lib/pgpipe
2020-06-14T18:41:28,561   copying pgpipe/test_cython.pyx -> build/lib/pgpipe
2020-06-14T18:41:28,585   running build_scripts
2020-06-14T18:41:28,589   creating build/scripts-3.7
2020-06-14T18:41:28,593   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.7
2020-06-14T18:41:28,603   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.7
2020-06-14T18:41:28,611   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.7
2020-06-14T18:41:28,622   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.7
2020-06-14T18:41:28,628   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.7
2020-06-14T18:41:28,640   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.7
2020-06-14T18:41:28,655   copying and adjusting pgpipe/bed_utilities.py -> build/scripts-3.7
2020-06-14T18:41:28,660   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.7
2020-06-14T18:41:28,664   copying and adjusting pgpipe/convert.py -> build/scripts-3.7
2020-06-14T18:41:28,670   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.7
2020-06-14T18:41:28,678   copying and adjusting pgpipe/admixture.py -> build/scripts-3.7
2020-06-14T18:41:28,684   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.7
2020-06-14T18:41:28,691   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.7
2020-06-14T18:41:28,696   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.7
2020-06-14T18:41:28,704   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.7
2020-06-14T18:41:28,710   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.7
2020-06-14T18:41:28,716   copying pgpipe/vcf_split_pysam.py -> build/scripts-3.7
2020-06-14T18:41:28,723   copying pgpipe/bed_invert.py -> build/scripts-3.7
2020-06-14T18:41:28,727   changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755
2020-06-14T18:41:28,728   changing mode of build/scripts-3.7/vcf_calc.py from 644 to 755
2020-06-14T18:41:28,728   changing mode of build/scripts-3.7/vcf_split.py from 644 to 755
2020-06-14T18:41:28,729   changing mode of build/scripts-3.7/vcf_phase.py from 644 to 755
2020-06-14T18:41:28,730   changing mode of build/scripts-3.7/four_gamete.py from 644 to 755
2020-06-14T18:41:28,731   changing mode of build/scripts-3.7/stat_sampler.py from 644 to 755
2020-06-14T18:41:28,731   changing mode of build/scripts-3.7/bed_utilities.py from 644 to 755
2020-06-14T18:41:28,732   changing mode of build/scripts-3.7/informative_loci_filter.py from 644 to 755
2020-06-14T18:41:28,732   changing mode of build/scripts-3.7/convert.py from 644 to 755
2020-06-14T18:41:28,733   changing mode of build/scripts-3.7/vcf_to_ima.py from 644 to 755
2020-06-14T18:41:28,733   changing mode of build/scripts-3.7/admixture.py from 644 to 755
2020-06-14T18:41:28,734   changing mode of build/scripts-3.7/plink_ld.py from 644 to 755
2020-06-14T18:41:28,735   changing mode of build/scripts-3.7/ima3_wrapper.py from 644 to 755
2020-06-14T18:41:28,736   changing mode of build/scripts-3.7/eigenstrat_fstats.py from 644 to 755
2020-06-14T18:41:28,736   changing mode of build/scripts-3.7/vcf_liftover.py from 644 to 755
2020-06-14T18:41:28,737   changing mode of build/scripts-3.7/vcf_utilities.py from 644 to 755
2020-06-14T18:41:28,743   installing to build/bdist.linux-armv7l/wheel
2020-06-14T18:41:28,743   running install
2020-06-14T18:41:28,745   running install_lib
2020-06-14T18:41:28,752   creating build/bdist.linux-armv7l
2020-06-14T18:41:28,753   creating build/bdist.linux-armv7l/wheel
2020-06-14T18:41:28,759   creating build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,761   copying build/lib/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,769   copying build/lib/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,776   copying build/lib/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,782   copying build/lib/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,789   copying build/lib/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,798   copying build/lib/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,804   copying build/lib/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,808   copying build/lib/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,815   copying build/lib/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,820   copying build/lib/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,825   copying build/lib/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,831   copying build/lib/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,838   copying build/lib/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,845   copying build/lib/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,850   copying build/lib/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,861   copying build/lib/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,864   copying build/lib/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,872   copying build/lib/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,877   copying build/lib/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,883   copying build/lib/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,890   copying build/lib/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,894   copying build/lib/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,900   copying build/lib/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,904   copying build/lib/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,911   copying build/lib/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,920   copying build/lib/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,927   copying build/lib/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,933   copying build/lib/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,938   copying build/lib/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,942   copying build/lib/pgpipe/misc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,947   copying build/lib/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,968   copying build/lib/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,973   copying build/lib/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,979   copying build/lib/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,984   copying build/lib/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,994   copying build/lib/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:28,1000   copying build/lib/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,006   copying build/lib/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,011   copying build/lib/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,018   copying build/lib/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,022   copying build/lib/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,026   copying build/lib/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,033   copying build/lib/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,040   copying build/lib/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,045   copying build/lib/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,053   copying build/lib/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,058   copying build/lib/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,068   copying build/lib/pgpipe/bed_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,075   copying build/lib/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,086   copying build/lib/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,094   copying build/lib/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,101   copying build/lib/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,109   copying build/lib/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2020-06-14T18:41:29,118   running install_egg_info
2020-06-14T18:41:29,134   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.8-py3.7.egg-info
2020-06-14T18:41:29,162   running install_scripts
2020-06-14T18:41:29,274   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data
2020-06-14T18:41:29,275   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,280   copying build/scripts-3.7/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,289   copying build/scripts-3.7/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,298   copying build/scripts-3.7/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,306   copying build/scripts-3.7/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,316   copying build/scripts-3.7/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,324   copying build/scripts-3.7/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,331   copying build/scripts-3.7/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,339   copying build/scripts-3.7/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,345   copying build/scripts-3.7/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,354   copying build/scripts-3.7/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,360   copying build/scripts-3.7/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,365   copying build/scripts-3.7/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,372   copying build/scripts-3.7/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,378   copying build/scripts-3.7/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,387   copying build/scripts-3.7/bed_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,394   copying build/scripts-3.7/bed_invert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,400   copying build/scripts-3.7/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,407   copying build/scripts-3.7/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts
2020-06-14T18:41:29,415   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/admixture.py to 755
2020-06-14T18:41:29,416   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/eigenstrat_fstats.py to 755
2020-06-14T18:41:29,417   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_calc.py to 755
2020-06-14T18:41:29,417   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_filter.py to 755
2020-06-14T18:41:29,418   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/plink_ld.py to 755
2020-06-14T18:41:29,419   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_utilities.py to 755
2020-06-14T18:41:29,420   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_split.py to 755
2020-06-14T18:41:29,421   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/informative_loci_filter.py to 755
2020-06-14T18:41:29,422   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_phase.py to 755
2020-06-14T18:41:29,423   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_split_pysam.py to 755
2020-06-14T18:41:29,424   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/ima3_wrapper.py to 755
2020-06-14T18:41:29,424   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/convert.py to 755
2020-06-14T18:41:29,425   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/stat_sampler.py to 755
2020-06-14T18:41:29,426   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/four_gamete.py to 755
2020-06-14T18:41:29,427   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/bed_utilities.py to 755
2020-06-14T18:41:29,428   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/bed_invert.py to 755
2020-06-14T18:41:29,428   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_liftover.py to 755
2020-06-14T18:41:29,429   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.data/scripts/vcf_to_ima.py to 755
2020-06-14T18:41:29,488   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.8.dist-info/WHEEL
2020-06-14T18:41:29,494   creating '/tmp/pip-wheel-fsx11lhv/py_popgen-0.1.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-06-14T18:41:29,503   adding 'pgpipe/__init__.py'
2020-06-14T18:41:29,512   adding 'pgpipe/admixtools.py'
2020-06-14T18:41:29,520   adding 'pgpipe/admixture.py'
2020-06-14T18:41:29,523   adding 'pgpipe/argparse_sets.py'
2020-06-14T18:41:29,528   adding 'pgpipe/bcftools.py'
2020-06-14T18:41:29,532   adding 'pgpipe/beagle.py'
2020-06-14T18:41:29,537   adding 'pgpipe/bed_invert.py'
2020-06-14T18:41:29,541   adding 'pgpipe/bed_utilities.py'
2020-06-14T18:41:29,544   adding 'pgpipe/bedtools.py'
2020-06-14T18:41:29,548   adding 'pgpipe/convert.py'
2020-06-14T18:41:29,553   adding 'pgpipe/eigenstrat_fstats.py'
2020-06-14T18:41:29,556   adding 'pgpipe/extend_loci.py'
2020-06-14T18:41:29,558   adding 'pgpipe/fasta.py'
2020-06-14T18:41:29,561   adding 'pgpipe/fasta_utilities.py'
2020-06-14T18:41:29,564   adding 'pgpipe/filter_single_vcf.py'
2020-06-14T18:41:29,572   adding 'pgpipe/four_gamete.py'
2020-06-14T18:41:29,578   adding 'pgpipe/genome_region.py'
2020-06-14T18:41:29,581   adding 'pgpipe/get_nonmissing_chunks.py'
2020-06-14T18:41:29,584   adding 'pgpipe/graph_plotter.py'
2020-06-14T18:41:29,587   adding 'pgpipe/ima3_wrapper.py'
2020-06-14T18:41:29,590   adding 'pgpipe/ima_priors.py'
2020-06-14T18:41:29,593   adding 'pgpipe/ima_to_treemix.py'
2020-06-14T18:41:29,597   adding 'pgpipe/informative_loci_filter.py'
2020-06-14T18:41:29,599   adding 'pgpipe/logging_module.py'
2020-06-14T18:41:29,602   adding 'pgpipe/min_pop_filter.py'
2020-06-14T18:41:29,604   adding 'pgpipe/misc.py'
2020-06-14T18:41:29,608   adding 'pgpipe/model.py'
2020-06-14T18:41:29,612   adding 'pgpipe/model_creator.py'
2020-06-14T18:41:29,616   adding 'pgpipe/model_sampler.py'
2020-06-14T18:41:29,619   adding 'pgpipe/parse_functions.py'
2020-06-14T18:41:29,622   adding 'pgpipe/picard.py'
2020-06-14T18:41:29,627   adding 'pgpipe/plink.py'
2020-06-14T18:41:29,632   adding 'pgpipe/plink_ld.py'
2020-06-14T18:41:29,635   adding 'pgpipe/shapeit.py'
2020-06-14T18:41:29,638   adding 'pgpipe/site_stats.py'
2020-06-14T18:41:29,662   adding 'pgpipe/stat_sampler.py'
2020-06-14T18:41:29,665   adding 'pgpipe/subtract_bed.py'
2020-06-14T18:41:29,689   adding 'pgpipe/test_cython.c'
2020-06-14T18:41:29,694   adding 'pgpipe/test_cython.pyx'
2020-06-14T18:41:29,699   adding 'pgpipe/vcf_calc.py'
2020-06-14T18:41:29,707   adding 'pgpipe/vcf_filter.py'
2020-06-14T18:41:29,713   adding 'pgpipe/vcf_filter_vcftools.py'
2020-06-14T18:41:29,717   adding 'pgpipe/vcf_liftover.py'
2020-06-14T18:41:29,726   adding 'pgpipe/vcf_phase.py'
2020-06-14T18:41:29,732   adding 'pgpipe/vcf_reader_func.py'
2020-06-14T18:41:29,736   adding 'pgpipe/vcf_ref_to_seq.py'
2020-06-14T18:41:29,741   adding 'pgpipe/vcf_sampler.py'
2020-06-14T18:41:29,747   adding 'pgpipe/vcf_split.py'
2020-06-14T18:41:29,751   adding 'pgpipe/vcf_split_pysam.py'
2020-06-14T18:41:29,758   adding 'pgpipe/vcf_to_ima.py'
2020-06-14T18:41:29,761   adding 'pgpipe/vcf_to_treemix.py'
2020-06-14T18:41:29,765   adding 'pgpipe/vcf_utilities.py'
2020-06-14T18:41:29,771   adding 'pgpipe/vcftools.py'
2020-06-14T18:41:29,778   adding 'py_popgen-0.1.8.data/scripts/admixture.py'
2020-06-14T18:41:29,781   adding 'py_popgen-0.1.8.data/scripts/bed_invert.py'
2020-06-14T18:41:29,785   adding 'py_popgen-0.1.8.data/scripts/bed_utilities.py'
2020-06-14T18:41:29,790   adding 'py_popgen-0.1.8.data/scripts/convert.py'
2020-06-14T18:41:29,795   adding 'py_popgen-0.1.8.data/scripts/eigenstrat_fstats.py'
2020-06-14T18:41:29,804   adding 'py_popgen-0.1.8.data/scripts/four_gamete.py'
2020-06-14T18:41:29,808   adding 'py_popgen-0.1.8.data/scripts/ima3_wrapper.py'
2020-06-14T18:41:29,813   adding 'py_popgen-0.1.8.data/scripts/informative_loci_filter.py'
2020-06-14T18:41:29,818   adding 'py_popgen-0.1.8.data/scripts/plink_ld.py'
2020-06-14T18:41:29,824   adding 'py_popgen-0.1.8.data/scripts/stat_sampler.py'
2020-06-14T18:41:29,831   adding 'py_popgen-0.1.8.data/scripts/vcf_calc.py'
2020-06-14T18:41:29,840   adding 'py_popgen-0.1.8.data/scripts/vcf_filter.py'
2020-06-14T18:41:29,845   adding 'py_popgen-0.1.8.data/scripts/vcf_liftover.py'
2020-06-14T18:41:29,854   adding 'py_popgen-0.1.8.data/scripts/vcf_phase.py'
2020-06-14T18:41:29,860   adding 'py_popgen-0.1.8.data/scripts/vcf_split.py'
2020-06-14T18:41:29,865   adding 'py_popgen-0.1.8.data/scripts/vcf_split_pysam.py'
2020-06-14T18:41:29,873   adding 'py_popgen-0.1.8.data/scripts/vcf_to_ima.py'
2020-06-14T18:41:29,878   adding 'py_popgen-0.1.8.data/scripts/vcf_utilities.py'
2020-06-14T18:41:29,883   adding 'py_popgen-0.1.8.dist-info/METADATA'
2020-06-14T18:41:29,886   adding 'py_popgen-0.1.8.dist-info/WHEEL'
2020-06-14T18:41:29,888   adding 'py_popgen-0.1.8.dist-info/top_level.txt'
2020-06-14T18:41:29,891   adding 'py_popgen-0.1.8.dist-info/RECORD'
2020-06-14T18:41:29,920   removing build/bdist.linux-armv7l/wheel
2020-06-14T18:41:30,101   Building wheel for py-popgen (setup.py): finished with status 'done'
2020-06-14T18:41:30,110   Created wheel for py-popgen: filename=py_popgen-0.1.8-py3-none-any.whl size=286934 sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428
2020-06-14T18:41:30,112   Stored in directory: /tmp/pip-ephem-wheel-cache-ldcr93od/wheels/ee/c1/de/0fd53e21523099cd39b147b861ce3b9b79f0b47219e594798a
2020-06-14T18:41:30,115 Successfully built py-popgen
2020-06-14T18:41:30,174 Removed build tracker: '/tmp/pip-req-tracker-g8fcsqln'