2020-06-19T15:28:23,928 Created temporary directory: /tmp/pip-ephem-wheel-cache-8bwzakn_ 2020-06-19T15:28:23,933 Created temporary directory: /tmp/pip-req-tracker-dazkeagk 2020-06-19T15:28:23,933 Initialized build tracking at /tmp/pip-req-tracker-dazkeagk 2020-06-19T15:28:23,934 Created build tracker: /tmp/pip-req-tracker-dazkeagk 2020-06-19T15:28:23,934 Entered build tracker: /tmp/pip-req-tracker-dazkeagk 2020-06-19T15:28:23,936 Created temporary directory: /tmp/pip-wheel-dx9rzfkl 2020-06-19T15:28:23,949 1 location(s) to search for versions of propka: 2020-06-19T15:28:23,949 * https://pypi.org/simple/propka/ 2020-06-19T15:28:23,950 Fetching project page and analyzing links: https://pypi.org/simple/propka/ 2020-06-19T15:28:23,951 Getting page https://pypi.org/simple/propka/ 2020-06-19T15:28:23,953 Found index url https://pypi.org/simple 2020-06-19T15:28:24,154 Found link https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619 (from https://pypi.org/simple/propka/), version: 3.1.0 2020-06-19T15:28:24,155 Skipping link: No binaries permitted for propka: https://files.pythonhosted.org/packages/0a/8b/740338b380ad7657519bdd533446ea343891ffaec2cce8f67b58801a9d99/propka-3.2.0-py2.py3-none-any.whl#sha256=c88e4746175ca7649635b529019aeac71bd121e49feadba1a78d0bb7f2c239b6 (from https://pypi.org/simple/propka/) (requires-python:>=3.6) 2020-06-19T15:28:24,156 Found link https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec (from https://pypi.org/simple/propka/) (requires-python:>=3.6), version: 3.2.0 2020-06-19T15:28:24,164 Given no hashes to check 1 links for project 'propka': discarding no candidates 2020-06-19T15:28:24,165 Using version 3.2.0 (newest of versions: 3.2.0) 2020-06-19T15:28:24,171 Collecting propka==3.2.0 2020-06-19T15:28:24,174 Created temporary directory: /tmp/pip-unpack-2t2i9p1q 2020-06-19T15:28:24,384 Downloading propka-3.2.0.tar.gz (73 kB) 2020-06-19T15:28:24,663 Added propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec to build tracker '/tmp/pip-req-tracker-dazkeagk' 2020-06-19T15:28:24,666 Running setup.py (path:/tmp/pip-wheel-dx9rzfkl/propka/setup.py) egg_info for package propka 2020-06-19T15:28:24,668 Created temporary directory: /tmp/pip-pip-egg-info-jry_8e4s 2020-06-19T15:28:24,669 Running command python setup.py egg_info 2020-06-19T15:28:26,461 running egg_info 2020-06-19T15:28:26,465 creating /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info 2020-06-19T15:28:26,467 writing /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/PKG-INFO 2020-06-19T15:28:26,473 writing dependency_links to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/dependency_links.txt 2020-06-19T15:28:26,476 writing entry points to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/entry_points.txt 2020-06-19T15:28:26,480 writing top-level names to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/top_level.txt 2020-06-19T15:28:26,483 writing manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt' 2020-06-19T15:28:26,769 reading manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt' 2020-06-19T15:28:26,772 reading manifest template 'MANIFEST.in' 2020-06-19T15:28:26,774 warning: no files found matching 'INSTALL' 2020-06-19T15:28:26,775 warning: no files found matching 'propka.cfg' 2020-06-19T15:28:26,780 writing manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt' 2020-06-19T15:28:26,899 Source in /tmp/pip-wheel-dx9rzfkl/propka has version 3.2.0, which satisfies requirement propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec 2020-06-19T15:28:26,901 Removed propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec from build tracker '/tmp/pip-req-tracker-dazkeagk' 2020-06-19T15:28:26,905 Building wheels for collected packages: propka 2020-06-19T15:28:26,914 Created temporary directory: /tmp/pip-wheel-gd9tb1zu 2020-06-19T15:28:26,915 Building wheel for propka (setup.py): started 2020-06-19T15:28:26,916 Destination directory: /tmp/pip-wheel-gd9tb1zu 2020-06-19T15:28:26,916 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dx9rzfkl/propka/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dx9rzfkl/propka/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gd9tb1zu 2020-06-19T15:28:28,726 running bdist_wheel 2020-06-19T15:28:28,739 running build 2020-06-19T15:28:28,740 running build_py 2020-06-19T15:28:29,018 creating build 2020-06-19T15:28:29,018 creating build/lib 2020-06-19T15:28:29,020 creating build/lib/propka 2020-06-19T15:28:29,023 copying propka/molecular_container.py -> build/lib/propka 2020-06-19T15:28:29,028 copying propka/output.py -> build/lib/propka 2020-06-19T15:28:29,036 copying propka/protonate.py -> build/lib/propka 2020-06-19T15:28:29,043 copying propka/group.py -> build/lib/propka 2020-06-19T15:28:29,053 copying propka/ligand.py -> build/lib/propka 2020-06-19T15:28:29,060 copying propka/hydrogens.py -> build/lib/propka 2020-06-19T15:28:29,066 copying propka/determinants.py -> build/lib/propka 2020-06-19T15:28:29,073 copying propka/conformation_container.py -> build/lib/propka 2020-06-19T15:28:29,081 copying propka/calculations.py -> build/lib/propka 2020-06-19T15:28:29,086 copying propka/run.py -> build/lib/propka 2020-06-19T15:28:29,091 copying propka/ligand_pka_values.py -> build/lib/propka 2020-06-19T15:28:29,098 copying propka/parameters.py -> build/lib/propka 2020-06-19T15:28:29,105 copying propka/atom.py -> build/lib/propka 2020-06-19T15:28:29,112 copying propka/bonds.py -> build/lib/propka 2020-06-19T15:28:29,119 copying propka/determinant.py -> build/lib/propka 2020-06-19T15:28:29,125 copying propka/vector_algebra.py -> build/lib/propka 2020-06-19T15:28:29,131 copying propka/lib.py -> build/lib/propka 2020-06-19T15:28:29,138 copying propka/energy.py -> build/lib/propka 2020-06-19T15:28:29,146 copying propka/hybrid36.py -> build/lib/propka 2020-06-19T15:28:29,151 copying propka/coupled_groups.py -> build/lib/propka 2020-06-19T15:28:29,158 copying propka/__init__.py -> build/lib/propka 2020-06-19T15:28:29,163 copying propka/__main__.py -> build/lib/propka 2020-06-19T15:28:29,168 copying propka/iterative.py -> build/lib/propka 2020-06-19T15:28:29,175 copying propka/input.py -> build/lib/propka 2020-06-19T15:28:29,182 copying propka/version.py -> build/lib/propka 2020-06-19T15:28:29,198 copying propka/propka.cfg -> build/lib/propka 2020-06-19T15:28:29,204 copying propka/protein_bonds.json -> build/lib/propka 2020-06-19T15:28:29,218 installing to build/bdist.linux-armv7l/wheel 2020-06-19T15:28:29,218 running install 2020-06-19T15:28:29,220 running install_lib 2020-06-19T15:28:29,227 creating build/bdist.linux-armv7l 2020-06-19T15:28:29,228 creating build/bdist.linux-armv7l/wheel 2020-06-19T15:28:29,232 creating build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,235 copying build/lib/propka/molecular_container.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,241 copying build/lib/propka/output.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,247 copying build/lib/propka/protonate.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,253 copying build/lib/propka/group.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,263 copying build/lib/propka/ligand.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,270 copying build/lib/propka/hydrogens.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,277 copying build/lib/propka/determinants.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,284 copying build/lib/propka/conformation_container.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,292 copying build/lib/propka/calculations.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,298 copying build/lib/propka/run.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,303 copying build/lib/propka/ligand_pka_values.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,310 copying build/lib/propka/parameters.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,318 copying build/lib/propka/atom.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,325 copying build/lib/propka/bonds.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,333 copying build/lib/propka/determinant.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,338 copying build/lib/propka/vector_algebra.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,345 copying build/lib/propka/lib.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,353 copying build/lib/propka/energy.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,361 copying build/lib/propka/hybrid36.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,366 copying build/lib/propka/propka.cfg -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,373 copying build/lib/propka/coupled_groups.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,381 copying build/lib/propka/__init__.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,386 copying build/lib/propka/protein_bonds.json -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,392 copying build/lib/propka/__main__.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,397 copying build/lib/propka/iterative.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,405 copying build/lib/propka/input.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,412 copying build/lib/propka/version.py -> build/bdist.linux-armv7l/wheel/propka 2020-06-19T15:28:29,418 running install_egg_info 2020-06-19T15:28:29,463 running egg_info 2020-06-19T15:28:29,465 writing propka.egg-info/PKG-INFO 2020-06-19T15:28:29,469 writing dependency_links to propka.egg-info/dependency_links.txt 2020-06-19T15:28:29,473 writing entry points to propka.egg-info/entry_points.txt 2020-06-19T15:28:29,475 writing top-level names to propka.egg-info/top_level.txt 2020-06-19T15:28:29,487 reading manifest file 'propka.egg-info/SOURCES.txt' 2020-06-19T15:28:29,491 reading manifest template 'MANIFEST.in' 2020-06-19T15:28:29,493 warning: no files found matching 'INSTALL' 2020-06-19T15:28:29,493 warning: no files found matching 'propka.cfg' 2020-06-19T15:28:29,499 writing manifest file 'propka.egg-info/SOURCES.txt' 2020-06-19T15:28:29,503 Copying propka.egg-info to build/bdist.linux-armv7l/wheel/propka-3.2.0-py3.7.egg-info 2020-06-19T15:28:29,532 running install_scripts 2020-06-19T15:28:29,693 creating build/bdist.linux-armv7l/wheel/propka-3.2.0.dist-info/WHEEL 2020-06-19T15:28:29,698 creating '/tmp/pip-wheel-gd9tb1zu/propka-3.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-06-19T15:28:29,704 adding 'propka/__init__.py' 2020-06-19T15:28:29,706 adding 'propka/__main__.py' 2020-06-19T15:28:29,710 adding 'propka/atom.py' 2020-06-19T15:28:29,715 adding 'propka/bonds.py' 2020-06-19T15:28:29,717 adding 'propka/calculations.py' 2020-06-19T15:28:29,722 adding 'propka/conformation_container.py' 2020-06-19T15:28:29,727 adding 'propka/coupled_groups.py' 2020-06-19T15:28:29,729 adding 'propka/determinant.py' 2020-06-19T15:28:29,733 adding 'propka/determinants.py' 2020-06-19T15:28:29,737 adding 'propka/energy.py' 2020-06-19T15:28:29,746 adding 'propka/group.py' 2020-06-19T15:28:29,749 adding 'propka/hybrid36.py' 2020-06-19T15:28:29,752 adding 'propka/hydrogens.py' 2020-06-19T15:28:29,756 adding 'propka/input.py' 2020-06-19T15:28:29,760 adding 'propka/iterative.py' 2020-06-19T15:28:29,764 adding 'propka/lib.py' 2020-06-19T15:28:29,768 adding 'propka/ligand.py' 2020-06-19T15:28:29,771 adding 'propka/ligand_pka_values.py' 2020-06-19T15:28:29,775 adding 'propka/molecular_container.py' 2020-06-19T15:28:29,780 adding 'propka/output.py' 2020-06-19T15:28:29,785 adding 'propka/parameters.py' 2020-06-19T15:28:29,789 adding 'propka/propka.cfg' 2020-06-19T15:28:29,791 adding 'propka/protein_bonds.json' 2020-06-19T15:28:29,795 adding 'propka/protonate.py' 2020-06-19T15:28:29,798 adding 'propka/run.py' 2020-06-19T15:28:29,802 adding 'propka/vector_algebra.py' 2020-06-19T15:28:29,805 adding 'propka/version.py' 2020-06-19T15:28:29,810 adding 'propka-3.2.0.dist-info/METADATA' 2020-06-19T15:28:29,812 adding 'propka-3.2.0.dist-info/WHEEL' 2020-06-19T15:28:29,814 adding 'propka-3.2.0.dist-info/entry_points.txt' 2020-06-19T15:28:29,816 adding 'propka-3.2.0.dist-info/top_level.txt' 2020-06-19T15:28:29,817 adding 'propka-3.2.0.dist-info/zip-safe' 2020-06-19T15:28:29,819 adding 'propka-3.2.0.dist-info/RECORD' 2020-06-19T15:28:29,828 removing build/bdist.linux-armv7l/wheel 2020-06-19T15:28:29,986 Building wheel for propka (setup.py): finished with status 'done' 2020-06-19T15:28:29,991 Created wheel for propka: filename=propka-3.2.0-py2.py3-none-any.whl size=81670 sha256=1965ecb9d93409f548494e81b396da9913585b1b11e44771442efa3a8c253c0e 2020-06-19T15:28:29,992 Stored in directory: /tmp/pip-ephem-wheel-cache-8bwzakn_/wheels/84/c2/3e/9b8e383f3e7bb80fe6e2e00ec910cd186b7a82fe753e6f55e4 2020-06-19T15:28:29,996 Successfully built propka 2020-06-19T15:28:30,016 Removed build tracker: '/tmp/pip-req-tracker-dazkeagk'