2020-06-18T03:04:50,549 Created temporary directory: /tmp/pip-ephem-wheel-cache-h9wui3r_ 2020-06-18T03:04:50,553 Created temporary directory: /tmp/pip-req-tracker-zm1admlu 2020-06-18T03:04:50,554 Initialized build tracking at /tmp/pip-req-tracker-zm1admlu 2020-06-18T03:04:50,555 Created build tracker: /tmp/pip-req-tracker-zm1admlu 2020-06-18T03:04:50,555 Entered build tracker: /tmp/pip-req-tracker-zm1admlu 2020-06-18T03:04:50,556 Created temporary directory: /tmp/pip-wheel-f3t2bz__ 2020-06-18T03:04:50,573 1 location(s) to search for versions of starfish: 2020-06-18T03:04:50,573 * https://pypi.org/simple/starfish/ 2020-06-18T03:04:50,574 Fetching project page and analyzing links: https://pypi.org/simple/starfish/ 2020-06-18T03:04:50,575 Getting page https://pypi.org/simple/starfish/ 2020-06-18T03:04:50,577 Found index url https://pypi.org/simple 2020-06-18T03:04:50,824 Skipping link: No binaries permitted for starfish: 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https://files.pythonhosted.org/packages/56/9a/2de4f8a28a639433a1131f20246d1f04a6111356de7341388824ad8b61dc/starfish-0.1.9.tar.gz#sha256=02002b908572fcd2c7471475936a6c375f143d15df871399ce86ced6d7aef865 (from https://pypi.org/simple/starfish/), version: 0.1.9 2020-06-18T03:04:50,852 Found link https://files.pythonhosted.org/packages/be/9b/4215abcd20509c27b2885c6736e4640581d00b36e6e3ac178a53138c8f2e/starfish-0.1.10.tar.gz#sha256=0340e37b732e184081b150f21bbbd4eed3643ab49f74633b9c4d827bda663235 (from https://pypi.org/simple/starfish/), version: 0.1.10 2020-06-18T03:04:50,853 Found link https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz#sha256=73202fbc560519dc3b61f1f5e4341c598f6bf50b4509bb09dc22a729591a1042 (from https://pypi.org/simple/starfish/), version: 0.2.0 2020-06-18T03:04:50,854 Found link https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz#sha256=d635ef7b412b5781d6f98cd080b45098de6f3c7f7303e929b07c88b49d98ff12 (from https://pypi.org/simple/starfish/), version: 0.2.1 2020-06-18T03:04:50,876 Given no hashes to check 1 links for project 'starfish': discarding no candidates 2020-06-18T03:04:50,878 Using version 0.2.1 (newest of versions: 0.2.1) 2020-06-18T03:04:50,884 Collecting starfish==0.2.1 2020-06-18T03:04:50,887 Created temporary directory: /tmp/pip-unpack-ulids3vr 2020-06-18T03:04:50,964 Downloading starfish-0.2.1.tar.gz (241 kB) 2020-06-18T03:04:52,856 Added starfish==0.2.1 from https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz#sha256=d635ef7b412b5781d6f98cd080b45098de6f3c7f7303e929b07c88b49d98ff12 to build tracker '/tmp/pip-req-tracker-zm1admlu' 2020-06-18T03:04:52,859 Running setup.py (path:/tmp/pip-wheel-f3t2bz__/starfish/setup.py) egg_info for package starfish 2020-06-18T03:04:52,861 Created temporary directory: /tmp/pip-pip-egg-info-76vh5y24 2020-06-18T03:04:52,862 Running command python setup.py egg_info 2020-06-18T03:04:55,477 running egg_info 2020-06-18T03:04:55,482 creating /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info 2020-06-18T03:04:55,485 writing /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/PKG-INFO 2020-06-18T03:04:55,489 writing dependency_links to /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/dependency_links.txt 2020-06-18T03:04:55,492 writing entry points to /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/entry_points.txt 2020-06-18T03:04:55,496 writing requirements to /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/requires.txt 2020-06-18T03:04:55,498 writing top-level names to /tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/top_level.txt 2020-06-18T03:04:55,502 writing manifest file '/tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/SOURCES.txt' 2020-06-18T03:04:55,603 reading manifest file '/tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/SOURCES.txt' 2020-06-18T03:04:55,606 reading manifest template 'MANIFEST.in' 2020-06-18T03:04:55,710 writing manifest file '/tmp/pip-pip-egg-info-76vh5y24/starfish.egg-info/SOURCES.txt' 2020-06-18T03:04:55,835 Source in /tmp/pip-wheel-f3t2bz__/starfish has version 0.2.1, which satisfies requirement starfish==0.2.1 from https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz#sha256=d635ef7b412b5781d6f98cd080b45098de6f3c7f7303e929b07c88b49d98ff12 2020-06-18T03:04:55,836 Removed starfish==0.2.1 from https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz#sha256=d635ef7b412b5781d6f98cd080b45098de6f3c7f7303e929b07c88b49d98ff12 from build tracker '/tmp/pip-req-tracker-zm1admlu' 2020-06-18T03:04:55,840 Building wheels for collected packages: starfish 2020-06-18T03:04:55,849 Created temporary directory: /tmp/pip-wheel-6x84ueoe 2020-06-18T03:04:55,850 Building wheel for starfish (setup.py): started 2020-06-18T03:04:55,851 Destination directory: /tmp/pip-wheel-6x84ueoe 2020-06-18T03:04:55,851 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-f3t2bz__/starfish/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-f3t2bz__/starfish/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6x84ueoe 2020-06-18T03:04:58,349 running bdist_wheel 2020-06-18T03:04:58,359 running build 2020-06-18T03:04:58,360 running build_py 2020-06-18T03:04:58,373 creating build 2020-06-18T03:04:58,374 creating build/lib 2020-06-18T03:04:58,375 creating build/lib/starfish 2020-06-18T03:04:58,378 copying starfish/__init__.py -> build/lib/starfish 2020-06-18T03:04:58,382 copying starfish/spots.py -> build/lib/starfish 2020-06-18T03:04:58,386 copying starfish/__main__.py -> build/lib/starfish 2020-06-18T03:04:58,390 copying starfish/data.py -> build/lib/starfish 2020-06-18T03:04:58,396 copying starfish/types.py -> build/lib/starfish 2020-06-18T03:04:58,400 copying starfish/image.py -> build/lib/starfish 2020-06-18T03:04:58,405 copying starfish/test.py -> build/lib/starfish 2020-06-18T03:04:58,409 copying starfish/morphology.py -> build/lib/starfish 2020-06-18T03:04:58,414 copying starfish/config.py -> build/lib/starfish 2020-06-18T03:04:58,421 creating build/lib/starfish/experiment 2020-06-18T03:04:58,423 copying starfish/experiment/__init__.py -> build/lib/starfish/experiment 2020-06-18T03:04:58,427 copying starfish/experiment/builder.py -> build/lib/starfish/experiment 2020-06-18T03:04:58,432 creating build/lib/starfish/util 2020-06-18T03:04:58,434 copying starfish/util/__init__.py -> build/lib/starfish/util 2020-06-18T03:04:58,438 copying starfish/util/plot.py -> build/lib/starfish/util 2020-06-18T03:04:58,446 creating build/lib/starfish/core 2020-06-18T03:04:58,449 copying starfish/core/errors.py -> build/lib/starfish/core 2020-06-18T03:04:58,455 copying starfish/core/__init__.py -> build/lib/starfish/core 2020-06-18T03:04:58,460 copying starfish/core/_version.py -> build/lib/starfish/core 2020-06-18T03:04:58,464 copying starfish/core/_display.py -> build/lib/starfish/core 2020-06-18T03:04:58,468 copying starfish/core/starfish.py -> build/lib/starfish/core 2020-06-18T03:04:58,472 copying starfish/core/compat.py -> build/lib/starfish/core 2020-06-18T03:04:58,480 creating build/lib/starfish/test 2020-06-18T03:04:58,481 copying starfish/test/__init__.py -> build/lib/starfish/test 2020-06-18T03:04:58,488 creating build/lib/starfish/core/types 2020-06-18T03:04:58,491 copying starfish/core/types/__init__.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,497 copying starfish/core/types/_decoded_spots.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,502 copying starfish/core/types/_functionsource.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,506 copying starfish/core/types/_constants.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,510 copying starfish/core/types/_validated_table.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,514 copying starfish/core/types/_spot_attributes.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,518 copying starfish/core/types/_spot_finding_results.py -> build/lib/starfish/core/types 2020-06-18T03:04:58,524 creating build/lib/starfish/core/pipeline 2020-06-18T03:04:58,526 copying starfish/core/pipeline/__init__.py -> build/lib/starfish/core/pipeline 2020-06-18T03:04:58,531 copying starfish/core/pipeline/algorithmbase.py -> build/lib/starfish/core/pipeline 2020-06-18T03:04:58,538 creating build/lib/starfish/core/spots 2020-06-18T03:04:58,541 copying starfish/core/spots/__init__.py -> build/lib/starfish/core/spots 2020-06-18T03:04:58,547 creating build/lib/starfish/core/segmentation_mask 2020-06-18T03:04:58,550 copying starfish/core/segmentation_mask/segmentation_mask.py -> build/lib/starfish/core/segmentation_mask 2020-06-18T03:04:58,555 copying starfish/core/segmentation_mask/__init__.py -> build/lib/starfish/core/segmentation_mask 2020-06-18T03:04:58,563 creating build/lib/starfish/core/experiment 2020-06-18T03:04:58,565 copying starfish/core/experiment/__init__.py -> build/lib/starfish/core/experiment 2020-06-18T03:04:58,569 copying starfish/core/experiment/experiment.py -> build/lib/starfish/core/experiment 2020-06-18T03:04:58,575 copying starfish/core/experiment/version.py -> build/lib/starfish/core/experiment 2020-06-18T03:04:58,581 creating build/lib/starfish/core/morphology 2020-06-18T03:04:58,582 copying starfish/core/morphology/__init__.py -> build/lib/starfish/core/morphology 2020-06-18T03:04:58,587 copying starfish/core/morphology/util.py -> build/lib/starfish/core/morphology 2020-06-18T03:04:58,595 creating build/lib/starfish/core/imagestack 2020-06-18T03:04:58,597 copying starfish/core/imagestack/__init__.py -> build/lib/starfish/core/imagestack 2020-06-18T03:04:58,602 copying starfish/core/imagestack/dataorder.py -> build/lib/starfish/core/imagestack 2020-06-18T03:04:58,608 copying starfish/core/imagestack/imagestack.py -> build/lib/starfish/core/imagestack 2020-06-18T03:04:58,617 copying starfish/core/imagestack/physical_coordinates.py -> build/lib/starfish/core/imagestack 2020-06-18T03:04:58,621 copying starfish/core/imagestack/indexing_utils.py -> build/lib/starfish/core/imagestack 2020-06-18T03:04:58,628 creating build/lib/starfish/core/codebook 2020-06-18T03:04:58,630 copying starfish/core/codebook/__init__.py -> build/lib/starfish/core/codebook 2020-06-18T03:04:58,635 copying starfish/core/codebook/_format.py -> build/lib/starfish/core/codebook 2020-06-18T03:04:58,641 copying starfish/core/codebook/codebook.py -> build/lib/starfish/core/codebook 2020-06-18T03:04:58,653 creating build/lib/starfish/core/util 2020-06-18T03:04:58,655 copying starfish/core/util/enum.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,661 copying starfish/core/util/__init__.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,665 copying starfish/core/util/try_import.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,670 copying starfish/core/util/clock.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,673 copying starfish/core/util/logging.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,677 copying starfish/core/util/argparse.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,681 copying starfish/core/util/exec.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,685 copying starfish/core/util/levels.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,691 copying starfish/core/util/config.py -> build/lib/starfish/core/util 2020-06-18T03:04:58,700 creating build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,703 copying starfish/core/spacetx_format/__init__.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,708 copying starfish/core/spacetx_format/util.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,714 copying starfish/core/spacetx_format/test_fov_manifest.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,718 copying starfish/core/spacetx_format/test_fuzz.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,723 copying starfish/core/spacetx_format/test_experiment.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,727 copying starfish/core/spacetx_format/cli.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,733 copying starfish/core/spacetx_format/test_codebook.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,739 copying starfish/core/spacetx_format/test_field_of_view.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,744 copying starfish/core/spacetx_format/validate_sptx.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,751 copying starfish/core/spacetx_format/test_coordinates.py -> build/lib/starfish/core/spacetx_format 2020-06-18T03:04:58,758 creating build/lib/starfish/core/config 2020-06-18T03:04:58,760 copying starfish/core/config/__init__.py -> build/lib/starfish/core/config 2020-06-18T03:04:58,769 creating build/lib/starfish/core/expression_matrix 2020-06-18T03:04:58,771 copying starfish/core/expression_matrix/__init__.py -> build/lib/starfish/core/expression_matrix 2020-06-18T03:04:58,774 copying starfish/core/expression_matrix/expression_matrix.py -> build/lib/starfish/core/expression_matrix 2020-06-18T03:04:58,779 copying starfish/core/expression_matrix/concatenate.py -> build/lib/starfish/core/expression_matrix 2020-06-18T03:04:58,784 creating build/lib/starfish/core/image 2020-06-18T03:04:58,785 copying starfish/core/image/__init__.py -> build/lib/starfish/core/image 2020-06-18T03:04:58,792 creating build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,794 copying starfish/core/intensity_table/__init__.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,799 copying starfish/core/intensity_table/intensity_table.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,806 copying starfish/core/intensity_table/overlap.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,812 copying starfish/core/intensity_table/decoded_intensity_table.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,819 copying starfish/core/intensity_table/concatenate.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,824 copying starfish/core/intensity_table/intensity_table_coordinates.py -> build/lib/starfish/core/intensity_table 2020-06-18T03:04:58,832 creating build/lib/starfish/core/test 2020-06-18T03:04:58,834 copying starfish/core/test/__init__.py -> build/lib/starfish/core/test 2020-06-18T03:04:58,837 copying starfish/core/test/factories.py -> build/lib/starfish/core/test 2020-06-18T03:04:58,843 copying starfish/core/test/test_multiprocessing_workflow.py -> build/lib/starfish/core/test 2020-06-18T03:04:58,848 copying starfish/core/test/test_synthetic_spot_creation.py -> build/lib/starfish/core/test 2020-06-18T03:04:58,852 copying starfish/core/test/test_display.py -> build/lib/starfish/core/test 2020-06-18T03:04:58,859 creating build/lib/starfish/core/types/test 2020-06-18T03:04:58,862 copying starfish/core/types/test/__init__.py -> build/lib/starfish/core/types/test 2020-06-18T03:04:58,867 copying starfish/core/types/test/test_decoded_spots.py -> build/lib/starfish/core/types/test 2020-06-18T03:04:58,874 creating build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,876 copying starfish/core/spots/FindSpots/__init__.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,880 copying starfish/core/spots/FindSpots/blob.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,885 copying starfish/core/spots/FindSpots/_base.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,890 copying starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,896 copying starfish/core/spots/FindSpots/spot_finding_utils.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,903 copying starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2020-06-18T03:04:58,912 creating build/lib/starfish/core/spots/DetectPixels 2020-06-18T03:04:58,915 copying starfish/core/spots/DetectPixels/__init__.py -> build/lib/starfish/core/spots/DetectPixels 2020-06-18T03:04:58,921 copying starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/lib/starfish/core/spots/DetectPixels 2020-06-18T03:04:58,928 copying starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/lib/starfish/core/spots/DetectPixels 2020-06-18T03:04:58,935 copying starfish/core/spots/DetectPixels/_base.py -> build/lib/starfish/core/spots/DetectPixels 2020-06-18T03:04:58,943 creating build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,946 copying starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,951 copying starfish/core/spots/DecodeSpots/__init__.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,956 copying starfish/core/spots/DecodeSpots/util.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,961 copying starfish/core/spots/DecodeSpots/trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,965 copying starfish/core/spots/DecodeSpots/_base.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,969 copying starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,975 copying starfish/core/spots/DecodeSpots/metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2020-06-18T03:04:58,983 creating build/lib/starfish/core/spots/AssignTargets 2020-06-18T03:04:58,985 copying starfish/core/spots/AssignTargets/__init__.py -> build/lib/starfish/core/spots/AssignTargets 2020-06-18T03:04:58,991 copying starfish/core/spots/AssignTargets/_base.py -> build/lib/starfish/core/spots/AssignTargets 2020-06-18T03:04:58,996 copying starfish/core/spots/AssignTargets/label.py -> build/lib/starfish/core/spots/AssignTargets 2020-06-18T03:04:59,001 creating build/lib/starfish/core/spots/FindSpots/test 2020-06-18T03:04:59,003 copying starfish/core/spots/FindSpots/test/__init__.py -> build/lib/starfish/core/spots/FindSpots/test 2020-06-18T03:04:59,007 copying starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/lib/starfish/core/spots/FindSpots/test 2020-06-18T03:04:59,012 copying starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots/test 2020-06-18T03:04:59,018 copying starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/lib/starfish/core/spots/FindSpots/test 2020-06-18T03:04:59,026 creating build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,028 copying starfish/core/spots/DetectPixels/test/__init__.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,033 copying starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,038 copying starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,042 copying starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,046 copying starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/lib/starfish/core/spots/DetectPixels/test 2020-06-18T03:04:59,052 creating build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,054 copying starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,060 copying starfish/core/spots/DecodeSpots/test/__init__.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,064 copying starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,070 copying starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,076 copying starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,080 copying starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,086 copying starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/lib/starfish/core/spots/DecodeSpots/test 2020-06-18T03:04:59,093 creating build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,095 copying starfish/core/experiment/builder/__init__.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,100 copying starfish/core/experiment/builder/inplace.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,106 copying starfish/core/experiment/builder/defaultproviders.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,111 copying starfish/core/experiment/builder/structured_formatter.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,119 copying starfish/core/experiment/builder/builder.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,126 copying starfish/core/experiment/builder/providers.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,132 copying starfish/core/experiment/builder/orderediterator.py -> build/lib/starfish/core/experiment/builder 2020-06-18T03:04:59,139 creating build/lib/starfish/core/experiment/test 2020-06-18T03:04:59,141 copying starfish/core/experiment/test/__init__.py -> build/lib/starfish/core/experiment/test 2020-06-18T03:04:59,145 copying starfish/core/experiment/test/test_experiment.py -> build/lib/starfish/core/experiment/test 2020-06-18T03:04:59,150 copying starfish/core/experiment/test/test_version.py -> build/lib/starfish/core/experiment/test 2020-06-18T03:04:59,155 creating build/lib/starfish/core/experiment/builder/test 2020-06-18T03:04:59,157 copying starfish/core/experiment/builder/test/__init__.py -> build/lib/starfish/core/experiment/builder/test 2020-06-18T03:04:59,163 copying starfish/core/experiment/builder/test/test_orderediterator.py -> build/lib/starfish/core/experiment/builder/test 2020-06-18T03:04:59,168 copying starfish/core/experiment/builder/test/test_small_axis.py -> build/lib/starfish/core/experiment/builder/test 2020-06-18T03:04:59,174 copying starfish/core/experiment/builder/test/test_inplace.py -> build/lib/starfish/core/experiment/builder/test 2020-06-18T03:04:59,183 creating build/lib/starfish/core/experiment/builder/test/factories 2020-06-18T03:04:59,185 copying starfish/core/experiment/builder/test/factories/__init__.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-06-18T03:04:59,191 copying starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-06-18T03:04:59,197 copying starfish/core/experiment/builder/test/factories/all_purpose.py -> build/lib/starfish/core/experiment/builder/test/factories 2020-06-18T03:04:59,204 creating build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,206 copying starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,212 copying starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,216 copying starfish/core/experiment/builder/test/structured_formatter/util.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,222 copying starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,228 copying starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:04:59,235 creating build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,238 copying starfish/core/morphology/Filter/reduce.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,245 copying starfish/core/morphology/Filter/__init__.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,252 copying starfish/core/morphology/Filter/map.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,259 copying starfish/core/morphology/Filter/structural_label.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,264 copying starfish/core/morphology/Filter/areafilter.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,270 copying starfish/core/morphology/Filter/_base.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,275 copying starfish/core/morphology/Filter/min_distance_label.py -> build/lib/starfish/core/morphology/Filter 2020-06-18T03:04:59,281 creating build/lib/starfish/core/morphology/Binarize 2020-06-18T03:04:59,285 copying starfish/core/morphology/Binarize/__init__.py -> build/lib/starfish/core/morphology/Binarize 2020-06-18T03:04:59,292 copying starfish/core/morphology/Binarize/threshold.py -> build/lib/starfish/core/morphology/Binarize 2020-06-18T03:04:59,299 copying starfish/core/morphology/Binarize/_base.py -> build/lib/starfish/core/morphology/Binarize 2020-06-18T03:04:59,306 creating build/lib/starfish/core/morphology/label_image 2020-06-18T03:04:59,309 copying starfish/core/morphology/label_image/__init__.py -> build/lib/starfish/core/morphology/label_image 2020-06-18T03:04:59,314 copying starfish/core/morphology/label_image/label_image.py -> build/lib/starfish/core/morphology/label_image 2020-06-18T03:04:59,321 creating build/lib/starfish/core/morphology/Merge 2020-06-18T03:04:59,323 copying starfish/core/morphology/Merge/__init__.py -> build/lib/starfish/core/morphology/Merge 2020-06-18T03:04:59,329 copying starfish/core/morphology/Merge/_base.py -> build/lib/starfish/core/morphology/Merge 2020-06-18T03:04:59,334 copying starfish/core/morphology/Merge/simple.py -> build/lib/starfish/core/morphology/Merge 2020-06-18T03:04:59,340 creating build/lib/starfish/core/morphology/Segment 2020-06-18T03:04:59,343 copying starfish/core/morphology/Segment/__init__.py -> build/lib/starfish/core/morphology/Segment 2020-06-18T03:04:59,348 copying starfish/core/morphology/Segment/watershed.py -> build/lib/starfish/core/morphology/Segment 2020-06-18T03:04:59,353 copying starfish/core/morphology/Segment/_base.py -> build/lib/starfish/core/morphology/Segment 2020-06-18T03:04:59,359 creating build/lib/starfish/core/morphology/binary_mask 2020-06-18T03:04:59,362 copying starfish/core/morphology/binary_mask/__init__.py -> build/lib/starfish/core/morphology/binary_mask 2020-06-18T03:04:59,369 copying starfish/core/morphology/binary_mask/_io.py -> build/lib/starfish/core/morphology/binary_mask 2020-06-18T03:04:59,377 copying starfish/core/morphology/binary_mask/expand.py -> build/lib/starfish/core/morphology/binary_mask 2020-06-18T03:04:59,384 copying starfish/core/morphology/binary_mask/binary_mask.py -> build/lib/starfish/core/morphology/binary_mask 2020-06-18T03:04:59,393 creating build/lib/starfish/core/morphology/Filter/test 2020-06-18T03:04:59,396 copying starfish/core/morphology/Filter/test/__init__.py -> build/lib/starfish/core/morphology/Filter/test 2020-06-18T03:04:59,401 copying starfish/core/morphology/Filter/test/test_reduce.py -> build/lib/starfish/core/morphology/Filter/test 2020-06-18T03:04:59,406 copying starfish/core/morphology/Filter/test/test_areafilter.py -> build/lib/starfish/core/morphology/Filter/test 2020-06-18T03:04:59,411 copying starfish/core/morphology/Filter/test/test_map.py -> build/lib/starfish/core/morphology/Filter/test 2020-06-18T03:04:59,417 creating build/lib/starfish/core/morphology/Binarize/test 2020-06-18T03:04:59,420 copying starfish/core/morphology/Binarize/test/__init__.py -> build/lib/starfish/core/morphology/Binarize/test 2020-06-18T03:04:59,425 copying starfish/core/morphology/Binarize/test/test_threshold.py -> build/lib/starfish/core/morphology/Binarize/test 2020-06-18T03:04:59,434 creating build/lib/starfish/core/morphology/label_image/test 2020-06-18T03:04:59,437 copying starfish/core/morphology/label_image/test/__init__.py -> build/lib/starfish/core/morphology/label_image/test 2020-06-18T03:04:59,444 copying starfish/core/morphology/label_image/test/test_label_image.py -> build/lib/starfish/core/morphology/label_image/test 2020-06-18T03:04:59,451 creating build/lib/starfish/core/morphology/Merge/test 2020-06-18T03:04:59,454 copying starfish/core/morphology/Merge/test/__init__.py -> build/lib/starfish/core/morphology/Merge/test 2020-06-18T03:04:59,458 copying starfish/core/morphology/Merge/test/test_simple.py -> build/lib/starfish/core/morphology/Merge/test 2020-06-18T03:04:59,465 creating build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,467 copying starfish/core/morphology/binary_mask/test/__init__.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,472 copying starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,478 copying starfish/core/morphology/binary_mask/test/factories.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,484 copying starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,490 copying starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,496 copying starfish/core/morphology/binary_mask/test/test_expand.py -> build/lib/starfish/core/morphology/binary_mask/test 2020-06-18T03:04:59,503 creating build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,507 copying starfish/core/imagestack/test/test_index.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,516 copying starfish/core/imagestack/test/test_labeled_indices.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,524 copying starfish/core/imagestack/test/__init__.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,529 copying starfish/core/imagestack/test/test_metadata.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,534 copying starfish/core/imagestack/test/test_from_numpy_array.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,539 copying starfish/core/imagestack/test/test_apply.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,544 copying starfish/core/imagestack/test/test_export.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,551 copying starfish/core/imagestack/test/test_cropped_load.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,558 copying starfish/core/imagestack/test/test_max_proj.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,565 copying starfish/core/imagestack/test/imagestack_test_utils.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,572 copying starfish/core/imagestack/test/test_slice_ops.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,578 copying starfish/core/imagestack/test/test_coordinates.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,584 copying starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,590 copying starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,597 copying starfish/core/imagestack/test/test_from_tilefetcher.py -> build/lib/starfish/core/imagestack/test 2020-06-18T03:04:59,607 creating build/lib/starfish/core/imagestack/parser 2020-06-18T03:04:59,610 copying starfish/core/imagestack/parser/__init__.py -> build/lib/starfish/core/imagestack/parser 2020-06-18T03:04:59,615 copying starfish/core/imagestack/parser/_key.py -> build/lib/starfish/core/imagestack/parser 2020-06-18T03:04:59,620 copying starfish/core/imagestack/parser/crop.py -> build/lib/starfish/core/imagestack/parser 2020-06-18T03:04:59,627 copying starfish/core/imagestack/parser/_tiledata.py -> build/lib/starfish/core/imagestack/parser 2020-06-18T03:04:59,636 creating build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,640 copying starfish/core/imagestack/test/factories/synthetic_stack.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,647 copying starfish/core/imagestack/test/factories/__init__.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,653 copying starfish/core/imagestack/test/factories/with_coords.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,658 copying starfish/core/imagestack/test/factories/from_codebook.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,663 copying starfish/core/imagestack/test/factories/unique_tiles.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,668 copying starfish/core/imagestack/test/factories/all_purpose.py -> build/lib/starfish/core/imagestack/test/factories 2020-06-18T03:04:59,675 creating build/lib/starfish/core/imagestack/parser/tileset 2020-06-18T03:04:59,678 copying starfish/core/imagestack/parser/tileset/__init__.py -> build/lib/starfish/core/imagestack/parser/tileset 2020-06-18T03:04:59,684 copying starfish/core/imagestack/parser/tileset/_parser.py -> build/lib/starfish/core/imagestack/parser/tileset 2020-06-18T03:04:59,692 creating build/lib/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:04:59,694 copying starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:04:59,698 copying starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:04:59,705 creating build/lib/starfish/core/imagestack/parser/numpy 2020-06-18T03:04:59,706 copying starfish/core/imagestack/parser/numpy/__init__.py -> build/lib/starfish/core/imagestack/parser/numpy 2020-06-18T03:04:59,716 creating build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,718 copying starfish/core/codebook/test/__init__.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,724 copying starfish/core/codebook/test/test_normalize_code_traces.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,731 copying starfish/core/codebook/test/factories.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,736 copying starfish/core/codebook/test/test_to_json.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,740 copying starfish/core/codebook/test/test_metric_decode.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,744 copying starfish/core/codebook/test/test_from_code_array.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,749 copying starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,755 copying starfish/core/codebook/test/test_per_round_max_decode.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,762 copying starfish/core/codebook/test/test_approximate_nearest_code.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,768 copying starfish/core/codebook/test/test_code_length.py -> build/lib/starfish/core/codebook/test 2020-06-18T03:04:59,774 creating build/lib/starfish/core/util/click 2020-06-18T03:04:59,776 copying starfish/core/util/click/__init__.py -> build/lib/starfish/core/util/click 2020-06-18T03:04:59,781 creating build/lib/starfish/core/util/test 2020-06-18T03:04:59,783 copying starfish/core/util/test/__init__.py -> build/lib/starfish/core/util/test 2020-06-18T03:04:59,787 copying starfish/core/util/test/test_levels.py -> build/lib/starfish/core/util/test 2020-06-18T03:04:59,792 copying starfish/core/util/test/test_preserve_float_range.py -> build/lib/starfish/core/util/test 2020-06-18T03:04:59,797 creating build/lib/starfish/core/config/test 2020-06-18T03:04:59,799 copying starfish/core/config/test/__init__.py -> build/lib/starfish/core/config/test 2020-06-18T03:04:59,803 copying starfish/core/config/test/test_config.py -> build/lib/starfish/core/config/test 2020-06-18T03:04:59,809 creating build/lib/starfish/core/expression_matrix/test 2020-06-18T03:04:59,811 copying starfish/core/expression_matrix/test/__init__.py -> build/lib/starfish/core/expression_matrix/test 2020-06-18T03:04:59,816 copying starfish/core/expression_matrix/test/test_concatenate.py -> build/lib/starfish/core/expression_matrix/test 2020-06-18T03:04:59,821 copying starfish/core/expression_matrix/test/test_serialization.py -> build/lib/starfish/core/expression_matrix/test 2020-06-18T03:04:59,832 creating build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,835 copying starfish/core/image/Filter/linear_unmixing.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,840 copying starfish/core/image/Filter/reduce.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,845 copying starfish/core/image/Filter/__init__.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,849 copying starfish/core/image/Filter/laplace.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,854 copying starfish/core/image/Filter/clip.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,860 copying starfish/core/image/Filter/util.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,865 copying starfish/core/image/Filter/map.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,872 copying starfish/core/image/Filter/match_histograms.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,877 copying starfish/core/image/Filter/gaussian_low_pass.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,882 copying starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,886 copying starfish/core/image/Filter/call_bases.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,891 copying starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,897 copying starfish/core/image/Filter/gaussian_high_pass.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,904 copying starfish/core/image/Filter/_base.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,909 copying starfish/core/image/Filter/bandpass.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,916 copying starfish/core/image/Filter/element_wise_mult.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,920 copying starfish/core/image/Filter/mean_high_pass.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,925 copying starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,930 copying starfish/core/image/Filter/clip_percentile_to_zero.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,935 copying starfish/core/image/Filter/clip_value_to_zero.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,940 copying starfish/core/image/Filter/white_tophat.py -> build/lib/starfish/core/image/Filter 2020-06-18T03:04:59,948 creating build/lib/starfish/core/image/_registration 2020-06-18T03:04:59,951 copying starfish/core/image/_registration/__init__.py -> build/lib/starfish/core/image/_registration 2020-06-18T03:04:59,956 copying starfish/core/image/_registration/_format.py -> build/lib/starfish/core/image/_registration 2020-06-18T03:04:59,960 copying starfish/core/image/_registration/transforms_list.py -> build/lib/starfish/core/image/_registration 2020-06-18T03:04:59,966 creating build/lib/starfish/core/image/Segment 2020-06-18T03:04:59,968 copying starfish/core/image/Segment/__init__.py -> build/lib/starfish/core/image/Segment 2020-06-18T03:04:59,972 copying starfish/core/image/Segment/watershed.py -> build/lib/starfish/core/image/Segment 2020-06-18T03:04:59,977 copying starfish/core/image/Segment/_base.py -> build/lib/starfish/core/image/Segment 2020-06-18T03:04:59,986 creating build/lib/starfish/core/image/Filter/test 2020-06-18T03:04:59,988 copying starfish/core/image/Filter/test/test_linear_unmixing.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:04:59,994 copying starfish/core/image/Filter/test/test_call_bases.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:04:59,999 copying starfish/core/image/Filter/test/__init__.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,002 copying starfish/core/image/Filter/test/test_reduce.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,007 copying starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,011 copying starfish/core/image/Filter/test/test_api_contract.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,015 copying starfish/core/image/Filter/test/test_histogram_matching.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,019 copying starfish/core/image/Filter/test/test_white_tophat.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,023 copying starfish/core/image/Filter/test/test_map.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,027 copying starfish/core/image/Filter/test/test_filter.py -> build/lib/starfish/core/image/Filter/test 2020-06-18T03:05:00,032 creating build/lib/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:00,034 copying starfish/core/image/_registration/ApplyTransform/warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:00,038 copying starfish/core/image/_registration/ApplyTransform/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:00,042 copying starfish/core/image/_registration/ApplyTransform/_base.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:00,047 creating build/lib/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:00,049 copying starfish/core/image/_registration/LearnTransform/translation.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:00,054 copying starfish/core/image/_registration/LearnTransform/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:00,057 copying starfish/core/image/_registration/LearnTransform/_base.py -> build/lib/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:00,063 creating build/lib/starfish/core/image/_registration/test 2020-06-18T03:05:00,064 copying starfish/core/image/_registration/test/test_transforms_list.py -> build/lib/starfish/core/image/_registration/test 2020-06-18T03:05:00,069 copying starfish/core/image/_registration/test/__init__.py -> build/lib/starfish/core/image/_registration/test 2020-06-18T03:05:00,073 creating build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:00,075 copying starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:00,079 copying starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:00,084 creating build/lib/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:00,086 copying starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:00,089 copying starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:00,096 creating build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,097 copying starfish/core/intensity_table/test/__init__.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,101 copying starfish/core/intensity_table/test/test_concatenate.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,105 copying starfish/core/intensity_table/test/test_from_imagestack.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,110 copying starfish/core/intensity_table/test/factories.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,114 copying starfish/core/intensity_table/test/test_to_mermaid.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,118 copying starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,123 copying starfish/core/intensity_table/test/test_overlap.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,129 copying starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,136 copying starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,141 copying starfish/core/intensity_table/test/test_from_spot_data.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,145 copying starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,149 copying starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/lib/starfish/core/intensity_table/test 2020-06-18T03:05:00,155 creating build/lib/starfish/test/full_pipelines 2020-06-18T03:05:00,157 copying starfish/test/full_pipelines/__init__.py -> build/lib/starfish/test/full_pipelines 2020-06-18T03:05:00,163 creating build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,166 copying starfish/test/full_pipelines/api/test_merfish.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,174 copying starfish/test/full_pipelines/api/__init__.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,179 copying starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,184 copying starfish/test/full_pipelines/api/test_iss_api.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,189 copying starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,193 copying starfish/test/full_pipelines/api/test_dartfish.py -> build/lib/starfish/test/full_pipelines/api 2020-06-18T03:05:00,200 running egg_info 2020-06-18T03:05:00,217 writing starfish.egg-info/PKG-INFO 2020-06-18T03:05:00,220 writing dependency_links to starfish.egg-info/dependency_links.txt 2020-06-18T03:05:00,224 writing entry points to starfish.egg-info/entry_points.txt 2020-06-18T03:05:00,227 writing requirements to starfish.egg-info/requires.txt 2020-06-18T03:05:00,230 writing top-level names to starfish.egg-info/top_level.txt 2020-06-18T03:05:00,323 reading manifest file 'starfish.egg-info/SOURCES.txt' 2020-06-18T03:05:00,356 reading manifest template 'MANIFEST.in' 2020-06-18T03:05:00,465 writing manifest file 'starfish.egg-info/SOURCES.txt' 2020-06-18T03:05:00,494 copying starfish/REQUIREMENTS-STRICT.txt -> build/lib/starfish 2020-06-18T03:05:00,499 creating build/lib/starfish/spacetx_format 2020-06-18T03:05:00,500 creating build/lib/starfish/spacetx_format/examples 2020-06-18T03:05:00,502 creating build/lib/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,504 copying starfish/spacetx_format/examples/codebook/codebook.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,510 copying starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,515 copying starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/lib/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,519 creating build/lib/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,521 copying starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,528 copying starfish/spacetx_format/examples/experiment/experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,534 copying starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/lib/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,540 creating build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,543 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,549 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,553 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,558 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,563 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,569 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,575 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,582 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,587 copying starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,594 copying starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,599 copying starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,604 copying starfish/spacetx_format/examples/field_of_view/too_large.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,610 creating build/lib/starfish/spacetx_format/examples/fov_manifest 2020-06-18T03:05:00,613 copying starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/lib/starfish/spacetx_format/examples/fov_manifest 2020-06-18T03:05:00,619 creating build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,622 copying starfish/spacetx_format/schema/experiment_4.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,628 copying starfish/spacetx_format/schema/experiment_5.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,633 copying starfish/spacetx_format/schema/extras.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,638 copying starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,642 copying starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,648 copying starfish/spacetx_format/schema/version.json -> build/lib/starfish/spacetx_format/schema 2020-06-18T03:05:00,654 creating build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:00,657 copying starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:00,664 copying starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:00,670 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-06-18T03:05:00,672 copying starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-06-18T03:05:00,677 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:00,679 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:00,684 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:00,690 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:00,697 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-06-18T03:05:00,699 copying starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-06-18T03:05:00,707 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:00,709 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:00,714 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:00,719 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:00,809 UPDATING build/lib/starfish/core/_version.py 2020-06-18T03:05:00,812 set build/lib/starfish/core/_version.py to '0.2.1' 2020-06-18T03:05:00,818 installing to build/bdist.linux-armv7l/wheel 2020-06-18T03:05:00,819 running install 2020-06-18T03:05:00,821 running install_lib 2020-06-18T03:05:00,829 creating build/bdist.linux-armv7l 2020-06-18T03:05:00,829 creating build/bdist.linux-armv7l/wheel 2020-06-18T03:05:00,834 creating build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,836 copying build/lib/starfish/__init__.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,840 copying build/lib/starfish/REQUIREMENTS-STRICT.txt -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,845 copying build/lib/starfish/spots.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,849 copying build/lib/starfish/__main__.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,854 copying build/lib/starfish/data.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,862 creating build/bdist.linux-armv7l/wheel/starfish/experiment 2020-06-18T03:05:00,865 copying build/lib/starfish/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/experiment 2020-06-18T03:05:00,870 copying build/lib/starfish/experiment/builder.py -> build/bdist.linux-armv7l/wheel/starfish/experiment 2020-06-18T03:05:00,874 copying build/lib/starfish/types.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,878 copying build/lib/starfish/image.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,882 copying build/lib/starfish/test.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,885 copying build/lib/starfish/morphology.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:00,891 creating build/bdist.linux-armv7l/wheel/starfish/util 2020-06-18T03:05:00,893 copying build/lib/starfish/util/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/util 2020-06-18T03:05:00,898 copying build/lib/starfish/util/plot.py -> build/bdist.linux-armv7l/wheel/starfish/util 2020-06-18T03:05:00,906 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format 2020-06-18T03:05:00,910 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples 2020-06-18T03:05:00,914 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,917 copying build/lib/starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,921 copying build/lib/starfish/spacetx_format/examples/experiment/experiment.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,925 copying build/lib/starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2020-06-18T03:05:00,930 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2020-06-18T03:05:00,932 copying build/lib/starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2020-06-18T03:05:00,940 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,943 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,949 copying build/lib/starfish/spacetx_format/examples/codebook/codebook.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,954 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2020-06-18T03:05:00,959 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,961 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,965 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,969 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,974 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,981 copying build/lib/starfish/spacetx_format/examples/field_of_view/too_large.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,986 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,991 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:00,997 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:01,002 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:01,008 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:01,013 copying build/lib/starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:01,018 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2020-06-18T03:05:01,025 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,027 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,035 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:01,037 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:01,043 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2020-06-18T03:05:01,049 copying build/lib/starfish/spacetx_format/schema/version.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,054 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,061 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-06-18T03:05:01,065 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:01,068 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:01,074 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:01,080 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2020-06-18T03:05:01,085 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2020-06-18T03:05:01,093 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-06-18T03:05:01,097 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:01,100 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:01,106 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:01,112 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2020-06-18T03:05:01,117 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2020-06-18T03:05:01,123 copying build/lib/starfish/spacetx_format/schema/experiment_4.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,128 copying build/lib/starfish/spacetx_format/schema/experiment_5.0.0.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,134 copying build/lib/starfish/spacetx_format/schema/extras.json -> build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2020-06-18T03:05:01,141 creating build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,145 creating build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,148 copying build/lib/starfish/core/types/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,154 copying build/lib/starfish/core/types/_decoded_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,159 copying build/lib/starfish/core/types/_functionsource.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,165 copying build/lib/starfish/core/types/_constants.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,171 copying build/lib/starfish/core/types/_validated_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,176 copying build/lib/starfish/core/types/_spot_attributes.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,183 creating build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-06-18T03:05:01,185 copying build/lib/starfish/core/types/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-06-18T03:05:01,190 copying build/lib/starfish/core/types/test/test_decoded_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/types/test 2020-06-18T03:05:01,196 copying build/lib/starfish/core/types/_spot_finding_results.py -> build/bdist.linux-armv7l/wheel/starfish/core/types 2020-06-18T03:05:01,204 creating build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-06-18T03:05:01,206 copying build/lib/starfish/core/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-06-18T03:05:01,211 copying build/lib/starfish/core/pipeline/algorithmbase.py -> build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2020-06-18T03:05:01,216 copying build/lib/starfish/core/errors.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,222 copying build/lib/starfish/core/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,228 creating build/bdist.linux-armv7l/wheel/starfish/core/spots 2020-06-18T03:05:01,231 copying build/lib/starfish/core/spots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots 2020-06-18T03:05:01,238 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,241 copying build/lib/starfish/core/spots/FindSpots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,247 copying build/lib/starfish/core/spots/FindSpots/blob.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,254 copying build/lib/starfish/core/spots/FindSpots/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,260 copying build/lib/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,266 copying build/lib/starfish/core/spots/FindSpots/spot_finding_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,271 copying build/lib/starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2020-06-18T03:05:01,278 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-06-18T03:05:01,280 copying build/lib/starfish/core/spots/FindSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-06-18T03:05:01,284 copying build/lib/starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-06-18T03:05:01,289 copying build/lib/starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-06-18T03:05:01,294 copying build/lib/starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2020-06-18T03:05:01,299 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-06-18T03:05:01,303 copying build/lib/starfish/core/spots/DetectPixels/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-06-18T03:05:01,308 copying build/lib/starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-06-18T03:05:01,314 copying build/lib/starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-06-18T03:05:01,319 copying build/lib/starfish/core/spots/DetectPixels/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2020-06-18T03:05:01,326 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,327 copying build/lib/starfish/core/spots/DetectPixels/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,334 copying build/lib/starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,339 copying build/lib/starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,343 copying build/lib/starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,348 copying build/lib/starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2020-06-18T03:05:01,354 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,356 copying build/lib/starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,362 copying build/lib/starfish/core/spots/DecodeSpots/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,366 copying build/lib/starfish/core/spots/DecodeSpots/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,372 copying build/lib/starfish/core/spots/DecodeSpots/trace_builders.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,377 copying build/lib/starfish/core/spots/DecodeSpots/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,382 copying build/lib/starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,387 copying build/lib/starfish/core/spots/DecodeSpots/metric_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2020-06-18T03:05:01,394 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,397 copying build/lib/starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,402 copying build/lib/starfish/core/spots/DecodeSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,406 copying build/lib/starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,411 copying build/lib/starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,416 copying build/lib/starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,422 copying build/lib/starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,428 copying build/lib/starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2020-06-18T03:05:01,436 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-06-18T03:05:01,438 copying build/lib/starfish/core/spots/AssignTargets/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-06-18T03:05:01,443 copying build/lib/starfish/core/spots/AssignTargets/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-06-18T03:05:01,449 copying build/lib/starfish/core/spots/AssignTargets/label.py -> build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2020-06-18T03:05:01,454 copying build/lib/starfish/core/_version.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,460 creating build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-06-18T03:05:01,463 copying build/lib/starfish/core/segmentation_mask/segmentation_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-06-18T03:05:01,468 copying build/lib/starfish/core/segmentation_mask/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2020-06-18T03:05:01,474 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-06-18T03:05:01,476 copying build/lib/starfish/core/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-06-18T03:05:01,481 copying build/lib/starfish/core/experiment/experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-06-18T03:05:01,487 copying build/lib/starfish/core/experiment/version.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment 2020-06-18T03:05:01,493 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,495 copying build/lib/starfish/core/experiment/builder/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,500 copying build/lib/starfish/core/experiment/builder/inplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,505 copying build/lib/starfish/core/experiment/builder/defaultproviders.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,510 copying build/lib/starfish/core/experiment/builder/structured_formatter.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,517 copying build/lib/starfish/core/experiment/builder/builder.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,523 copying build/lib/starfish/core/experiment/builder/providers.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,530 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-06-18T03:05:01,534 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-06-18T03:05:01,536 copying build/lib/starfish/core/experiment/builder/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-06-18T03:05:01,542 copying build/lib/starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-06-18T03:05:01,546 copying build/lib/starfish/core/experiment/builder/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2020-06-18T03:05:01,552 copying build/lib/starfish/core/experiment/builder/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-06-18T03:05:01,557 copying build/lib/starfish/core/experiment/builder/test/test_orderediterator.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-06-18T03:05:01,561 copying build/lib/starfish/core/experiment/builder/test/test_small_axis.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-06-18T03:05:01,566 copying build/lib/starfish/core/experiment/builder/test/test_inplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2020-06-18T03:05:01,574 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,577 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,583 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,587 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,592 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,598 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2020-06-18T03:05:01,604 copying build/lib/starfish/core/experiment/builder/orderediterator.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2020-06-18T03:05:01,610 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-06-18T03:05:01,613 copying build/lib/starfish/core/experiment/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-06-18T03:05:01,617 copying build/lib/starfish/core/experiment/test/test_experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-06-18T03:05:01,623 copying build/lib/starfish/core/experiment/test/test_version.py -> build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2020-06-18T03:05:01,630 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-06-18T03:05:01,632 copying build/lib/starfish/core/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-06-18T03:05:01,636 copying build/lib/starfish/core/morphology/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology 2020-06-18T03:05:01,643 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,645 copying build/lib/starfish/core/morphology/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,650 copying build/lib/starfish/core/morphology/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,655 copying build/lib/starfish/core/morphology/Filter/map.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,660 copying build/lib/starfish/core/morphology/Filter/structural_label.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,665 copying build/lib/starfish/core/morphology/Filter/areafilter.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,670 copying build/lib/starfish/core/morphology/Filter/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,675 copying build/lib/starfish/core/morphology/Filter/min_distance_label.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2020-06-18T03:05:01,681 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-06-18T03:05:01,683 copying build/lib/starfish/core/morphology/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-06-18T03:05:01,688 copying build/lib/starfish/core/morphology/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-06-18T03:05:01,693 copying build/lib/starfish/core/morphology/Filter/test/test_areafilter.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-06-18T03:05:01,698 copying build/lib/starfish/core/morphology/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2020-06-18T03:05:01,704 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-06-18T03:05:01,706 copying build/lib/starfish/core/morphology/Binarize/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-06-18T03:05:01,711 copying build/lib/starfish/core/morphology/Binarize/threshold.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-06-18T03:05:01,716 copying build/lib/starfish/core/morphology/Binarize/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2020-06-18T03:05:01,722 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-06-18T03:05:01,724 copying build/lib/starfish/core/morphology/Binarize/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-06-18T03:05:01,729 copying build/lib/starfish/core/morphology/Binarize/test/test_threshold.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2020-06-18T03:05:01,736 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-06-18T03:05:01,738 copying build/lib/starfish/core/morphology/label_image/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-06-18T03:05:01,744 copying build/lib/starfish/core/morphology/label_image/label_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2020-06-18T03:05:01,751 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-06-18T03:05:01,753 copying build/lib/starfish/core/morphology/label_image/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-06-18T03:05:01,758 copying build/lib/starfish/core/morphology/label_image/test/test_label_image.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2020-06-18T03:05:01,765 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-06-18T03:05:01,767 copying build/lib/starfish/core/morphology/Merge/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-06-18T03:05:01,771 copying build/lib/starfish/core/morphology/Merge/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-06-18T03:05:01,776 copying build/lib/starfish/core/morphology/Merge/simple.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2020-06-18T03:05:01,783 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-06-18T03:05:01,785 copying build/lib/starfish/core/morphology/Merge/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-06-18T03:05:01,790 copying build/lib/starfish/core/morphology/Merge/test/test_simple.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2020-06-18T03:05:01,796 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-06-18T03:05:01,798 copying build/lib/starfish/core/morphology/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-06-18T03:05:01,804 copying build/lib/starfish/core/morphology/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-06-18T03:05:01,809 copying build/lib/starfish/core/morphology/Segment/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2020-06-18T03:05:01,816 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-06-18T03:05:01,818 copying build/lib/starfish/core/morphology/binary_mask/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-06-18T03:05:01,823 copying build/lib/starfish/core/morphology/binary_mask/_io.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-06-18T03:05:01,829 copying build/lib/starfish/core/morphology/binary_mask/expand.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-06-18T03:05:01,833 copying build/lib/starfish/core/morphology/binary_mask/binary_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2020-06-18T03:05:01,843 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,845 copying build/lib/starfish/core/morphology/binary_mask/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,850 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,856 copying build/lib/starfish/core/morphology/binary_mask/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,861 copying build/lib/starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,868 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,874 copying build/lib/starfish/core/morphology/binary_mask/test/test_expand.py -> build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2020-06-18T03:05:01,879 copying build/lib/starfish/core/_display.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,885 copying build/lib/starfish/core/starfish.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:01,892 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,894 copying build/lib/starfish/core/imagestack/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,899 copying build/lib/starfish/core/imagestack/dataorder.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,904 copying build/lib/starfish/core/imagestack/imagestack.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,914 copying build/lib/starfish/core/imagestack/physical_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,918 copying build/lib/starfish/core/imagestack/indexing_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2020-06-18T03:05:01,926 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,927 copying build/lib/starfish/core/imagestack/test/test_index.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,934 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,936 copying build/lib/starfish/core/imagestack/test/factories/synthetic_stack.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,941 copying build/lib/starfish/core/imagestack/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,945 copying build/lib/starfish/core/imagestack/test/factories/with_coords.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,949 copying build/lib/starfish/core/imagestack/test/factories/from_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,953 copying build/lib/starfish/core/imagestack/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,959 copying build/lib/starfish/core/imagestack/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2020-06-18T03:05:01,964 copying build/lib/starfish/core/imagestack/test/test_labeled_indices.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,971 copying build/lib/starfish/core/imagestack/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,975 copying build/lib/starfish/core/imagestack/test/test_metadata.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,981 copying build/lib/starfish/core/imagestack/test/test_from_numpy_array.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,986 copying build/lib/starfish/core/imagestack/test/test_apply.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,992 copying build/lib/starfish/core/imagestack/test/test_export.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:01,997 copying build/lib/starfish/core/imagestack/test/test_cropped_load.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,004 copying build/lib/starfish/core/imagestack/test/test_max_proj.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,009 copying build/lib/starfish/core/imagestack/test/imagestack_test_utils.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,016 copying build/lib/starfish/core/imagestack/test/test_slice_ops.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,022 copying build/lib/starfish/core/imagestack/test/test_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,028 copying build/lib/starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,035 copying build/lib/starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,040 copying build/lib/starfish/core/imagestack/test/test_from_tilefetcher.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2020-06-18T03:05:02,047 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-06-18T03:05:02,050 copying build/lib/starfish/core/imagestack/parser/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-06-18T03:05:02,057 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-06-18T03:05:02,061 copying build/lib/starfish/core/imagestack/parser/tileset/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-06-18T03:05:02,067 copying build/lib/starfish/core/imagestack/parser/tileset/_parser.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2020-06-18T03:05:02,076 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:05:02,079 copying build/lib/starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:05:02,083 copying build/lib/starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2020-06-18T03:05:02,089 copying build/lib/starfish/core/imagestack/parser/_key.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-06-18T03:05:02,094 copying build/lib/starfish/core/imagestack/parser/crop.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-06-18T03:05:02,103 copying build/lib/starfish/core/imagestack/parser/_tiledata.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2020-06-18T03:05:02,111 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2020-06-18T03:05:02,113 copying build/lib/starfish/core/imagestack/parser/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2020-06-18T03:05:02,122 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-06-18T03:05:02,124 copying build/lib/starfish/core/codebook/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-06-18T03:05:02,129 copying build/lib/starfish/core/codebook/_format.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-06-18T03:05:02,134 copying build/lib/starfish/core/codebook/codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook 2020-06-18T03:05:02,143 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,145 copying build/lib/starfish/core/codebook/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,149 copying build/lib/starfish/core/codebook/test/test_normalize_code_traces.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,154 copying build/lib/starfish/core/codebook/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,159 copying build/lib/starfish/core/codebook/test/test_to_json.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,165 copying build/lib/starfish/core/codebook/test/test_metric_decode.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,171 copying build/lib/starfish/core/codebook/test/test_from_code_array.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,177 copying build/lib/starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,181 copying build/lib/starfish/core/codebook/test/test_per_round_max_decode.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,186 copying build/lib/starfish/core/codebook/test/test_approximate_nearest_code.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,190 copying build/lib/starfish/core/codebook/test/test_code_length.py -> build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2020-06-18T03:05:02,196 creating build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,198 copying build/lib/starfish/core/util/enum.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,204 copying build/lib/starfish/core/util/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,209 copying build/lib/starfish/core/util/try_import.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,216 creating build/bdist.linux-armv7l/wheel/starfish/core/util/click 2020-06-18T03:05:02,218 copying build/lib/starfish/core/util/click/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/click 2020-06-18T03:05:02,223 copying build/lib/starfish/core/util/clock.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,227 copying build/lib/starfish/core/util/logging.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,231 copying build/lib/starfish/core/util/argparse.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,235 copying build/lib/starfish/core/util/exec.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,240 copying build/lib/starfish/core/util/levels.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,248 creating build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-06-18T03:05:02,251 copying build/lib/starfish/core/util/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-06-18T03:05:02,256 copying build/lib/starfish/core/util/test/test_levels.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-06-18T03:05:02,261 copying build/lib/starfish/core/util/test/test_preserve_float_range.py -> build/bdist.linux-armv7l/wheel/starfish/core/util/test 2020-06-18T03:05:02,266 copying build/lib/starfish/core/util/config.py -> build/bdist.linux-armv7l/wheel/starfish/core/util 2020-06-18T03:05:02,272 creating build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,274 copying build/lib/starfish/core/spacetx_format/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,278 copying build/lib/starfish/core/spacetx_format/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,285 copying build/lib/starfish/core/spacetx_format/test_fov_manifest.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,291 copying build/lib/starfish/core/spacetx_format/test_fuzz.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,296 copying build/lib/starfish/core/spacetx_format/test_experiment.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,301 copying build/lib/starfish/core/spacetx_format/cli.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,305 copying build/lib/starfish/core/spacetx_format/test_codebook.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,310 copying build/lib/starfish/core/spacetx_format/test_field_of_view.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,314 copying build/lib/starfish/core/spacetx_format/validate_sptx.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,319 copying build/lib/starfish/core/spacetx_format/test_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2020-06-18T03:05:02,325 creating build/bdist.linux-armv7l/wheel/starfish/core/config 2020-06-18T03:05:02,328 copying build/lib/starfish/core/config/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/config 2020-06-18T03:05:02,336 creating build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-06-18T03:05:02,339 copying build/lib/starfish/core/config/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-06-18T03:05:02,343 copying build/lib/starfish/core/config/test/test_config.py -> build/bdist.linux-armv7l/wheel/starfish/core/config/test 2020-06-18T03:05:02,349 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-06-18T03:05:02,351 copying build/lib/starfish/core/expression_matrix/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-06-18T03:05:02,355 copying build/lib/starfish/core/expression_matrix/expression_matrix.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-06-18T03:05:02,359 copying build/lib/starfish/core/expression_matrix/concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2020-06-18T03:05:02,366 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-06-18T03:05:02,369 copying build/lib/starfish/core/expression_matrix/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-06-18T03:05:02,374 copying build/lib/starfish/core/expression_matrix/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-06-18T03:05:02,379 copying build/lib/starfish/core/expression_matrix/test/test_serialization.py -> build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2020-06-18T03:05:02,384 copying build/lib/starfish/core/compat.py -> build/bdist.linux-armv7l/wheel/starfish/core 2020-06-18T03:05:02,391 creating build/bdist.linux-armv7l/wheel/starfish/core/image 2020-06-18T03:05:02,393 copying build/lib/starfish/core/image/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image 2020-06-18T03:05:02,399 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,401 copying build/lib/starfish/core/image/Filter/linear_unmixing.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,408 copying build/lib/starfish/core/image/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,415 copying build/lib/starfish/core/image/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,420 copying build/lib/starfish/core/image/Filter/laplace.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,426 copying build/lib/starfish/core/image/Filter/clip.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,431 copying build/lib/starfish/core/image/Filter/util.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,435 copying build/lib/starfish/core/image/Filter/map.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,440 copying build/lib/starfish/core/image/Filter/match_histograms.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,445 copying build/lib/starfish/core/image/Filter/gaussian_low_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,451 copying build/lib/starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,457 copying build/lib/starfish/core/image/Filter/call_bases.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,464 copying build/lib/starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,469 copying build/lib/starfish/core/image/Filter/gaussian_high_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,474 copying build/lib/starfish/core/image/Filter/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,478 copying build/lib/starfish/core/image/Filter/bandpass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,483 copying build/lib/starfish/core/image/Filter/element_wise_mult.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,488 copying build/lib/starfish/core/image/Filter/mean_high_pass.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,495 copying build/lib/starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,501 copying build/lib/starfish/core/image/Filter/clip_percentile_to_zero.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,507 copying build/lib/starfish/core/image/Filter/clip_value_to_zero.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,511 copying build/lib/starfish/core/image/Filter/white_tophat.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2020-06-18T03:05:02,517 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,519 copying build/lib/starfish/core/image/Filter/test/test_linear_unmixing.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,524 copying build/lib/starfish/core/image/Filter/test/test_call_bases.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,529 copying build/lib/starfish/core/image/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,534 copying build/lib/starfish/core/image/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,540 copying build/lib/starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,546 copying build/lib/starfish/core/image/Filter/test/test_api_contract.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,550 copying build/lib/starfish/core/image/Filter/test/test_histogram_matching.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,554 copying build/lib/starfish/core/image/Filter/test/test_white_tophat.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,559 copying build/lib/starfish/core/image/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,562 copying build/lib/starfish/core/image/Filter/test/test_filter.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2020-06-18T03:05:02,569 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-06-18T03:05:02,571 copying build/lib/starfish/core/image/_registration/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-06-18T03:05:02,578 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:02,580 copying build/lib/starfish/core/image/_registration/ApplyTransform/warp.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:02,586 copying build/lib/starfish/core/image/_registration/ApplyTransform/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:02,592 copying build/lib/starfish/core/image/_registration/ApplyTransform/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2020-06-18T03:05:02,598 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:02,601 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:02,606 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2020-06-18T03:05:02,610 copying build/lib/starfish/core/image/_registration/_format.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-06-18T03:05:02,615 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:02,617 copying build/lib/starfish/core/image/_registration/LearnTransform/translation.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:02,622 copying build/lib/starfish/core/image/_registration/LearnTransform/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:02,626 copying build/lib/starfish/core/image/_registration/LearnTransform/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2020-06-18T03:05:02,632 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:02,635 copying build/lib/starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:02,640 copying build/lib/starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2020-06-18T03:05:02,645 copying build/lib/starfish/core/image/_registration/transforms_list.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2020-06-18T03:05:02,653 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-06-18T03:05:02,656 copying build/lib/starfish/core/image/_registration/test/test_transforms_list.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-06-18T03:05:02,661 copying build/lib/starfish/core/image/_registration/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2020-06-18T03:05:02,668 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-06-18T03:05:02,670 copying build/lib/starfish/core/image/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-06-18T03:05:02,676 copying build/lib/starfish/core/image/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-06-18T03:05:02,683 copying build/lib/starfish/core/image/Segment/_base.py -> build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2020-06-18T03:05:02,690 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,692 copying build/lib/starfish/core/intensity_table/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,697 copying build/lib/starfish/core/intensity_table/intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,704 copying build/lib/starfish/core/intensity_table/overlap.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,710 copying build/lib/starfish/core/intensity_table/decoded_intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,717 copying build/lib/starfish/core/intensity_table/concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,724 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,727 copying build/lib/starfish/core/intensity_table/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,732 copying build/lib/starfish/core/intensity_table/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,738 copying build/lib/starfish/core/intensity_table/test/test_from_imagestack.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,743 copying build/lib/starfish/core/intensity_table/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,749 copying build/lib/starfish/core/intensity_table/test/test_to_mermaid.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,754 copying build/lib/starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,759 copying build/lib/starfish/core/intensity_table/test/test_overlap.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,766 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,773 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,778 copying build/lib/starfish/core/intensity_table/test/test_from_spot_data.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,783 copying build/lib/starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,789 copying build/lib/starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2020-06-18T03:05:02,795 copying build/lib/starfish/core/intensity_table/intensity_table_coordinates.py -> build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2020-06-18T03:05:02,802 creating build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,804 copying build/lib/starfish/core/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,809 copying build/lib/starfish/core/test/factories.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,817 copying build/lib/starfish/core/test/test_multiprocessing_workflow.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,824 copying build/lib/starfish/core/test/test_synthetic_spot_creation.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,829 copying build/lib/starfish/core/test/test_display.py -> build/bdist.linux-armv7l/wheel/starfish/core/test 2020-06-18T03:05:02,836 creating build/bdist.linux-armv7l/wheel/starfish/test 2020-06-18T03:05:02,839 copying build/lib/starfish/test/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test 2020-06-18T03:05:02,846 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2020-06-18T03:05:02,848 copying build/lib/starfish/test/full_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2020-06-18T03:05:02,855 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,857 copying build/lib/starfish/test/full_pipelines/api/test_merfish.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,865 copying build/lib/starfish/test/full_pipelines/api/__init__.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,869 copying build/lib/starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,875 copying build/lib/starfish/test/full_pipelines/api/test_iss_api.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,881 copying build/lib/starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,886 copying build/lib/starfish/test/full_pipelines/api/test_dartfish.py -> build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2020-06-18T03:05:02,893 copying build/lib/starfish/config.py -> build/bdist.linux-armv7l/wheel/starfish 2020-06-18T03:05:02,898 running install_egg_info 2020-06-18T03:05:02,919 Copying starfish.egg-info to build/bdist.linux-armv7l/wheel/starfish-0.2.1-py3.7.egg-info 2020-06-18T03:05:02,952 running install_scripts 2020-06-18T03:05:03,157 creating build/bdist.linux-armv7l/wheel/starfish-0.2.1.dist-info/WHEEL 2020-06-18T03:05:03,162 creating '/tmp/pip-wheel-6x84ueoe/starfish-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-06-18T03:05:03,168 adding 'starfish/REQUIREMENTS-STRICT.txt' 2020-06-18T03:05:03,170 adding 'starfish/__init__.py' 2020-06-18T03:05:03,172 adding 'starfish/__main__.py' 2020-06-18T03:05:03,175 adding 'starfish/config.py' 2020-06-18T03:05:03,178 adding 'starfish/data.py' 2020-06-18T03:05:03,180 adding 'starfish/image.py' 2020-06-18T03:05:03,182 adding 'starfish/morphology.py' 2020-06-18T03:05:03,184 adding 'starfish/spots.py' 2020-06-18T03:05:03,186 adding 'starfish/test.py' 2020-06-18T03:05:03,189 adding 'starfish/types.py' 2020-06-18T03:05:03,193 adding 'starfish/core/__init__.py' 2020-06-18T03:05:03,196 adding 'starfish/core/_display.py' 2020-06-18T03:05:03,199 adding 'starfish/core/_version.py' 2020-06-18T03:05:03,203 adding 'starfish/core/compat.py' 2020-06-18T03:05:03,206 adding 'starfish/core/errors.py' 2020-06-18T03:05:03,208 adding 'starfish/core/starfish.py' 2020-06-18T03:05:03,212 adding 'starfish/core/codebook/__init__.py' 2020-06-18T03:05:03,214 adding 'starfish/core/codebook/_format.py' 2020-06-18T03:05:03,221 adding 'starfish/core/codebook/codebook.py' 2020-06-18T03:05:03,225 adding 'starfish/core/codebook/test/__init__.py' 2020-06-18T03:05:03,228 adding 'starfish/core/codebook/test/factories.py' 2020-06-18T03:05:03,230 adding 'starfish/core/codebook/test/test_approximate_nearest_code.py' 2020-06-18T03:05:03,232 adding 'starfish/core/codebook/test/test_code_length.py' 2020-06-18T03:05:03,235 adding 'starfish/core/codebook/test/test_from_code_array.py' 2020-06-18T03:05:03,238 adding 'starfish/core/codebook/test/test_metric_decode.py' 2020-06-18T03:05:03,241 adding 'starfish/core/codebook/test/test_normalize_code_traces.py' 2020-06-18T03:05:03,244 adding 'starfish/core/codebook/test/test_per_round_max_decode.py' 2020-06-18T03:05:03,247 adding 'starfish/core/codebook/test/test_synthetic_one_hot_codebook.py' 2020-06-18T03:05:03,249 adding 'starfish/core/codebook/test/test_to_json.py' 2020-06-18T03:05:03,253 adding 'starfish/core/config/__init__.py' 2020-06-18T03:05:03,257 adding 'starfish/core/config/test/__init__.py' 2020-06-18T03:05:03,260 adding 'starfish/core/config/test/test_config.py' 2020-06-18T03:05:03,264 adding 'starfish/core/experiment/__init__.py' 2020-06-18T03:05:03,268 adding 'starfish/core/experiment/experiment.py' 2020-06-18T03:05:03,271 adding 'starfish/core/experiment/version.py' 2020-06-18T03:05:03,274 adding 'starfish/core/experiment/builder/__init__.py' 2020-06-18T03:05:03,278 adding 'starfish/core/experiment/builder/builder.py' 2020-06-18T03:05:03,281 adding 'starfish/core/experiment/builder/defaultproviders.py' 2020-06-18T03:05:03,284 adding 'starfish/core/experiment/builder/inplace.py' 2020-06-18T03:05:03,286 adding 'starfish/core/experiment/builder/orderediterator.py' 2020-06-18T03:05:03,289 adding 'starfish/core/experiment/builder/providers.py' 2020-06-18T03:05:03,292 adding 'starfish/core/experiment/builder/structured_formatter.py' 2020-06-18T03:05:03,296 adding 'starfish/core/experiment/builder/test/__init__.py' 2020-06-18T03:05:03,299 adding 'starfish/core/experiment/builder/test/test_inplace.py' 2020-06-18T03:05:03,301 adding 'starfish/core/experiment/builder/test/test_orderediterator.py' 2020-06-18T03:05:03,304 adding 'starfish/core/experiment/builder/test/test_small_axis.py' 2020-06-18T03:05:03,308 adding 'starfish/core/experiment/builder/test/factories/__init__.py' 2020-06-18T03:05:03,310 adding 'starfish/core/experiment/builder/test/factories/all_purpose.py' 2020-06-18T03:05:03,313 adding 'starfish/core/experiment/builder/test/factories/unique_tiles.py' 2020-06-18T03:05:03,317 adding 'starfish/core/experiment/builder/test/structured_formatter/__init__.py' 2020-06-18T03:05:03,320 adding 'starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py' 2020-06-18T03:05:03,323 adding 'starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py' 2020-06-18T03:05:03,326 adding 'starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py' 2020-06-18T03:05:03,329 adding 'starfish/core/experiment/builder/test/structured_formatter/util.py' 2020-06-18T03:05:03,332 adding 'starfish/core/experiment/test/__init__.py' 2020-06-18T03:05:03,335 adding 'starfish/core/experiment/test/test_experiment.py' 2020-06-18T03:05:03,337 adding 'starfish/core/experiment/test/test_version.py' 2020-06-18T03:05:03,340 adding 'starfish/core/expression_matrix/__init__.py' 2020-06-18T03:05:03,343 adding 'starfish/core/expression_matrix/concatenate.py' 2020-06-18T03:05:03,346 adding 'starfish/core/expression_matrix/expression_matrix.py' 2020-06-18T03:05:03,349 adding 'starfish/core/expression_matrix/test/__init__.py' 2020-06-18T03:05:03,351 adding 'starfish/core/expression_matrix/test/test_concatenate.py' 2020-06-18T03:05:03,354 adding 'starfish/core/expression_matrix/test/test_serialization.py' 2020-06-18T03:05:03,357 adding 'starfish/core/image/__init__.py' 2020-06-18T03:05:03,362 adding 'starfish/core/image/Filter/__init__.py' 2020-06-18T03:05:03,364 adding 'starfish/core/image/Filter/_base.py' 2020-06-18T03:05:03,367 adding 'starfish/core/image/Filter/bandpass.py' 2020-06-18T03:05:03,370 adding 'starfish/core/image/Filter/call_bases.py' 2020-06-18T03:05:03,373 adding 'starfish/core/image/Filter/clip.py' 2020-06-18T03:05:03,376 adding 'starfish/core/image/Filter/clip_percentile_to_zero.py' 2020-06-18T03:05:03,379 adding 'starfish/core/image/Filter/clip_value_to_zero.py' 2020-06-18T03:05:03,382 adding 'starfish/core/image/Filter/element_wise_mult.py' 2020-06-18T03:05:03,385 adding 'starfish/core/image/Filter/gaussian_high_pass.py' 2020-06-18T03:05:03,388 adding 'starfish/core/image/Filter/gaussian_low_pass.py' 2020-06-18T03:05:03,391 adding 'starfish/core/image/Filter/ilastik_pre_trained_probability.py' 2020-06-18T03:05:03,394 adding 'starfish/core/image/Filter/laplace.py' 2020-06-18T03:05:03,397 adding 'starfish/core/image/Filter/linear_unmixing.py' 2020-06-18T03:05:03,400 adding 'starfish/core/image/Filter/map.py' 2020-06-18T03:05:03,403 adding 'starfish/core/image/Filter/match_histograms.py' 2020-06-18T03:05:03,406 adding 'starfish/core/image/Filter/mean_high_pass.py' 2020-06-18T03:05:03,409 adding 'starfish/core/image/Filter/reduce.py' 2020-06-18T03:05:03,412 adding 'starfish/core/image/Filter/richardson_lucy_deconvolution.py' 2020-06-18T03:05:03,415 adding 'starfish/core/image/Filter/util.py' 2020-06-18T03:05:03,418 adding 'starfish/core/image/Filter/white_tophat.py' 2020-06-18T03:05:03,421 adding 'starfish/core/image/Filter/zero_by_channel_magnitude.py' 2020-06-18T03:05:03,425 adding 'starfish/core/image/Filter/test/__init__.py' 2020-06-18T03:05:03,427 adding 'starfish/core/image/Filter/test/test_api_contract.py' 2020-06-18T03:05:03,430 adding 'starfish/core/image/Filter/test/test_call_bases.py' 2020-06-18T03:05:03,433 adding 'starfish/core/image/Filter/test/test_filter.py' 2020-06-18T03:05:03,435 adding 'starfish/core/image/Filter/test/test_histogram_matching.py' 2020-06-18T03:05:03,438 adding 'starfish/core/image/Filter/test/test_linear_unmixing.py' 2020-06-18T03:05:03,440 adding 'starfish/core/image/Filter/test/test_map.py' 2020-06-18T03:05:03,443 adding 'starfish/core/image/Filter/test/test_reduce.py' 2020-06-18T03:05:03,446 adding 'starfish/core/image/Filter/test/test_white_tophat.py' 2020-06-18T03:05:03,448 adding 'starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py' 2020-06-18T03:05:03,452 adding 'starfish/core/image/Segment/__init__.py' 2020-06-18T03:05:03,454 adding 'starfish/core/image/Segment/_base.py' 2020-06-18T03:05:03,458 adding 'starfish/core/image/Segment/watershed.py' 2020-06-18T03:05:03,462 adding 'starfish/core/image/_registration/__init__.py' 2020-06-18T03:05:03,464 adding 'starfish/core/image/_registration/_format.py' 2020-06-18T03:05:03,467 adding 'starfish/core/image/_registration/transforms_list.py' 2020-06-18T03:05:03,471 adding 'starfish/core/image/_registration/ApplyTransform/__init__.py' 2020-06-18T03:05:03,473 adding 'starfish/core/image/_registration/ApplyTransform/_base.py' 2020-06-18T03:05:03,476 adding 'starfish/core/image/_registration/ApplyTransform/warp.py' 2020-06-18T03:05:03,479 adding 'starfish/core/image/_registration/ApplyTransform/test/__init__.py' 2020-06-18T03:05:03,482 adding 'starfish/core/image/_registration/ApplyTransform/test/test_warp.py' 2020-06-18T03:05:03,486 adding 'starfish/core/image/_registration/LearnTransform/__init__.py' 2020-06-18T03:05:03,488 adding 'starfish/core/image/_registration/LearnTransform/_base.py' 2020-06-18T03:05:03,491 adding 'starfish/core/image/_registration/LearnTransform/translation.py' 2020-06-18T03:05:03,494 adding 'starfish/core/image/_registration/LearnTransform/test/__init__.py' 2020-06-18T03:05:03,498 adding 'starfish/core/image/_registration/LearnTransform/test/test_translation.py' 2020-06-18T03:05:03,503 adding 'starfish/core/image/_registration/test/__init__.py' 2020-06-18T03:05:03,507 adding 'starfish/core/image/_registration/test/test_transforms_list.py' 2020-06-18T03:05:03,512 adding 'starfish/core/imagestack/__init__.py' 2020-06-18T03:05:03,515 adding 'starfish/core/imagestack/dataorder.py' 2020-06-18T03:05:03,526 adding 'starfish/core/imagestack/imagestack.py' 2020-06-18T03:05:03,530 adding 'starfish/core/imagestack/indexing_utils.py' 2020-06-18T03:05:03,532 adding 'starfish/core/imagestack/physical_coordinates.py' 2020-06-18T03:05:03,536 adding 'starfish/core/imagestack/parser/__init__.py' 2020-06-18T03:05:03,538 adding 'starfish/core/imagestack/parser/_key.py' 2020-06-18T03:05:03,541 adding 'starfish/core/imagestack/parser/_tiledata.py' 2020-06-18T03:05:03,545 adding 'starfish/core/imagestack/parser/crop.py' 2020-06-18T03:05:03,549 adding 'starfish/core/imagestack/parser/numpy/__init__.py' 2020-06-18T03:05:03,553 adding 'starfish/core/imagestack/parser/tilefetcher/__init__.py' 2020-06-18T03:05:03,556 adding 'starfish/core/imagestack/parser/tilefetcher/_parser.py' 2020-06-18T03:05:03,559 adding 'starfish/core/imagestack/parser/tileset/__init__.py' 2020-06-18T03:05:03,562 adding 'starfish/core/imagestack/parser/tileset/_parser.py' 2020-06-18T03:05:03,566 adding 'starfish/core/imagestack/test/__init__.py' 2020-06-18T03:05:03,569 adding 'starfish/core/imagestack/test/imagestack_test_utils.py' 2020-06-18T03:05:03,572 adding 'starfish/core/imagestack/test/test_apply.py' 2020-06-18T03:05:03,575 adding 'starfish/core/imagestack/test/test_coordinates.py' 2020-06-18T03:05:03,578 adding 'starfish/core/imagestack/test/test_cropped_load.py' 2020-06-18T03:05:03,581 adding 'starfish/core/imagestack/test/test_export.py' 2020-06-18T03:05:03,583 adding 'starfish/core/imagestack/test/test_from_numpy_array.py' 2020-06-18T03:05:03,586 adding 'starfish/core/imagestack/test/test_from_tilefetcher.py' 2020-06-18T03:05:03,589 adding 'starfish/core/imagestack/test/test_index.py' 2020-06-18T03:05:03,592 adding 'starfish/core/imagestack/test/test_labeled_indices.py' 2020-06-18T03:05:03,595 adding 'starfish/core/imagestack/test/test_max_proj.py' 2020-06-18T03:05:03,598 adding 'starfish/core/imagestack/test/test_metadata.py' 2020-06-18T03:05:03,600 adding 'starfish/core/imagestack/test/test_physical_coordinate_calculator.py' 2020-06-18T03:05:03,603 adding 'starfish/core/imagestack/test/test_slice_ops.py' 2020-06-18T03:05:03,606 adding 'starfish/core/imagestack/test/test_slicedimage_dtype.py' 2020-06-18T03:05:03,610 adding 'starfish/core/imagestack/test/factories/__init__.py' 2020-06-18T03:05:03,612 adding 'starfish/core/imagestack/test/factories/all_purpose.py' 2020-06-18T03:05:03,615 adding 'starfish/core/imagestack/test/factories/from_codebook.py' 2020-06-18T03:05:03,618 adding 'starfish/core/imagestack/test/factories/synthetic_stack.py' 2020-06-18T03:05:03,620 adding 'starfish/core/imagestack/test/factories/unique_tiles.py' 2020-06-18T03:05:03,623 adding 'starfish/core/imagestack/test/factories/with_coords.py' 2020-06-18T03:05:03,626 adding 'starfish/core/intensity_table/__init__.py' 2020-06-18T03:05:03,629 adding 'starfish/core/intensity_table/concatenate.py' 2020-06-18T03:05:03,632 adding 'starfish/core/intensity_table/decoded_intensity_table.py' 2020-06-18T03:05:03,637 adding 'starfish/core/intensity_table/intensity_table.py' 2020-06-18T03:05:03,640 adding 'starfish/core/intensity_table/intensity_table_coordinates.py' 2020-06-18T03:05:03,642 adding 'starfish/core/intensity_table/overlap.py' 2020-06-18T03:05:03,646 adding 'starfish/core/intensity_table/test/__init__.py' 2020-06-18T03:05:03,649 adding 'starfish/core/intensity_table/test/factories.py' 2020-06-18T03:05:03,652 adding 'starfish/core/intensity_table/test/test_concatenate.py' 2020-06-18T03:05:03,655 adding 'starfish/core/intensity_table/test/test_empty_intensity_table.py' 2020-06-18T03:05:03,657 adding 'starfish/core/intensity_table/test/test_from_imagestack.py' 2020-06-18T03:05:03,660 adding 'starfish/core/intensity_table/test/test_from_spot_data.py' 2020-06-18T03:05:03,663 adding 'starfish/core/intensity_table/test/test_intensity_table_coords.py' 2020-06-18T03:05:03,665 adding 'starfish/core/intensity_table/test/test_intensity_table_serialization.py' 2020-06-18T03:05:03,668 adding 'starfish/core/intensity_table/test/test_overlap.py' 2020-06-18T03:05:03,671 adding 'starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py' 2020-06-18T03:05:03,673 adding 'starfish/core/intensity_table/test/test_synthetic_intensities.py' 2020-06-18T03:05:03,676 adding 'starfish/core/intensity_table/test/test_to_mermaid.py' 2020-06-18T03:05:03,680 adding 'starfish/core/morphology/__init__.py' 2020-06-18T03:05:03,682 adding 'starfish/core/morphology/util.py' 2020-06-18T03:05:03,686 adding 'starfish/core/morphology/Binarize/__init__.py' 2020-06-18T03:05:03,688 adding 'starfish/core/morphology/Binarize/_base.py' 2020-06-18T03:05:03,691 adding 'starfish/core/morphology/Binarize/threshold.py' 2020-06-18T03:05:03,695 adding 'starfish/core/morphology/Binarize/test/__init__.py' 2020-06-18T03:05:03,697 adding 'starfish/core/morphology/Binarize/test/test_threshold.py' 2020-06-18T03:05:03,701 adding 'starfish/core/morphology/Filter/__init__.py' 2020-06-18T03:05:03,703 adding 'starfish/core/morphology/Filter/_base.py' 2020-06-18T03:05:03,706 adding 'starfish/core/morphology/Filter/areafilter.py' 2020-06-18T03:05:03,709 adding 'starfish/core/morphology/Filter/map.py' 2020-06-18T03:05:03,712 adding 'starfish/core/morphology/Filter/min_distance_label.py' 2020-06-18T03:05:03,715 adding 'starfish/core/morphology/Filter/reduce.py' 2020-06-18T03:05:03,717 adding 'starfish/core/morphology/Filter/structural_label.py' 2020-06-18T03:05:03,721 adding 'starfish/core/morphology/Filter/test/__init__.py' 2020-06-18T03:05:03,723 adding 'starfish/core/morphology/Filter/test/test_areafilter.py' 2020-06-18T03:05:03,726 adding 'starfish/core/morphology/Filter/test/test_map.py' 2020-06-18T03:05:03,729 adding 'starfish/core/morphology/Filter/test/test_reduce.py' 2020-06-18T03:05:03,732 adding 'starfish/core/morphology/Merge/__init__.py' 2020-06-18T03:05:03,735 adding 'starfish/core/morphology/Merge/_base.py' 2020-06-18T03:05:03,737 adding 'starfish/core/morphology/Merge/simple.py' 2020-06-18T03:05:03,741 adding 'starfish/core/morphology/Merge/test/__init__.py' 2020-06-18T03:05:03,744 adding 'starfish/core/morphology/Merge/test/test_simple.py' 2020-06-18T03:05:03,748 adding 'starfish/core/morphology/Segment/__init__.py' 2020-06-18T03:05:03,750 adding 'starfish/core/morphology/Segment/_base.py' 2020-06-18T03:05:03,753 adding 'starfish/core/morphology/Segment/watershed.py' 2020-06-18T03:05:03,757 adding 'starfish/core/morphology/binary_mask/__init__.py' 2020-06-18T03:05:03,760 adding 'starfish/core/morphology/binary_mask/_io.py' 2020-06-18T03:05:03,766 adding 'starfish/core/morphology/binary_mask/binary_mask.py' 2020-06-18T03:05:03,769 adding 'starfish/core/morphology/binary_mask/expand.py' 2020-06-18T03:05:03,773 adding 'starfish/core/morphology/binary_mask/test/__init__.py' 2020-06-18T03:05:03,776 adding 'starfish/core/morphology/binary_mask/test/factories.py' 2020-06-18T03:05:03,779 adding 'starfish/core/morphology/binary_mask/test/test_binary_mask.py' 2020-06-18T03:05:03,781 adding 'starfish/core/morphology/binary_mask/test/test_expand.py' 2020-06-18T03:05:03,784 adding 'starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py' 2020-06-18T03:05:03,787 adding 'starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py' 2020-06-18T03:05:03,791 adding 'starfish/core/morphology/label_image/__init__.py' 2020-06-18T03:05:03,794 adding 'starfish/core/morphology/label_image/label_image.py' 2020-06-18T03:05:03,798 adding 'starfish/core/morphology/label_image/test/__init__.py' 2020-06-18T03:05:03,801 adding 'starfish/core/morphology/label_image/test/test_label_image.py' 2020-06-18T03:05:03,804 adding 'starfish/core/pipeline/__init__.py' 2020-06-18T03:05:03,807 adding 'starfish/core/pipeline/algorithmbase.py' 2020-06-18T03:05:03,810 adding 'starfish/core/segmentation_mask/__init__.py' 2020-06-18T03:05:03,813 adding 'starfish/core/segmentation_mask/segmentation_mask.py' 2020-06-18T03:05:03,817 adding 'starfish/core/spacetx_format/__init__.py' 2020-06-18T03:05:03,819 adding 'starfish/core/spacetx_format/cli.py' 2020-06-18T03:05:03,822 adding 'starfish/core/spacetx_format/test_codebook.py' 2020-06-18T03:05:03,824 adding 'starfish/core/spacetx_format/test_coordinates.py' 2020-06-18T03:05:03,827 adding 'starfish/core/spacetx_format/test_experiment.py' 2020-06-18T03:05:03,829 adding 'starfish/core/spacetx_format/test_field_of_view.py' 2020-06-18T03:05:03,832 adding 'starfish/core/spacetx_format/test_fov_manifest.py' 2020-06-18T03:05:03,835 adding 'starfish/core/spacetx_format/test_fuzz.py' 2020-06-18T03:05:03,839 adding 'starfish/core/spacetx_format/util.py' 2020-06-18T03:05:03,842 adding 'starfish/core/spacetx_format/validate_sptx.py' 2020-06-18T03:05:03,846 adding 'starfish/core/spots/__init__.py' 2020-06-18T03:05:03,849 adding 'starfish/core/spots/AssignTargets/__init__.py' 2020-06-18T03:05:03,852 adding 'starfish/core/spots/AssignTargets/_base.py' 2020-06-18T03:05:03,854 adding 'starfish/core/spots/AssignTargets/label.py' 2020-06-18T03:05:03,858 adding 'starfish/core/spots/DecodeSpots/__init__.py' 2020-06-18T03:05:03,861 adding 'starfish/core/spots/DecodeSpots/_base.py' 2020-06-18T03:05:03,864 adding 'starfish/core/spots/DecodeSpots/metric_decoder.py' 2020-06-18T03:05:03,866 adding 'starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py' 2020-06-18T03:05:03,869 adding 'starfish/core/spots/DecodeSpots/simple_lookup_decoder.py' 2020-06-18T03:05:03,872 adding 'starfish/core/spots/DecodeSpots/trace_builders.py' 2020-06-18T03:05:03,875 adding 'starfish/core/spots/DecodeSpots/util.py' 2020-06-18T03:05:03,879 adding 'starfish/core/spots/DecodeSpots/test/__init__.py' 2020-06-18T03:05:03,882 adding 'starfish/core/spots/DecodeSpots/test/test_composite_codebook.py' 2020-06-18T03:05:03,885 adding 'starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py' 2020-06-18T03:05:03,887 adding 'starfish/core/spots/DecodeSpots/test/test_metric_decoder.py' 2020-06-18T03:05:03,890 adding 'starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py' 2020-06-18T03:05:03,893 adding 'starfish/core/spots/DecodeSpots/test/test_spot_finders.py' 2020-06-18T03:05:03,896 adding 'starfish/core/spots/DecodeSpots/test/test_trace_builders.py' 2020-06-18T03:05:03,900 adding 'starfish/core/spots/DetectPixels/__init__.py' 2020-06-18T03:05:03,902 adding 'starfish/core/spots/DetectPixels/_base.py' 2020-06-18T03:05:03,907 adding 'starfish/core/spots/DetectPixels/combine_adjacent_features.py' 2020-06-18T03:05:03,910 adding 'starfish/core/spots/DetectPixels/pixel_spot_decoder.py' 2020-06-18T03:05:03,914 adding 'starfish/core/spots/DetectPixels/test/__init__.py' 2020-06-18T03:05:03,916 adding 'starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py' 2020-06-18T03:05:03,919 adding 'starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py' 2020-06-18T03:05:03,922 adding 'starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py' 2020-06-18T03:05:03,924 adding 'starfish/core/spots/DetectPixels/test/test_targets_map.py' 2020-06-18T03:05:03,928 adding 'starfish/core/spots/FindSpots/__init__.py' 2020-06-18T03:05:03,931 adding 'starfish/core/spots/FindSpots/_base.py' 2020-06-18T03:05:03,935 adding 'starfish/core/spots/FindSpots/blob.py' 2020-06-18T03:05:03,939 adding 'starfish/core/spots/FindSpots/local_max_peak_finder.py' 2020-06-18T03:05:03,942 adding 'starfish/core/spots/FindSpots/spot_finding_utils.py' 2020-06-18T03:05:03,946 adding 'starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py' 2020-06-18T03:05:03,950 adding 'starfish/core/spots/FindSpots/test/__init__.py' 2020-06-18T03:05:03,952 adding 'starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py' 2020-06-18T03:05:03,955 adding 'starfish/core/spots/FindSpots/test/test_spot_detection.py' 2020-06-18T03:05:03,958 adding 'starfish/core/spots/FindSpots/test/test_synthetic_data.py' 2020-06-18T03:05:03,962 adding 'starfish/core/test/__init__.py' 2020-06-18T03:05:03,966 adding 'starfish/core/test/factories.py' 2020-06-18T03:05:03,969 adding 'starfish/core/test/test_display.py' 2020-06-18T03:05:03,972 adding 'starfish/core/test/test_multiprocessing_workflow.py' 2020-06-18T03:05:03,974 adding 'starfish/core/test/test_synthetic_spot_creation.py' 2020-06-18T03:05:03,978 adding 'starfish/core/types/__init__.py' 2020-06-18T03:05:03,981 adding 'starfish/core/types/_constants.py' 2020-06-18T03:05:03,984 adding 'starfish/core/types/_decoded_spots.py' 2020-06-18T03:05:03,986 adding 'starfish/core/types/_functionsource.py' 2020-06-18T03:05:03,989 adding 'starfish/core/types/_spot_attributes.py' 2020-06-18T03:05:03,992 adding 'starfish/core/types/_spot_finding_results.py' 2020-06-18T03:05:03,995 adding 'starfish/core/types/_validated_table.py' 2020-06-18T03:05:03,998 adding 'starfish/core/types/test/__init__.py' 2020-06-18T03:05:04,001 adding 'starfish/core/types/test/test_decoded_spots.py' 2020-06-18T03:05:04,005 adding 'starfish/core/util/__init__.py' 2020-06-18T03:05:04,007 adding 'starfish/core/util/argparse.py' 2020-06-18T03:05:04,009 adding 'starfish/core/util/clock.py' 2020-06-18T03:05:04,012 adding 'starfish/core/util/config.py' 2020-06-18T03:05:04,014 adding 'starfish/core/util/enum.py' 2020-06-18T03:05:04,017 adding 'starfish/core/util/exec.py' 2020-06-18T03:05:04,020 adding 'starfish/core/util/levels.py' 2020-06-18T03:05:04,023 adding 'starfish/core/util/logging.py' 2020-06-18T03:05:04,025 adding 'starfish/core/util/try_import.py' 2020-06-18T03:05:04,029 adding 'starfish/core/util/click/__init__.py' 2020-06-18T03:05:04,033 adding 'starfish/core/util/test/__init__.py' 2020-06-18T03:05:04,036 adding 'starfish/core/util/test/test_levels.py' 2020-06-18T03:05:04,039 adding 'starfish/core/util/test/test_preserve_float_range.py' 2020-06-18T03:05:04,042 adding 'starfish/experiment/__init__.py' 2020-06-18T03:05:04,044 adding 'starfish/experiment/builder.py' 2020-06-18T03:05:04,050 adding 'starfish/spacetx_format/examples/codebook/codebook.json' 2020-06-18T03:05:04,052 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal.json' 2020-06-18T03:05:04,055 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json' 2020-06-18T03:05:04,058 adding 'starfish/spacetx_format/examples/experiment/dartfish_experiment.json' 2020-06-18T03:05:04,061 adding 'starfish/spacetx_format/examples/experiment/experiment.json' 2020-06-18T03:05:04,063 adding 'starfish/spacetx_format/examples/experiment/no_fov_manifest.json' 2020-06-18T03:05:04,067 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json' 2020-06-18T03:05:04,069 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json' 2020-06-18T03:05:04,072 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json' 2020-06-18T03:05:04,074 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json' 2020-06-18T03:05:04,076 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json' 2020-06-18T03:05:04,079 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json' 2020-06-18T03:05:04,081 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json' 2020-06-18T03:05:04,083 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json' 2020-06-18T03:05:04,086 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json' 2020-06-18T03:05:04,089 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json' 2020-06-18T03:05:04,092 adding 'starfish/spacetx_format/examples/field_of_view/field_of_view.json' 2020-06-18T03:05:04,094 adding 'starfish/spacetx_format/examples/field_of_view/too_large.json' 2020-06-18T03:05:04,098 adding 'starfish/spacetx_format/examples/fov_manifest/fov_manifest.json' 2020-06-18T03:05:04,102 adding 'starfish/spacetx_format/schema/experiment_4.0.0.json' 2020-06-18T03:05:04,104 adding 'starfish/spacetx_format/schema/experiment_5.0.0.json' 2020-06-18T03:05:04,107 adding 'starfish/spacetx_format/schema/extras.json' 2020-06-18T03:05:04,109 adding 'starfish/spacetx_format/schema/fov_manifest_0.0.0.json' 2020-06-18T03:05:04,112 adding 'starfish/spacetx_format/schema/fov_manifest_0.1.0.json' 2020-06-18T03:05:04,114 adding 'starfish/spacetx_format/schema/version.json' 2020-06-18T03:05:04,118 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codebook.json' 2020-06-18T03:05:04,121 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codeword.json' 2020-06-18T03:05:04,125 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json' 2020-06-18T03:05:04,129 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json' 2020-06-18T03:05:04,131 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json' 2020-06-18T03:05:04,134 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json' 2020-06-18T03:05:04,138 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json' 2020-06-18T03:05:04,142 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json' 2020-06-18T03:05:04,144 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json' 2020-06-18T03:05:04,147 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json' 2020-06-18T03:05:04,150 adding 'starfish/test/__init__.py' 2020-06-18T03:05:04,154 adding 'starfish/test/full_pipelines/__init__.py' 2020-06-18T03:05:04,158 adding 'starfish/test/full_pipelines/api/__init__.py' 2020-06-18T03:05:04,160 adding 'starfish/test/full_pipelines/api/test_allen_smFISH.py' 2020-06-18T03:05:04,163 adding 'starfish/test/full_pipelines/api/test_dartfish.py' 2020-06-18T03:05:04,167 adding 'starfish/test/full_pipelines/api/test_iss_api.py' 2020-06-18T03:05:04,169 adding 'starfish/test/full_pipelines/api/test_iss_doc_pipeline.py' 2020-06-18T03:05:04,173 adding 'starfish/test/full_pipelines/api/test_merfish.py' 2020-06-18T03:05:04,177 adding 'starfish/util/__init__.py' 2020-06-18T03:05:04,180 adding 'starfish/util/plot.py' 2020-06-18T03:05:04,185 adding 'starfish-0.2.1.dist-info/METADATA' 2020-06-18T03:05:04,187 adding 'starfish-0.2.1.dist-info/WHEEL' 2020-06-18T03:05:04,189 adding 'starfish-0.2.1.dist-info/entry_points.txt' 2020-06-18T03:05:04,191 adding 'starfish-0.2.1.dist-info/top_level.txt' 2020-06-18T03:05:04,198 adding 'starfish-0.2.1.dist-info/RECORD' 2020-06-18T03:05:04,242 removing build/bdist.linux-armv7l/wheel 2020-06-18T03:05:04,669 Building wheel for starfish (setup.py): finished with status 'done' 2020-06-18T03:05:04,679 Created wheel for starfish: filename=starfish-0.2.1-py3-none-any.whl size=367889 sha256=23a1b9f858903e905ef3004e2dda996e56fb9fcd90ae24f877011a8313667aeb 2020-06-18T03:05:04,679 Stored in directory: /tmp/pip-ephem-wheel-cache-h9wui3r_/wheels/d3/39/1f/b5d1453573e0642a81a718dc676b31e97dd5eecd7227211c22 2020-06-18T03:05:04,683 Successfully built starfish 2020-06-18T03:05:04,754 Removed build tracker: '/tmp/pip-req-tracker-zm1admlu'