2020-06-16T15:41:47,090 Created temporary directory: /tmp/pip-ephem-wheel-cache-lzh_feuq
2020-06-16T15:41:47,095 Created temporary directory: /tmp/pip-req-tracker-t0e31ejc
2020-06-16T15:41:47,095 Initialized build tracking at /tmp/pip-req-tracker-t0e31ejc
2020-06-16T15:41:47,096 Created build tracker: /tmp/pip-req-tracker-t0e31ejc
2020-06-16T15:41:47,096 Entered build tracker: /tmp/pip-req-tracker-t0e31ejc
2020-06-16T15:41:47,098 Created temporary directory: /tmp/pip-wheel-767hrot7
2020-06-16T15:41:47,111 1 location(s) to search for versions of jcvi:
2020-06-16T15:41:47,111 * https://pypi.org/simple/jcvi/
2020-06-16T15:41:47,112 Fetching project page and analyzing links: https://pypi.org/simple/jcvi/
2020-06-16T15:41:47,113 Getting page https://pypi.org/simple/jcvi/
2020-06-16T15:41:47,115 Found index url https://pypi.org/simple
2020-06-16T15:41:47,350   Found link https://files.pythonhosted.org/packages/9a/4f/c53e7eb012d5a42fca39fa8669a7d58f14673abbbe328b8c7e775cbf92cb/jcvi-0.4.7.tar.gz#sha256=9181ce8cf9768c1829f72c542aa801ba7d21f218e50c0776da5e1d110479d96d (from https://pypi.org/simple/jcvi/), version: 0.4.7
2020-06-16T15:41:47,351   Found link https://files.pythonhosted.org/packages/4a/9d/a6b537b0be8725d94c92546c4ba8de4d6fb97df654d7c12b6fe000049491/jcvi-0.4.8.tar.gz#sha256=8465dc624ecbb82c89ee6872ce6779634b877443ffe836124ef307cf76c6378a (from https://pypi.org/simple/jcvi/), version: 0.4.8
2020-06-16T15:41:47,352   Found link https://files.pythonhosted.org/packages/ac/53/ef3eaa2c0473a0553c6b5f2446885b3af401e53174e33d682d82e15d3795/jcvi-0.4.9.tar.gz#sha256=10a4d30f2148aa580e8e672a5aaba10e153a578b35e951ec69f2b4b679d90420 (from https://pypi.org/simple/jcvi/), version: 0.4.9
2020-06-16T15:41:47,352   Found link https://files.pythonhosted.org/packages/73/2f/d2b36ea11caca5b0edce0786aa6cc09b3b42beacebb8adee3f6db905093d/jcvi-0.4.10.tar.gz#sha256=654d0f3a2c099f9d81a4dc64af62a7d0f2e63b642b9af526bd1ef74687853418 (from https://pypi.org/simple/jcvi/), version: 0.4.10
2020-06-16T15:41:47,353   Found link https://files.pythonhosted.org/packages/0d/79/f86d87cb9f3a987a497a022422ec858d2788988f42067f773f3ca078c089/jcvi-0.4.12.tar.gz#sha256=93425f1fae03c8df20d71b3d5ceb3e8a24d979d5204b77823da54f50aeca05c4 (from https://pypi.org/simple/jcvi/), version: 0.4.12
2020-06-16T15:41:47,353   Found link https://files.pythonhosted.org/packages/95/68/96c4e56778504252a4a498c1b2f50561b73938812dd4e280a931bb3d1ecc/jcvi-0.5.1.tar.gz#sha256=2adb070783a773889a88e55724d823b0856ab490523f0a12b6d3a235fd6bac4c (from https://pypi.org/simple/jcvi/), version: 0.5.1
2020-06-16T15:41:47,354   Found link https://files.pythonhosted.org/packages/2e/58/a0e6ee654d1fbed322ab5756fe964a8a52f52850520eec0baffe6d120afc/jcvi-0.5.2.tar.gz#sha256=51a90442bb5ee9dc4a15b84816489477e593ff4c65925ab5d08ed1b8d672b984 (from https://pypi.org/simple/jcvi/), version: 0.5.2
2020-06-16T15:41:47,355   Found link https://files.pythonhosted.org/packages/21/d6/2f7d7a1ed2df03a36839a7556a663bfdc96755dc60907faa67ad03af0730/jcvi-0.5.3.tar.gz#sha256=589cc5edc564b3b6019a86422dfcb2cd44c4f59606bcf1ce310b5911d15ba21c (from https://pypi.org/simple/jcvi/), version: 0.5.3
2020-06-16T15:41:47,355   Found link https://files.pythonhosted.org/packages/fb/a1/ae58b6664ceaf79e0aa367e371e5c76e0699c0b9d7baec999e3d3a2e7052/jcvi-0.5.5.tar.gz#sha256=82e55a04126695d7c88d0d2516fcff9c8e69272bb733ce05ff0c55173253bc20 (from https://pypi.org/simple/jcvi/), version: 0.5.5
2020-06-16T15:41:47,356   Found link https://files.pythonhosted.org/packages/f6/8a/d35b5b34516256b5e937318b5ef5582ca6e03d131826454c44289a84b7a0/jcvi-0.5.6.tar.gz#sha256=a65c2f058931ed09b9218c116840b3d20b59bc0708295f1cd596265885aa760f (from https://pypi.org/simple/jcvi/), version: 0.5.6
2020-06-16T15:41:47,356   Found link https://files.pythonhosted.org/packages/fd/d7/2739abb3779ccef74fd9f41062fa0a357b0434d3c261faa5bef044853292/jcvi-0.5.7.tar.gz#sha256=39e42dacd6bedeb4cb66d11198fc5eb67fef68ec19c0906f6ce9eae5f853b758 (from https://pypi.org/simple/jcvi/), version: 0.5.7
2020-06-16T15:41:47,357   Found link https://files.pythonhosted.org/packages/b5/e7/14df7241963f68cfef3fccd5b907c217f397cd90e83f73f4dfceedd9a4d2/jcvi-0.5.8.tar.gz#sha256=fbab5cb7b19f1c069386adb29c5e93e2422107b8fbf527fcb885f65d7559a6af (from https://pypi.org/simple/jcvi/), version: 0.5.8
2020-06-16T15:41:47,358   Found link https://files.pythonhosted.org/packages/6f/6b/65638dc603fa922672380f32d5d7e8b263cc4d0a5f2a166701b50e3a1d88/jcvi-0.5.9.tar.gz#sha256=0dd9d09881170008d4c7adaf0f8bbe2c762e353cfddc060786e5ac4b3328d9f4 (from https://pypi.org/simple/jcvi/), version: 0.5.9
2020-06-16T15:41:47,358   Found link https://files.pythonhosted.org/packages/4d/b2/77a3e0bba015cd3d3edb3bd4e7065b0090c0cf77560c24681464ab73042e/jcvi-0.6.1.tar.gz#sha256=4fb330c23d5c78c375ab7233c62c6392db439b97a9e1745912f547c8310660a9 (from https://pypi.org/simple/jcvi/), version: 0.6.1
2020-06-16T15:41:47,359   Found link https://files.pythonhosted.org/packages/3a/c3/b488edc6a7ef108636c86fd3673bcfa53a1dc5f4ad45c5c5652a29f32226/jcvi-0.6.2.tar.gz#sha256=12818ddaf7ebe1c583a3e2440b7569709370f043c54c544768affc4504a63dcd (from https://pypi.org/simple/jcvi/), version: 0.6.2
2020-06-16T15:41:47,359   Found link https://files.pythonhosted.org/packages/b1/d4/2d2d6f252243402231b000eb4d4850ed6303064f5586b00d69364c6ee60d/jcvi-0.6.6.tar.gz#sha256=720e6ffa0c846dfc3bae2560c24a8e39ed0709b0ab121c0b331cea99ae0e6d25 (from https://pypi.org/simple/jcvi/), version: 0.6.6
2020-06-16T15:41:47,360   Found link https://files.pythonhosted.org/packages/1f/0a/4d1328c1cb4244d445aad2d7009f25d1490bc6d557cc4863a4ac5c42bc62/jcvi-0.6.9.tar.gz#sha256=e8f953a834ece1a017ffb5a085c710c81ba6b3bcbc91aa794aa383abf903b5ce (from https://pypi.org/simple/jcvi/), version: 0.6.9
2020-06-16T15:41:47,361   Found link https://files.pythonhosted.org/packages/27/88/6b2048b283c8ee70456e5bc7be04251020fd9b3929df13b6850d16e78e45/jcvi-0.7.1.tar.gz#sha256=bf5bb92160bb1942b615013315404daf263da2f629b3bc141a7cb7f1dc211d3a (from https://pypi.org/simple/jcvi/), version: 0.7.1
2020-06-16T15:41:47,361   Found link https://files.pythonhosted.org/packages/c1/57/226e744b4ad8c43086b050a710cc13012fc07a881847d7cfc98f10c2a35c/jcvi-0.7.3.tar.gz#sha256=58490d9ebb986ca04e4c4bcebde55edafbf267163c15f87eb250b6b34f3866dd (from https://pypi.org/simple/jcvi/), version: 0.7.3
2020-06-16T15:41:47,362   Found link https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 (from https://pypi.org/simple/jcvi/), version: 0.7.4
2020-06-16T15:41:47,362   Found link https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 (from https://pypi.org/simple/jcvi/), version: 0.7.5
2020-06-16T15:41:47,363   Found link https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 (from https://pypi.org/simple/jcvi/), version: 0.7.6
2020-06-16T15:41:47,364   Found link https://files.pythonhosted.org/packages/e1/e7/60e9e2c221731f6c0305784ac952c431625bf7be41a39464a568f4e3b18c/jcvi-0.7.7.tar.gz#sha256=561b9800f17542b29867e71488ddbd5a8dec72e5d0024a742e5917bc36798e5f (from https://pypi.org/simple/jcvi/), version: 0.7.7
2020-06-16T15:41:47,364   Found link https://files.pythonhosted.org/packages/2f/4c/745403735f07d6f4f83d0779cbfe1b565a366c5caba854bff17970b7b524/jcvi-0.8.4.tar.gz#sha256=d326ef550fa56b45190b3f5de7c2917af9d64ace8d22592cd65ceafad10b5280 (from https://pypi.org/simple/jcvi/), version: 0.8.4
2020-06-16T15:41:47,365   Found link https://files.pythonhosted.org/packages/73/be/2308651186c01a36a08fa327be49e6f7d0190211a34d11d243fe889e6de1/jcvi-0.8.12.tar.gz#sha256=dbe6422b388f92abf806f5c21ec3fd050b6a1a5471bd459b538827e109224d8d (from https://pypi.org/simple/jcvi/), version: 0.8.12
2020-06-16T15:41:47,365   Found link https://files.pythonhosted.org/packages/80/0a/b8a9719ae0a6e42a8c3ff5156dd924001278516d2b78d243a1cfa6311c94/jcvi-0.9.6.tar.gz#sha256=eaaf422c97376c0f35b2c98c3413bbef03e925d4bf0becf492a2b4028912891e (from https://pypi.org/simple/jcvi/), version: 0.9.6
2020-06-16T15:41:47,366   Found link https://files.pythonhosted.org/packages/48/9b/0c05b8fc3e088eecea6450170681d486e8a3cde9f45a39ce62d636ae219f/jcvi-0.9.9.tar.gz#sha256=2100581bc91c94599471a22fc9401ea4b24d08186b90120ab022eda3c75ced0e (from https://pypi.org/simple/jcvi/), version: 0.9.9
2020-06-16T15:41:47,367   Found link https://files.pythonhosted.org/packages/d7/cb/84dfb1c26e0df77f01bad924c8dccc9f311951f13fa73e897b86293406e4/jcvi-0.9.10.tar.gz#sha256=1a28a16f14ed2f6e4df1a0720aa3a0aa5d7b7d855cb2ce55a65da4afb49ce721 (from https://pypi.org/simple/jcvi/), version: 0.9.10
2020-06-16T15:41:47,367   Found link https://files.pythonhosted.org/packages/f2/86/0f8df6719496e325af9c5373081b3f88e854ffdb128a1f412124011fbe23/jcvi-0.9.11.tar.gz#sha256=e7719014ebbd82107806adda6c784d73cd6ba5036289ccb2058800ad22bbad7a (from https://pypi.org/simple/jcvi/), version: 0.9.11
2020-06-16T15:41:47,368   Found link https://files.pythonhosted.org/packages/b4/fb/9aac88999c9eb01575ec8e0924df82b247b4df1e626bbc853caccff3e83e/jcvi-0.9.12.tar.gz#sha256=4ac2a5adc03c95826cf2f6359f181c7cccb8cdb6a3f02f6718b045d439a0254e (from https://pypi.org/simple/jcvi/), version: 0.9.12
2020-06-16T15:41:47,368   Found link https://files.pythonhosted.org/packages/f4/ec/5b12cd16bd7ece78e740974aa190b554e61c9ec817ecfbaf090efb715a31/jcvi-0.9.13.tar.gz#sha256=f333a091fae5d9e40c0ed7eb31064537f5e87fe4ef6c231977552938f61e7248 (from https://pypi.org/simple/jcvi/), version: 0.9.13
2020-06-16T15:41:47,369   Found link https://files.pythonhosted.org/packages/9b/4c/c454c7e965d28b1ef90b186be5502aee2460ecd242513ef7ca28ce4691e5/jcvi-0.9.14.tar.gz#sha256=90b7300ba979d41b443c0c6af6768a7bddee0ae2abd5a87a8bc90f044d75a9de (from https://pypi.org/simple/jcvi/), version: 0.9.14
2020-06-16T15:41:47,370   Found link https://files.pythonhosted.org/packages/b1/2a/6630b839be29f1d0ce2f6059ee0889eb8e65bee5c80216901f0edf3a7dd6/jcvi-1.0.1.tar.gz#sha256=2ea7b692b55485c53aba9dee58f0e218df841ea7b55454680c053ad8fee6e647 (from https://pypi.org/simple/jcvi/), version: 1.0.1
2020-06-16T15:41:47,370   Found link https://files.pythonhosted.org/packages/92/5c/f48edd25912dd836f721aba88e069567070583bea4c5e8f101d4a8d39c63/jcvi-1.0.2.tar.gz#sha256=76cb492f65c0d3766923ddbcbc0f074d32ac603428f5b34fc910fff4983ebfc9 (from https://pypi.org/simple/jcvi/), version: 1.0.2
2020-06-16T15:41:47,371   Found link https://files.pythonhosted.org/packages/bc/96/9cee88ea244fef540ca144a19c99e859102641861df833a075e3e5824aaf/jcvi-1.0.3.tar.gz#sha256=6115882020338d53058b2d35ccbc451f737cbe0205320742fc63c8c41b46d7df (from https://pypi.org/simple/jcvi/), version: 1.0.3
2020-06-16T15:41:47,371   Found link https://files.pythonhosted.org/packages/00/9a/f43fe374eb9e88c92c468fe7d834dc1a5cf7583f3c0d72646a237ea3bf74/jcvi-1.0.4.tar.gz#sha256=3d9298e43f78451f10bf731f88047da47fe8b23ba9c767b5f5158809d79295c8 (from https://pypi.org/simple/jcvi/), version: 1.0.4
2020-06-16T15:41:47,372   Found link https://files.pythonhosted.org/packages/57/a2/c4366a77f1ffacfe04a0b338c18a675d878728e89d4ef2b26ae5c15f00d3/jcvi-1.0.5.tar.gz#sha256=5dd0515541548cee07a0cbb26bec70cdea8d502fc365971c420f3b919ef3074b (from https://pypi.org/simple/jcvi/), version: 1.0.5
2020-06-16T15:41:47,373   Found link https://files.pythonhosted.org/packages/95/99/7dbf1fe691d207f09fb898775ee72afb5174253d09bf9a37978860d00b5a/jcvi-1.0.6.tar.gz#sha256=49565d9dfe7519ee58a365a2507162f1483943370a89dfdc357650bbc3540c25 (from https://pypi.org/simple/jcvi/), version: 1.0.6
2020-06-16T15:41:47,373   Found link https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 (from https://pypi.org/simple/jcvi/), version: 1.0.7
2020-06-16T15:41:47,393 Given no hashes to check 1 links for project 'jcvi': discarding no candidates
2020-06-16T15:41:47,395 Using version 1.0.7 (newest of versions: 1.0.7)
2020-06-16T15:41:47,400 Collecting jcvi==1.0.7
2020-06-16T15:41:47,404   Created temporary directory: /tmp/pip-unpack-7vtdclha
2020-06-16T15:41:47,482   Downloading jcvi-1.0.7.tar.gz (831 kB)
2020-06-16T15:41:49,134   Added jcvi==1.0.7 from https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 to build tracker '/tmp/pip-req-tracker-t0e31ejc'
2020-06-16T15:41:49,137     Running setup.py (path:/tmp/pip-wheel-767hrot7/jcvi/setup.py) egg_info for package jcvi
2020-06-16T15:41:49,139     Created temporary directory: /tmp/pip-pip-egg-info-pwo6bqxq
2020-06-16T15:41:49,140     Running command python setup.py egg_info
2020-06-16T15:41:52,089     running egg_info
2020-06-16T15:41:52,093     creating /tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info
2020-06-16T15:41:52,095     writing /tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/PKG-INFO
2020-06-16T15:41:52,102     writing dependency_links to /tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/dependency_links.txt
2020-06-16T15:41:52,107     writing requirements to /tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/requires.txt
2020-06-16T15:41:52,109     writing top-level names to /tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/top_level.txt
2020-06-16T15:41:52,112     writing manifest file '/tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/SOURCES.txt'
2020-06-16T15:41:52,157     reading manifest file '/tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/SOURCES.txt'
2020-06-16T15:41:52,160     reading manifest template 'MANIFEST.in'
2020-06-16T15:41:52,184     writing manifest file '/tmp/pip-pip-egg-info-pwo6bqxq/jcvi.egg-info/SOURCES.txt'
2020-06-16T15:41:52,187     /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing 'v1.0.7' to '1.0.7'
2020-06-16T15:41:52,187       warnings.warn(tmpl.format(**locals()))
2020-06-16T15:41:52,365   Source in /tmp/pip-wheel-767hrot7/jcvi has version 1.0.7, which satisfies requirement jcvi==1.0.7 from https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153
2020-06-16T15:41:52,367   Removed jcvi==1.0.7 from https://files.pythonhosted.org/packages/b9/81/99c5b7456aa490483fe208753894196113656e9cc69af47b39d42bf218c9/jcvi-1.0.7.tar.gz#sha256=6387cb5ae5e8e566117cdc043f87894a0108066b7ce2ce640a885537943eb153 from build tracker '/tmp/pip-req-tracker-t0e31ejc'
2020-06-16T15:41:52,372 Building wheels for collected packages: jcvi
2020-06-16T15:41:52,382   Created temporary directory: /tmp/pip-wheel-t2o9nb8f
2020-06-16T15:41:52,382   Building wheel for jcvi (setup.py): started
2020-06-16T15:41:52,383   Destination directory: /tmp/pip-wheel-t2o9nb8f
2020-06-16T15:41:52,383   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-767hrot7/jcvi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-767hrot7/jcvi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-t2o9nb8f
2020-06-16T15:41:55,070   /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:454: UserWarning: Normalizing 'v1.0.7' to '1.0.7'
2020-06-16T15:41:55,071     warnings.warn(tmpl.format(**locals()))
2020-06-16T15:41:55,169   running bdist_wheel
2020-06-16T15:41:55,178   running build
2020-06-16T15:41:55,179   running build_py
2020-06-16T15:41:55,189   creating build
2020-06-16T15:41:55,190   creating build/lib.linux-armv7l-3.7
2020-06-16T15:41:55,191   creating build/lib.linux-armv7l-3.7/jcvi
2020-06-16T15:41:55,194   copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi
2020-06-16T15:41:55,198   copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi
2020-06-16T15:41:55,205   creating build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,206   copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,212   copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,217   copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,221   copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,228   copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,234   copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,240   copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,245   copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,257   copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,263   copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,269   copying jcvi/apps/cap3.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,275   copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,281   copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,288   copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,297   copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,303   copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,310   copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,315   copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,320   copying jcvi/apps/console.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,326   copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,333   copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,338   copying jcvi/apps/tesseract.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,344   copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,350   copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,355   copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,363   copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,368   copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,377   copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps
2020-06-16T15:41:55,389   creating build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,392   copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,398   copying jcvi/utils/brewer2mpl.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,405   copying jcvi/utils/progressbar.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,412   copying jcvi/utils/counter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,417   copying jcvi/utils/natsort.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,422   copying jcvi/utils/iter.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,428   copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,435   copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,440   copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,446   copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,453   copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,458   copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,464   copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,468   copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,472   copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,477   copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,481   copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils
2020-06-16T15:41:55,490   creating build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,492   copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,497   copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,503   copying jcvi/assembly/unitig.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,509   copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,516   copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,521   copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,525   copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,536   copying jcvi/assembly/pbjelly.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,542   copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,548   copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,557   copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,564   copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,571   copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,579   copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,584   copying jcvi/assembly/bambus.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,588   copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,599   copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,604   copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,610   copying jcvi/assembly/meraculous.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,615   copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,622   copying jcvi/assembly/amos.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,629   copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,634   copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,639   copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,642   copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,650   copying jcvi/assembly/sspace.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,655   copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:55,663   creating build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,664   copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,669   copying jcvi/formats/ace.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,674   copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,685   copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,691   copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,699   copying jcvi/formats/posmap.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,705   copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,714   copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,718   copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,723   copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,728   copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,734   copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,740   copying jcvi/formats/btab.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,747   copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,762   copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,766   copying jcvi/formats/fpc.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,770   copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,779   copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,788   copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,795   copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,806   copying jcvi/formats/sbt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,812   copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,817   copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,820   copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,824   copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,828   copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,833   copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,840   copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,845   copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:55,863   creating build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,866   copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,875   copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,879   copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,885   copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,891   copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,898   copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,903   copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,911   copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,917   copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,924   copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,931   copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,936   copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,944   copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,950   copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,955   copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,963   copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,968   copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,975   copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,982   copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,988   copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:55,993   copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:56,002   copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:56,008   copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics
2020-06-16T15:41:56,018   creating build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,021   copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,028   copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,034   copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,040   copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,049   copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,054   copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,061   copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,067   copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,079   copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,084   copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation
2020-06-16T15:41:56,091   creating build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,094   copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,100   copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,106   copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,111   copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,118   copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,125   copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,131   copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,139   copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,146   copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,150   copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,155   copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,159   copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms
2020-06-16T15:41:56,169   creating build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,172   copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,180   copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,186   copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,191   copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,198   copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,205   copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,218   copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,225   copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,229   copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,236   copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,240   copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara
2020-06-16T15:41:56,252   creating build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,256   copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,264   copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,270   copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,277   copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,283   copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,290   copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,296   copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,303   copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,312   copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,316   copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,319   copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,324   copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation
2020-06-16T15:41:56,335   creating build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,338   copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,344   copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,350   copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,357   copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,361   copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,367   copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,375   copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,383   copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,389   copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,395   copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,402   copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,406   copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,413   copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,426   copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,432   copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects
2020-06-16T15:41:56,439   creating build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,441   copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,445   running egg_info
2020-06-16T15:41:56,472   writing jcvi.egg-info/PKG-INFO
2020-06-16T15:41:56,477   writing dependency_links to jcvi.egg-info/dependency_links.txt
2020-06-16T15:41:56,481   writing requirements to jcvi.egg-info/requires.txt
2020-06-16T15:41:56,483   writing top-level names to jcvi.egg-info/top_level.txt
2020-06-16T15:41:56,532   reading manifest file 'jcvi.egg-info/SOURCES.txt'
2020-06-16T15:41:56,548   reading manifest template 'MANIFEST.in'
2020-06-16T15:41:56,579   writing manifest file 'jcvi.egg-info/SOURCES.txt'
2020-06-16T15:41:56,593   copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:41:56,599   copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:41:56,604   copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,611   copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,627   copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,636   copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,645   copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,655   copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,661   copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,668   copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,675   copying jcvi/utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,691   copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,696   copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,706   copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,714   copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data
2020-06-16T15:41:56,762   UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py
2020-06-16T15:41:56,765   set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.0.7'
2020-06-16T15:41:56,766   running build_ext
2020-06-16T15:41:56,923   cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c
2020-06-16T15:41:58,112   /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-767hrot7/jcvi/jcvi/assembly/chic.pyx
2020-06-16T15:41:58,113     tree = Parsing.p_module(s, pxd, full_module_name)
2020-06-16T15:42:05,952   cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c
2020-06-16T15:42:08,296   building 'jcvi.assembly.chic' extension
2020-06-16T15:42:08,298   creating build/temp.linux-armv7l-3.7
2020-06-16T15:42:08,299   creating build/temp.linux-armv7l-3.7/jcvi
2020-06-16T15:42:08,301   creating build/temp.linux-armv7l-3.7/jcvi/assembly
2020-06-16T15:42:08,303   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3
2020-06-16T15:42:08,975   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-06-16T15:42:08,976                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-06-16T15:42:08,977                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-06-16T15:42:08,977                    from jcvi/assembly/chic.c:599:
2020-06-16T15:42:08,978   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-06-16T15:42:08,978    #warning "Using deprecated NumPy API, disable it with " \
2020-06-16T15:42:08,979     ^~~~~~~
2020-06-16T15:42:16,613   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so
2020-06-16T15:42:16,865   building 'jcvi.formats.cblast' extension
2020-06-16T15:42:16,867   creating build/temp.linux-armv7l-3.7/jcvi/formats
2020-06-16T15:42:16,868   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3
2020-06-16T15:42:30,801   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so
2020-06-16T15:42:31,096   installing to build/bdist.linux-armv7l/wheel
2020-06-16T15:42:31,097   running install
2020-06-16T15:42:31,100   running install_lib
2020-06-16T15:42:31,108   creating build/bdist.linux-armv7l
2020-06-16T15:42:31,108   creating build/bdist.linux-armv7l/wheel
2020-06-16T15:42:31,112   creating build/bdist.linux-armv7l/wheel/jcvi
2020-06-16T15:42:31,117   creating build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,119   copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,125   copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,130   copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,135   copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,141   copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,147   copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,154   copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,159   copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,172   copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,178   copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,185   copying build/lib.linux-armv7l-3.7/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,193   copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,200   copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,207   copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,215   copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,221   copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,230   copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,237   copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,243   copying build/lib.linux-armv7l-3.7/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,248   copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,254   copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,259   copying build/lib.linux-armv7l-3.7/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,266   copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,274   copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,279   copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,288   copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,293   copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,301   copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps
2020-06-16T15:42:31,312   creating build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,315   copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,322   copying build/lib.linux-armv7l-3.7/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,328   copying build/lib.linux-armv7l-3.7/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,336   creating build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,337   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,353   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,362   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,367   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,375   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,383   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,388   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,402   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,407   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,412   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,419   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,427   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,432   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,442   copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data
2020-06-16T15:42:31,449   copying build/lib.linux-armv7l-3.7/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,456   copying build/lib.linux-armv7l-3.7/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,464   copying build/lib.linux-armv7l-3.7/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,470   copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,479   copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,485   copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,492   copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,500   copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,507   copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,514   copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,519   copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,523   copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,530   copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,535   copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils
2020-06-16T15:42:31,545   creating build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,547   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,554   copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,562   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,592   copying build/lib.linux-armv7l-3.7/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,600   copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,610   copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,615   copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,620   copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,630   copying build/lib.linux-armv7l-3.7/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,636   copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,642   copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,651   copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,656   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,662   copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,671   copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,679   copying build/lib.linux-armv7l-3.7/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,684   copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,696   copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,701   copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,707   copying build/lib.linux-armv7l-3.7/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,713   copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,720   copying build/lib.linux-armv7l-3.7/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,726   copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,733   copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,740   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,744   copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,754   copying build/lib.linux-armv7l-3.7/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,762   copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,768   copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly
2020-06-16T15:42:31,774   copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-06-16T15:42:31,781   creating build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,783   copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,789   copying build/lib.linux-armv7l-3.7/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,797   copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,811   copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,819   copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,826   copying build/lib.linux-armv7l-3.7/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,831   copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,840   copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,846   copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,853   copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,860   copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,867   copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,874   copying build/lib.linux-armv7l-3.7/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,880   copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,897   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,953   copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,958   copying build/lib.linux-armv7l-3.7/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,964   copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,972   copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,982   copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:31,989   copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,001   copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,007   copying build/lib.linux-armv7l-3.7/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,014   copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,020   copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,024   copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,030   copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,036   copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,041   copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,048   copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,054   copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats
2020-06-16T15:42:32,069   creating build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,072   copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,081   copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,087   copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,095   copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,103   copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,109   copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,115   copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,123   copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,129   copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,137   copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,143   copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,149   copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,156   copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,162   copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,166   copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,172   copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,176   copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,184   copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,191   copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,197   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,202   copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,209   copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,214   copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics
2020-06-16T15:42:32,224   creating build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,226   copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,234   copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,239   copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,246   copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,255   copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,261   copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,267   copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,272   copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,282   copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,287   copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation
2020-06-16T15:42:32,295   creating build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,298   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,305   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,311   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,317   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,325   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,331   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,337   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,344   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,350   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,356   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,362   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,367   copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms
2020-06-16T15:42:32,374   creating build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,376   copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,383   copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,390   copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,395   copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,404   copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,410   copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,422   copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,428   copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,433   copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,441   copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,446   copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara
2020-06-16T15:42:32,453   copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi
2020-06-16T15:42:32,460   creating build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,463   copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,470   copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,477   copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,485   copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,491   copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,497   copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,503   copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,509   copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,517   copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,523   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,527   copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,532   copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation
2020-06-16T15:42:32,541   creating build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,543   copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,548   copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,553   copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,560   copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,565   copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,571   copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,579   copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,587   copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,594   copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,602   copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,610   copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,615   copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,622   copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,634   copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,641   copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects
2020-06-16T15:42:32,645   running install_egg_info
2020-06-16T15:42:32,661   Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.0.7-py3.7.egg-info
2020-06-16T15:42:32,826   running install_scripts
2020-06-16T15:42:32,966   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2020-06-16T15:42:32,979   creating build/bdist.linux-armv7l/wheel/jcvi-1.0.7.dist-info/WHEEL
2020-06-16T15:42:32,984   creating '/tmp/pip-wheel-t2o9nb8f/jcvi-1.0.7-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-06-16T15:42:32,989   adding 'jcvi/__init__.py'
2020-06-16T15:42:32,992   adding 'jcvi/_version.py'
2020-06-16T15:42:32,995   adding 'jcvi/algorithms/__init__.py'
2020-06-16T15:42:32,997   adding 'jcvi/algorithms/__main__.py'
2020-06-16T15:42:33,001   adding 'jcvi/algorithms/ec.py'
2020-06-16T15:42:33,004   adding 'jcvi/algorithms/formula.py'
2020-06-16T15:42:33,008   adding 'jcvi/algorithms/graph.py'
2020-06-16T15:42:33,011   adding 'jcvi/algorithms/lis.py'
2020-06-16T15:42:33,017   adding 'jcvi/algorithms/lpsolve.py'
2020-06-16T15:42:33,020   adding 'jcvi/algorithms/matrix.py'
2020-06-16T15:42:33,023   adding 'jcvi/algorithms/maxsum.py'
2020-06-16T15:42:33,025   adding 'jcvi/algorithms/ml.py'
2020-06-16T15:42:33,028   adding 'jcvi/algorithms/supermap.py'
2020-06-16T15:42:33,031   adding 'jcvi/algorithms/tsp.py'
2020-06-16T15:42:33,035   adding 'jcvi/annotation/__init__.py'
2020-06-16T15:42:33,037   adding 'jcvi/annotation/__main__.py'
2020-06-16T15:42:33,043   adding 'jcvi/annotation/ahrd.py'
2020-06-16T15:42:33,046   adding 'jcvi/annotation/automaton.py'
2020-06-16T15:42:33,049   adding 'jcvi/annotation/depth.py'
2020-06-16T15:42:33,053   adding 'jcvi/annotation/evm.py'
2020-06-16T15:42:33,057   adding 'jcvi/annotation/maker.py'
2020-06-16T15:42:33,062   adding 'jcvi/annotation/pasa.py'
2020-06-16T15:42:33,066   adding 'jcvi/annotation/qc.py'
2020-06-16T15:42:33,076   adding 'jcvi/annotation/reformat.py'
2020-06-16T15:42:33,080   adding 'jcvi/annotation/stats.py'
2020-06-16T15:42:33,083   adding 'jcvi/annotation/train.py'
2020-06-16T15:42:33,088   adding 'jcvi/apps/__init__.py'
2020-06-16T15:42:33,090   adding 'jcvi/apps/__main__.py'
2020-06-16T15:42:33,095   adding 'jcvi/apps/align.py'
2020-06-16T15:42:33,109   adding 'jcvi/apps/base.py'
2020-06-16T15:42:33,114   adding 'jcvi/apps/biomart.py'
2020-06-16T15:42:33,117   adding 'jcvi/apps/blastplus.py'
2020-06-16T15:42:33,120   adding 'jcvi/apps/bowtie.py'
2020-06-16T15:42:33,123   adding 'jcvi/apps/bwa.py'
2020-06-16T15:42:33,126   adding 'jcvi/apps/cap3.py'
2020-06-16T15:42:33,129   adding 'jcvi/apps/cdhit.py'
2020-06-16T15:42:33,132   adding 'jcvi/apps/console.py'
2020-06-16T15:42:33,135   adding 'jcvi/apps/emboss.py'
2020-06-16T15:42:33,140   adding 'jcvi/apps/fetch.py'
2020-06-16T15:42:33,146   adding 'jcvi/apps/gbsubmit.py'
2020-06-16T15:42:33,149   adding 'jcvi/apps/gmap.py'
2020-06-16T15:42:33,153   adding 'jcvi/apps/grid.py'
2020-06-16T15:42:33,162   adding 'jcvi/apps/ks.py'
2020-06-16T15:42:33,165   adding 'jcvi/apps/lastz.py'
2020-06-16T15:42:33,168   adding 'jcvi/apps/mask.py'
2020-06-16T15:42:33,176   adding 'jcvi/apps/phylo.py'
2020-06-16T15:42:33,179   adding 'jcvi/apps/r.py'
2020-06-16T15:42:33,182   adding 'jcvi/apps/restriction.py'
2020-06-16T15:42:33,185   adding 'jcvi/apps/script.py'
2020-06-16T15:42:33,187   adding 'jcvi/apps/softlink.py'
2020-06-16T15:42:33,190   adding 'jcvi/apps/tesseract.py'
2020-06-16T15:42:33,198   adding 'jcvi/apps/uclust.py'
2020-06-16T15:42:33,202   adding 'jcvi/apps/uniprot.py'
2020-06-16T15:42:33,205   adding 'jcvi/apps/vecscreen.py'
2020-06-16T15:42:33,209   adding 'jcvi/assembly/__init__.py'
2020-06-16T15:42:33,212   adding 'jcvi/assembly/__main__.py'
2020-06-16T15:42:33,227   adding 'jcvi/assembly/allmaps.py'
2020-06-16T15:42:33,233   adding 'jcvi/assembly/allpaths.py'
2020-06-16T15:42:33,236   adding 'jcvi/assembly/amos.py'
2020-06-16T15:42:33,240   adding 'jcvi/assembly/automaton.py'
2020-06-16T15:42:33,243   adding 'jcvi/assembly/bambus.py'
2020-06-16T15:42:33,246   adding 'jcvi/assembly/base.py'
2020-06-16T15:42:33,254   adding 'jcvi/assembly/ca.py'
2020-06-16T15:42:33,336   adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so'
2020-06-16T15:42:33,341   adding 'jcvi/assembly/chic.pyx'
2020-06-16T15:42:33,345   adding 'jcvi/assembly/coverage.py'
2020-06-16T15:42:33,348   adding 'jcvi/assembly/gaps.py'
2020-06-16T15:42:33,354   adding 'jcvi/assembly/geneticmap.py'
2020-06-16T15:42:33,362   adding 'jcvi/assembly/goldenpath.py'
2020-06-16T15:42:33,375   adding 'jcvi/assembly/hic.py'
2020-06-16T15:42:33,385   adding 'jcvi/assembly/kmer.py'
2020-06-16T15:42:33,388   adding 'jcvi/assembly/meraculous.py'
2020-06-16T15:42:33,392   adding 'jcvi/assembly/opticalmap.py'
2020-06-16T15:42:33,399   adding 'jcvi/assembly/patch.py'
2020-06-16T15:42:33,403   adding 'jcvi/assembly/pbjelly.py'
2020-06-16T15:42:33,408   adding 'jcvi/assembly/postprocess.py'
2020-06-16T15:42:33,414   adding 'jcvi/assembly/preprocess.py'
2020-06-16T15:42:33,417   adding 'jcvi/assembly/sim.py'
2020-06-16T15:42:33,421   adding 'jcvi/assembly/soap.py'
2020-06-16T15:42:33,424   adding 'jcvi/assembly/sspace.py'
2020-06-16T15:42:33,429   adding 'jcvi/assembly/syntenypath.py'
2020-06-16T15:42:33,432   adding 'jcvi/assembly/trinity.py'
2020-06-16T15:42:33,436   adding 'jcvi/assembly/unitig.py'
2020-06-16T15:42:33,440   adding 'jcvi/compara/__init__.py'
2020-06-16T15:42:33,442   adding 'jcvi/compara/__main__.py'
2020-06-16T15:42:33,446   adding 'jcvi/compara/blastfilter.py'
2020-06-16T15:42:33,452   adding 'jcvi/compara/catalog.py'
2020-06-16T15:42:33,459   adding 'jcvi/compara/fractionation.py'
2020-06-16T15:42:33,463   adding 'jcvi/compara/pad.py'
2020-06-16T15:42:33,466   adding 'jcvi/compara/phylogeny.py'
2020-06-16T15:42:33,470   adding 'jcvi/compara/quota.py'
2020-06-16T15:42:33,473   adding 'jcvi/compara/reconstruct.py'
2020-06-16T15:42:33,477   adding 'jcvi/compara/synfind.py'
2020-06-16T15:42:33,490   adding 'jcvi/compara/synteny.py'
2020-06-16T15:42:33,496   adding 'jcvi/formats/__init__.py'
2020-06-16T15:42:33,498   adding 'jcvi/formats/__main__.py'
2020-06-16T15:42:33,501   adding 'jcvi/formats/ace.py'
2020-06-16T15:42:33,513   adding 'jcvi/formats/agp.py'
2020-06-16T15:42:33,522   adding 'jcvi/formats/base.py'
2020-06-16T15:42:33,538   adding 'jcvi/formats/bed.py'
2020-06-16T15:42:33,548   adding 'jcvi/formats/blast.py'
2020-06-16T15:42:33,551   adding 'jcvi/formats/btab.py'
2020-06-16T15:42:33,725   adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so'
2020-06-16T15:42:33,734   adding 'jcvi/formats/cblast.pyx'
2020-06-16T15:42:33,737   adding 'jcvi/formats/cdt.py'
2020-06-16T15:42:33,740   adding 'jcvi/formats/chain.py'
2020-06-16T15:42:33,743   adding 'jcvi/formats/contig.py'
2020-06-16T15:42:33,748   adding 'jcvi/formats/coords.py'
2020-06-16T15:42:33,751   adding 'jcvi/formats/excel.py'
2020-06-16T15:42:33,767   adding 'jcvi/formats/fasta.py'
2020-06-16T15:42:33,775   adding 'jcvi/formats/fastq.py'
2020-06-16T15:42:33,778   adding 'jcvi/formats/fpc.py'
2020-06-16T15:42:33,782   adding 'jcvi/formats/genbank.py'
2020-06-16T15:42:33,806   adding 'jcvi/formats/gff.py'
2020-06-16T15:42:33,810   adding 'jcvi/formats/html.py'
2020-06-16T15:42:33,813   adding 'jcvi/formats/maf.py'
2020-06-16T15:42:33,817   adding 'jcvi/formats/obo.py'
2020-06-16T15:42:33,820   adding 'jcvi/formats/pdf.py'
2020-06-16T15:42:33,823   adding 'jcvi/formats/posmap.py'
2020-06-16T15:42:33,827   adding 'jcvi/formats/psl.py'
2020-06-16T15:42:33,829   adding 'jcvi/formats/pyblast.py'
2020-06-16T15:42:33,836   adding 'jcvi/formats/sam.py'
2020-06-16T15:42:33,839   adding 'jcvi/formats/sbt.py'
2020-06-16T15:42:33,843   adding 'jcvi/formats/sizes.py'
2020-06-16T15:42:33,849   adding 'jcvi/formats/vcf.py'
2020-06-16T15:42:33,853   adding 'jcvi/graphics/__init__.py'
2020-06-16T15:42:33,856   adding 'jcvi/graphics/__main__.py'
2020-06-16T15:42:33,860   adding 'jcvi/graphics/align.py'
2020-06-16T15:42:33,865   adding 'jcvi/graphics/assembly.py'
2020-06-16T15:42:33,870   adding 'jcvi/graphics/base.py'
2020-06-16T15:42:33,874   adding 'jcvi/graphics/blastplot.py'
2020-06-16T15:42:33,880   adding 'jcvi/graphics/chromosome.py'
2020-06-16T15:42:33,883   adding 'jcvi/graphics/coverage.py'
2020-06-16T15:42:33,887   adding 'jcvi/graphics/dotplot.py'
2020-06-16T15:42:33,893   adding 'jcvi/graphics/glyph.py'
2020-06-16T15:42:33,899   adding 'jcvi/graphics/grabseeds.py'
2020-06-16T15:42:33,902   adding 'jcvi/graphics/graph.py'
2020-06-16T15:42:33,905   adding 'jcvi/graphics/heatmap.py'
2020-06-16T15:42:33,908   adding 'jcvi/graphics/histogram.py'
2020-06-16T15:42:33,912   adding 'jcvi/graphics/karyotype.py'
2020-06-16T15:42:33,919   adding 'jcvi/graphics/landscape.py'
2020-06-16T15:42:33,922   adding 'jcvi/graphics/logo.py'
2020-06-16T15:42:33,925   adding 'jcvi/graphics/mummerplot.py'
2020-06-16T15:42:33,929   adding 'jcvi/graphics/synteny.py'
2020-06-16T15:42:33,933   adding 'jcvi/graphics/table.py'
2020-06-16T15:42:33,938   adding 'jcvi/graphics/tree.py'
2020-06-16T15:42:33,941   adding 'jcvi/graphics/wheel.py'
2020-06-16T15:42:33,944   adding 'jcvi/graphics/whisker.py'
2020-06-16T15:42:33,948   adding 'jcvi/projects/__init__.py'
2020-06-16T15:42:33,950   adding 'jcvi/projects/__main__.py'
2020-06-16T15:42:33,955   adding 'jcvi/projects/age.py'
2020-06-16T15:42:33,958   adding 'jcvi/projects/alfalfa.py'
2020-06-16T15:42:33,963   adding 'jcvi/projects/allmaps.py'
2020-06-16T15:42:33,966   adding 'jcvi/projects/bites.py'
2020-06-16T15:42:33,969   adding 'jcvi/projects/heterosis.py'
2020-06-16T15:42:33,973   adding 'jcvi/projects/ies.py'
2020-06-16T15:42:33,979   adding 'jcvi/projects/misc.py'
2020-06-16T15:42:33,985   adding 'jcvi/projects/napus.py'
2020-06-16T15:42:33,989   adding 'jcvi/projects/pineapple.py'
2020-06-16T15:42:33,992   adding 'jcvi/projects/pistachio.py'
2020-06-16T15:42:34,006   adding 'jcvi/projects/str.py'
2020-06-16T15:42:34,012   adding 'jcvi/projects/synfind.py'
2020-06-16T15:42:34,018   adding 'jcvi/projects/tgbs.py'
2020-06-16T15:42:34,022   adding 'jcvi/utils/__init__.py'
2020-06-16T15:42:34,024   adding 'jcvi/utils/__main__.py'
2020-06-16T15:42:34,030   adding 'jcvi/utils/aws.py'
2020-06-16T15:42:34,034   adding 'jcvi/utils/brewer2mpl.py'
2020-06-16T15:42:34,038   adding 'jcvi/utils/cbook.py'
2020-06-16T15:42:34,041   adding 'jcvi/utils/counter.py'
2020-06-16T15:42:34,045   adding 'jcvi/utils/db.py'
2020-06-16T15:42:34,049   adding 'jcvi/utils/ez_setup.py'
2020-06-16T15:42:34,052   adding 'jcvi/utils/grouper.py'
2020-06-16T15:42:34,055   adding 'jcvi/utils/iter.py'
2020-06-16T15:42:34,059   adding 'jcvi/utils/natsort.py'
2020-06-16T15:42:34,063   adding 'jcvi/utils/orderedcollections.py'
2020-06-16T15:42:34,068   adding 'jcvi/utils/progressbar.py'
2020-06-16T15:42:34,073   adding 'jcvi/utils/range.py'
2020-06-16T15:42:34,076   adding 'jcvi/utils/table.py'
2020-06-16T15:42:34,079   adding 'jcvi/utils/taxonomy.py'
2020-06-16T15:42:34,085   adding 'jcvi/utils/webcolors.py'
2020-06-16T15:42:34,092   adding 'jcvi/utils/data/Airswing.ttf'
2020-06-16T15:42:34,119   adding 'jcvi/utils/data/Collegia.ttf'
2020-06-16T15:42:34,126   adding 'jcvi/utils/data/HookedUp.ttf'
2020-06-16T15:42:34,136   adding 'jcvi/utils/data/Humor-Sans.ttf'
2020-06-16T15:42:34,143   adding 'jcvi/utils/data/TREDs.meta.csv'
2020-06-16T15:42:34,145   adding 'jcvi/utils/data/__init__.py'
2020-06-16T15:42:34,148   adding 'jcvi/utils/data/adapters.fasta'
2020-06-16T15:42:34,150   adding 'jcvi/utils/data/blosum80.mat'
2020-06-16T15:42:34,154   adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc'
2020-06-16T15:42:34,164   adding 'jcvi/utils/data/colorbrewer_all_schemes.json'
2020-06-16T15:42:34,167   adding 'jcvi/utils/data/colorchecker.txt'
2020-06-16T15:42:34,177   adding 'jcvi/utils/data/hg38.band.txt'
2020-06-16T15:42:34,182   adding 'jcvi/utils/data/hg38.chrom.sizes'
2020-06-16T15:42:34,185   adding 'jcvi/utils/data/instance.json'
2020-06-16T15:42:34,188   adding 'jcvi/variation/__init__.py'
2020-06-16T15:42:34,191   adding 'jcvi/variation/__main__.py'
2020-06-16T15:42:34,199   adding 'jcvi/variation/cnv.py'
2020-06-16T15:42:34,203   adding 'jcvi/variation/deconvolute.py'
2020-06-16T15:42:34,206   adding 'jcvi/variation/delly.py'
2020-06-16T15:42:34,210   adding 'jcvi/variation/impute.py'
2020-06-16T15:42:34,213   adding 'jcvi/variation/phase.py'
2020-06-16T15:42:34,217   adding 'jcvi/variation/snp.py'
2020-06-16T15:42:34,228   adding 'jcvi/variation/str.py'
2020-06-16T15:42:34,231   adding 'jcvi/variation/tassel.py'
2020-06-16T15:42:34,236   adding 'jcvi-1.0.7.dist-info/LICENSE'
2020-06-16T15:42:34,239   adding 'jcvi-1.0.7.dist-info/METADATA'
2020-06-16T15:42:34,241   adding 'jcvi-1.0.7.dist-info/WHEEL'
2020-06-16T15:42:34,244   adding 'jcvi-1.0.7.dist-info/top_level.txt'
2020-06-16T15:42:34,248   adding 'jcvi-1.0.7.dist-info/RECORD'
2020-06-16T15:42:34,361   removing build/bdist.linux-armv7l/wheel
2020-06-16T15:42:34,928   Building wheel for jcvi (setup.py): finished with status 'done'
2020-06-16T15:42:34,952   Created wheel for jcvi: filename=jcvi-1.0.7-cp37-cp37m-linux_armv7l.whl size=1207296 sha256=574d94641042811b313ce6762e19bc19b97518b1d8e787a8f76e9b6eda921b1c
2020-06-16T15:42:34,953   Stored in directory: /tmp/pip-ephem-wheel-cache-lzh_feuq/wheels/4d/da/71/33eabec44f183fcca605dbadeb7aa648be0a6deeb945712c3a
2020-06-16T15:42:34,956 Successfully built jcvi
2020-06-16T15:42:35,172 Removed build tracker: '/tmp/pip-req-tracker-t0e31ejc'