2020-06-19T15:28:23,928 Created temporary directory: /tmp/pip-ephem-wheel-cache-8bwzakn_
2020-06-19T15:28:23,933 Created temporary directory: /tmp/pip-req-tracker-dazkeagk
2020-06-19T15:28:23,933 Initialized build tracking at /tmp/pip-req-tracker-dazkeagk
2020-06-19T15:28:23,934 Created build tracker: /tmp/pip-req-tracker-dazkeagk
2020-06-19T15:28:23,934 Entered build tracker: /tmp/pip-req-tracker-dazkeagk
2020-06-19T15:28:23,936 Created temporary directory: /tmp/pip-wheel-dx9rzfkl
2020-06-19T15:28:23,949 1 location(s) to search for versions of propka:
2020-06-19T15:28:23,949 * https://pypi.org/simple/propka/
2020-06-19T15:28:23,950 Fetching project page and analyzing links: https://pypi.org/simple/propka/
2020-06-19T15:28:23,951 Getting page https://pypi.org/simple/propka/
2020-06-19T15:28:23,953 Found index url https://pypi.org/simple
2020-06-19T15:28:24,154   Found link https://files.pythonhosted.org/packages/a3/7b/e935ce37cbf9ac8fe23ec05f8072fb3a63582b20fb01ef0c24502b5d10ba/PROPKA-3.1.0.tar.gz#sha256=ada690067c5ad9ca6be412491380929e5275fa41166aa1fb2c820fcc2dfdb619 (from https://pypi.org/simple/propka/), version: 3.1.0
2020-06-19T15:28:24,155   Skipping link: No binaries permitted for propka: https://files.pythonhosted.org/packages/0a/8b/740338b380ad7657519bdd533446ea343891ffaec2cce8f67b58801a9d99/propka-3.2.0-py2.py3-none-any.whl#sha256=c88e4746175ca7649635b529019aeac71bd121e49feadba1a78d0bb7f2c239b6 (from https://pypi.org/simple/propka/) (requires-python:>=3.6)
2020-06-19T15:28:24,156   Found link https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec (from https://pypi.org/simple/propka/) (requires-python:>=3.6), version: 3.2.0
2020-06-19T15:28:24,164 Given no hashes to check 1 links for project 'propka': discarding no candidates
2020-06-19T15:28:24,165 Using version 3.2.0 (newest of versions: 3.2.0)
2020-06-19T15:28:24,171 Collecting propka==3.2.0
2020-06-19T15:28:24,174   Created temporary directory: /tmp/pip-unpack-2t2i9p1q
2020-06-19T15:28:24,384   Downloading propka-3.2.0.tar.gz (73 kB)
2020-06-19T15:28:24,663   Added propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec to build tracker '/tmp/pip-req-tracker-dazkeagk'
2020-06-19T15:28:24,666     Running setup.py (path:/tmp/pip-wheel-dx9rzfkl/propka/setup.py) egg_info for package propka
2020-06-19T15:28:24,668     Created temporary directory: /tmp/pip-pip-egg-info-jry_8e4s
2020-06-19T15:28:24,669     Running command python setup.py egg_info
2020-06-19T15:28:26,461     running egg_info
2020-06-19T15:28:26,465     creating /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info
2020-06-19T15:28:26,467     writing /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/PKG-INFO
2020-06-19T15:28:26,473     writing dependency_links to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/dependency_links.txt
2020-06-19T15:28:26,476     writing entry points to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/entry_points.txt
2020-06-19T15:28:26,480     writing top-level names to /tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/top_level.txt
2020-06-19T15:28:26,483     writing manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt'
2020-06-19T15:28:26,769     reading manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt'
2020-06-19T15:28:26,772     reading manifest template 'MANIFEST.in'
2020-06-19T15:28:26,774     warning: no files found matching 'INSTALL'
2020-06-19T15:28:26,775     warning: no files found matching 'propka.cfg'
2020-06-19T15:28:26,780     writing manifest file '/tmp/pip-pip-egg-info-jry_8e4s/propka.egg-info/SOURCES.txt'
2020-06-19T15:28:26,899   Source in /tmp/pip-wheel-dx9rzfkl/propka has version 3.2.0, which satisfies requirement propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec
2020-06-19T15:28:26,901   Removed propka==3.2.0 from https://files.pythonhosted.org/packages/b5/e9/cae6da56022fa4e77bdffbb7827ba5bd1ee3f12814fd83086371618fdeff/propka-3.2.0.tar.gz#sha256=01b1c68a371ff0449e8e679aca281f71b75eadc2d9d7fb5b227bb929b4d079ec from build tracker '/tmp/pip-req-tracker-dazkeagk'
2020-06-19T15:28:26,905 Building wheels for collected packages: propka
2020-06-19T15:28:26,914   Created temporary directory: /tmp/pip-wheel-gd9tb1zu
2020-06-19T15:28:26,915   Building wheel for propka (setup.py): started
2020-06-19T15:28:26,916   Destination directory: /tmp/pip-wheel-gd9tb1zu
2020-06-19T15:28:26,916   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dx9rzfkl/propka/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dx9rzfkl/propka/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gd9tb1zu
2020-06-19T15:28:28,726   running bdist_wheel
2020-06-19T15:28:28,739   running build
2020-06-19T15:28:28,740   running build_py
2020-06-19T15:28:29,018   creating build
2020-06-19T15:28:29,018   creating build/lib
2020-06-19T15:28:29,020   creating build/lib/propka
2020-06-19T15:28:29,023   copying propka/molecular_container.py -> build/lib/propka
2020-06-19T15:28:29,028   copying propka/output.py -> build/lib/propka
2020-06-19T15:28:29,036   copying propka/protonate.py -> build/lib/propka
2020-06-19T15:28:29,043   copying propka/group.py -> build/lib/propka
2020-06-19T15:28:29,053   copying propka/ligand.py -> build/lib/propka
2020-06-19T15:28:29,060   copying propka/hydrogens.py -> build/lib/propka
2020-06-19T15:28:29,066   copying propka/determinants.py -> build/lib/propka
2020-06-19T15:28:29,073   copying propka/conformation_container.py -> build/lib/propka
2020-06-19T15:28:29,081   copying propka/calculations.py -> build/lib/propka
2020-06-19T15:28:29,086   copying propka/run.py -> build/lib/propka
2020-06-19T15:28:29,091   copying propka/ligand_pka_values.py -> build/lib/propka
2020-06-19T15:28:29,098   copying propka/parameters.py -> build/lib/propka
2020-06-19T15:28:29,105   copying propka/atom.py -> build/lib/propka
2020-06-19T15:28:29,112   copying propka/bonds.py -> build/lib/propka
2020-06-19T15:28:29,119   copying propka/determinant.py -> build/lib/propka
2020-06-19T15:28:29,125   copying propka/vector_algebra.py -> build/lib/propka
2020-06-19T15:28:29,131   copying propka/lib.py -> build/lib/propka
2020-06-19T15:28:29,138   copying propka/energy.py -> build/lib/propka
2020-06-19T15:28:29,146   copying propka/hybrid36.py -> build/lib/propka
2020-06-19T15:28:29,151   copying propka/coupled_groups.py -> build/lib/propka
2020-06-19T15:28:29,158   copying propka/__init__.py -> build/lib/propka
2020-06-19T15:28:29,163   copying propka/__main__.py -> build/lib/propka
2020-06-19T15:28:29,168   copying propka/iterative.py -> build/lib/propka
2020-06-19T15:28:29,175   copying propka/input.py -> build/lib/propka
2020-06-19T15:28:29,182   copying propka/version.py -> build/lib/propka
2020-06-19T15:28:29,198   copying propka/propka.cfg -> build/lib/propka
2020-06-19T15:28:29,204   copying propka/protein_bonds.json -> build/lib/propka
2020-06-19T15:28:29,218   installing to build/bdist.linux-armv7l/wheel
2020-06-19T15:28:29,218   running install
2020-06-19T15:28:29,220   running install_lib
2020-06-19T15:28:29,227   creating build/bdist.linux-armv7l
2020-06-19T15:28:29,228   creating build/bdist.linux-armv7l/wheel
2020-06-19T15:28:29,232   creating build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,235   copying build/lib/propka/molecular_container.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,241   copying build/lib/propka/output.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,247   copying build/lib/propka/protonate.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,253   copying build/lib/propka/group.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,263   copying build/lib/propka/ligand.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,270   copying build/lib/propka/hydrogens.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,277   copying build/lib/propka/determinants.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,284   copying build/lib/propka/conformation_container.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,292   copying build/lib/propka/calculations.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,298   copying build/lib/propka/run.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,303   copying build/lib/propka/ligand_pka_values.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,310   copying build/lib/propka/parameters.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,318   copying build/lib/propka/atom.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,325   copying build/lib/propka/bonds.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,333   copying build/lib/propka/determinant.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,338   copying build/lib/propka/vector_algebra.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,345   copying build/lib/propka/lib.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,353   copying build/lib/propka/energy.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,361   copying build/lib/propka/hybrid36.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,366   copying build/lib/propka/propka.cfg -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,373   copying build/lib/propka/coupled_groups.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,381   copying build/lib/propka/__init__.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,386   copying build/lib/propka/protein_bonds.json -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,392   copying build/lib/propka/__main__.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,397   copying build/lib/propka/iterative.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,405   copying build/lib/propka/input.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,412   copying build/lib/propka/version.py -> build/bdist.linux-armv7l/wheel/propka
2020-06-19T15:28:29,418   running install_egg_info
2020-06-19T15:28:29,463   running egg_info
2020-06-19T15:28:29,465   writing propka.egg-info/PKG-INFO
2020-06-19T15:28:29,469   writing dependency_links to propka.egg-info/dependency_links.txt
2020-06-19T15:28:29,473   writing entry points to propka.egg-info/entry_points.txt
2020-06-19T15:28:29,475   writing top-level names to propka.egg-info/top_level.txt
2020-06-19T15:28:29,487   reading manifest file 'propka.egg-info/SOURCES.txt'
2020-06-19T15:28:29,491   reading manifest template 'MANIFEST.in'
2020-06-19T15:28:29,493   warning: no files found matching 'INSTALL'
2020-06-19T15:28:29,493   warning: no files found matching 'propka.cfg'
2020-06-19T15:28:29,499   writing manifest file 'propka.egg-info/SOURCES.txt'
2020-06-19T15:28:29,503   Copying propka.egg-info to build/bdist.linux-armv7l/wheel/propka-3.2.0-py3.7.egg-info
2020-06-19T15:28:29,532   running install_scripts
2020-06-19T15:28:29,693   creating build/bdist.linux-armv7l/wheel/propka-3.2.0.dist-info/WHEEL
2020-06-19T15:28:29,698   creating '/tmp/pip-wheel-gd9tb1zu/propka-3.2.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-06-19T15:28:29,704   adding 'propka/__init__.py'
2020-06-19T15:28:29,706   adding 'propka/__main__.py'
2020-06-19T15:28:29,710   adding 'propka/atom.py'
2020-06-19T15:28:29,715   adding 'propka/bonds.py'
2020-06-19T15:28:29,717   adding 'propka/calculations.py'
2020-06-19T15:28:29,722   adding 'propka/conformation_container.py'
2020-06-19T15:28:29,727   adding 'propka/coupled_groups.py'
2020-06-19T15:28:29,729   adding 'propka/determinant.py'
2020-06-19T15:28:29,733   adding 'propka/determinants.py'
2020-06-19T15:28:29,737   adding 'propka/energy.py'
2020-06-19T15:28:29,746   adding 'propka/group.py'
2020-06-19T15:28:29,749   adding 'propka/hybrid36.py'
2020-06-19T15:28:29,752   adding 'propka/hydrogens.py'
2020-06-19T15:28:29,756   adding 'propka/input.py'
2020-06-19T15:28:29,760   adding 'propka/iterative.py'
2020-06-19T15:28:29,764   adding 'propka/lib.py'
2020-06-19T15:28:29,768   adding 'propka/ligand.py'
2020-06-19T15:28:29,771   adding 'propka/ligand_pka_values.py'
2020-06-19T15:28:29,775   adding 'propka/molecular_container.py'
2020-06-19T15:28:29,780   adding 'propka/output.py'
2020-06-19T15:28:29,785   adding 'propka/parameters.py'
2020-06-19T15:28:29,789   adding 'propka/propka.cfg'
2020-06-19T15:28:29,791   adding 'propka/protein_bonds.json'
2020-06-19T15:28:29,795   adding 'propka/protonate.py'
2020-06-19T15:28:29,798   adding 'propka/run.py'
2020-06-19T15:28:29,802   adding 'propka/vector_algebra.py'
2020-06-19T15:28:29,805   adding 'propka/version.py'
2020-06-19T15:28:29,810   adding 'propka-3.2.0.dist-info/METADATA'
2020-06-19T15:28:29,812   adding 'propka-3.2.0.dist-info/WHEEL'
2020-06-19T15:28:29,814   adding 'propka-3.2.0.dist-info/entry_points.txt'
2020-06-19T15:28:29,816   adding 'propka-3.2.0.dist-info/top_level.txt'
2020-06-19T15:28:29,817   adding 'propka-3.2.0.dist-info/zip-safe'
2020-06-19T15:28:29,819   adding 'propka-3.2.0.dist-info/RECORD'
2020-06-19T15:28:29,828   removing build/bdist.linux-armv7l/wheel
2020-06-19T15:28:29,986   Building wheel for propka (setup.py): finished with status 'done'
2020-06-19T15:28:29,991   Created wheel for propka: filename=propka-3.2.0-py2.py3-none-any.whl size=81670 sha256=1965ecb9d93409f548494e81b396da9913585b1b11e44771442efa3a8c253c0e
2020-06-19T15:28:29,992   Stored in directory: /tmp/pip-ephem-wheel-cache-8bwzakn_/wheels/84/c2/3e/9b8e383f3e7bb80fe6e2e00ec910cd186b7a82fe753e6f55e4
2020-06-19T15:28:29,996 Successfully built propka
2020-06-19T15:28:30,016 Removed build tracker: '/tmp/pip-req-tracker-dazkeagk'