2020-06-26T18:19:19,048 Created temporary directory: /tmp/pip-ephem-wheel-cache-abnkxcg6
2020-06-26T18:19:19,053 Created temporary directory: /tmp/pip-req-tracker-_de6r98e
2020-06-26T18:19:19,054 Initialized build tracking at /tmp/pip-req-tracker-_de6r98e
2020-06-26T18:19:19,057 Created build tracker: /tmp/pip-req-tracker-_de6r98e
2020-06-26T18:19:19,058 Entered build tracker: /tmp/pip-req-tracker-_de6r98e
2020-06-26T18:19:19,059 Created temporary directory: /tmp/pip-wheel-y6cy7k81
2020-06-26T18:19:19,076 1 location(s) to search for versions of pegasuspy:
2020-06-26T18:19:19,076 * https://pypi.org/simple/pegasuspy/
2020-06-26T18:19:19,077 Fetching project page and analyzing links: https://pypi.org/simple/pegasuspy/
2020-06-26T18:19:19,079 Getting page https://pypi.org/simple/pegasuspy/
2020-06-26T18:19:19,085 Found index url https://pypi.org/simple
2020-06-26T18:19:19,507   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/18/ca/713ebcc6bd0168cb4f45cf34c888e888512a1ea7f70939856c5136b53859/pegasuspy-0.15.0-py3-none-any.whl#sha256=9c39b39315856874099d288d4fe2b572876bfec1478ce351e24558317fa86d28 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,509   Found link https://files.pythonhosted.org/packages/f0/ff/83b88468fa01426d8e35da579a2e23a0be539c305ccd8841f2fa1c43fb10/pegasuspy-0.15.0.tar.gz#sha256=3bfe514a17b3b4d8f9a238777513617d7d428c39da725e2c12ff23a99f0c1490 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.15.0
2020-06-26T18:19:19,510   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/70/28/fb5d2565c284cd8d0dd548ec420f9f615aa2cb327860165ec284c604e241/pegasuspy-0.15.1rc1-py3-none-any.whl#sha256=197cf320fd21f2401ccf3cd5e11d703eb47bc452b8a042a010218520c5701e17 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,512   Found link https://files.pythonhosted.org/packages/d9/5c/91d87965f024c58407db76f321b01afac4c45ae51e314ca912d7109c6509/pegasuspy-0.15.1rc1.tar.gz#sha256=10ddd491afdfdbaf4c9b7da93d5daa564f3c8021defbd4d0cece36a487deca08 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.15.1rc1
2020-06-26T18:19:19,513   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/ff/fd/d1e08af21e655a7bf29043a4f3257212a76d558c72789428f56ecadbfe16/pegasuspy-0.16.0-py3-none-any.whl#sha256=7812ab44430697915b7d9a1ebb53a6feb3aa58476dd0242917b84aa0bc0bb482 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,515   Found link https://files.pythonhosted.org/packages/08/f8/28648c51a11e21b3fc46a61a2cbf2d65e2a00a0cef659afe2ad86c234695/pegasuspy-0.16.0.tar.gz#sha256=da74cfbdffd7f902bd867639c5a92d78a797c6f65ceb9e2688a3ab4bcb3cabe1 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.0
2020-06-26T18:19:19,516   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/65/f5/ff578f19dd8d2497ee31f5dc4a3d2c180c5621d17d48cb2e80eb706bfd44/pegasuspy-0.16.1-py3-none-any.whl#sha256=288d1e44d9b612eb5576dd8bac1d0c895113df6e41a965e9c187ed82ad41d9f5 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,517   Found link https://files.pythonhosted.org/packages/28/b0/21be63c85132b5fae7855e0ac9716dfc2553fa01c584df7404983a6692dd/pegasuspy-0.16.1.tar.gz#sha256=a25ce873742c2e8c52e01298f0068dacd869ec39b2c6431f220c373bc6db274d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.1
2020-06-26T18:19:19,518   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/79/8b/fd754c5701094271fc2df5c9bb4e55ec2b38f6cf0648cb5e1c369765823f/pegasuspy-0.16.2-py3-none-any.whl#sha256=8d10f9e91908402e295a75e410652c0de1d8fded761402397953ed7b45377f27 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,520   Found link https://files.pythonhosted.org/packages/98/84/d7e49539451149c617c2ed2daa6b5663b6cf37d17253844533ed648ae681/pegasuspy-0.16.2.tar.gz#sha256=57bb54bea118d0368da398987cdd1e412084b161baf1f06b802bb2687cd2464b (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.2
2020-06-26T18:19:19,521   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/0c/c2/ba4e3085e9ef4dd93e3b8c90ad8706488375134ed9db30b6564effe72af6/pegasuspy-0.16.3-py3-none-any.whl#sha256=686aee7e869dcc9468e3b88985eb3e42d944f47db3b59addc6355c5edc0f7ab8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,523   Found link https://files.pythonhosted.org/packages/81/82/83ea4bb5ae914d182c8a7b54d9ff616627241131572bbe0bf04e35d2e4b9/pegasuspy-0.16.3.tar.gz#sha256=02013e421d7f343e406e07e808bee5ff31e0b68847464d02b8640fa5bf959e42 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.3
2020-06-26T18:19:19,524   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/1a/bf/aa0b0c01c7ea922c49e14ab76d967801f269dc0c93f62dbc5eaf650e3428/pegasuspy-0.16.5-py3-none-any.whl#sha256=3e6d21ff56aed0b6a024abb477a5d7976e8b3d2da88431b2f24290fade257c49 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,527   Found link https://files.pythonhosted.org/packages/6d/93/712e3a84cc74372ce69d8bd6d1e131baa3368ecd16b412c3d6ee18fd43ab/pegasuspy-0.16.5.tar.gz#sha256=451ee56a1213a04eac19df5ae4046bbdadc7ce5d207a523cec086da26a616e1d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.5
2020-06-26T18:19:19,528   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/a1/f3/4a90343abce44d021479f012673fe5c069db2527528b731aadb5213d4658/pegasuspy-0.16.6-py3-none-any.whl#sha256=52a1e27e2dac8b60711fd6531cc5276c9750e4a42497906deab345793d5f952f (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,529   Found link https://files.pythonhosted.org/packages/8d/89/409cb8dc4f5812fa271274fe74aef225c092d3f1eacc9487455815e66dc9/pegasuspy-0.16.6.tar.gz#sha256=a213d10ee5512eb52ceeb66d39ab0f856e577551b5e7dffa59881b7685fb116e (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.6
2020-06-26T18:19:19,530   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/1b/36/d24d16b53b441faa2df90fc63302364b700ee4d318b28e306cb78342d12b/pegasuspy-0.16.7-py3-none-any.whl#sha256=1f9c89da7053ef44c8e8afe033e364b47e223b4495e790ff6235ccff6390a285 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,532   Found link https://files.pythonhosted.org/packages/50/58/35150627d1cf973677c0ed2b6326b3bf3359bf886738472d0f6981578f1d/pegasuspy-0.16.7.tar.gz#sha256=0ba937d860ccabf290077bb5c39d492bb145c7af5b8fe0788a4ea7471b5bb762 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.7
2020-06-26T18:19:19,533   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/29/e0/6a27caf0cffe0bbf3c98ebe983c679ce8b7514e74dd766a7a678a8d25ee2/pegasuspy-0.16.8-py3-none-any.whl#sha256=0b5ea3b887ed650d442e71c6ce4c4a81045907b189e2430eeeb045feada9d807 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,536   Found link https://files.pythonhosted.org/packages/b4/ff/56d89655ceb3a6d54c99893facdc392997e68008c6c2f863e468f9910da3/pegasuspy-0.16.8.tar.gz#sha256=1f82a6bd7af74b022641e9edebe77ae564d2188db18f6de8f1c4527f5f676435 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.8
2020-06-26T18:19:19,537   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/c6/2d/0686b95229722a40e35f01681a0c9ef0e0adadf481ac45fb906490862d51/pegasuspy-0.16.9-py3-none-any.whl#sha256=df066d0fe8ad50bf9a1709da8c2e5abd6e431b67258011e44b048c660e953bab (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,539   Found link https://files.pythonhosted.org/packages/87/98/2b914080c9c7e0ee1518e683b8720d0d5fba51edea00825170acdb7d9f08/pegasuspy-0.16.9.tar.gz#sha256=9a4cef861d93f886995606ce2f25d0fc4846ddde363e0e3cdec51f6364d97ca8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.9
2020-06-26T18:19:19,540   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/56/7e/d9bf005421a0b4238da0d6fca51c93fe3c7f415c0a96edbea4295133388a/pegasuspy-0.16.11-py3-none-any.whl#sha256=2da2a81b0c09b7e8939a94089c65effbbdc6e5b078cfd1ba1c8f259ab89dc58a (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,542   Found link https://files.pythonhosted.org/packages/48/08/a7654e7b48c5f26847a9586b7d5fbb54c23f40c71be18c27d12b3fcb0f9c/pegasuspy-0.16.11.tar.gz#sha256=4846dbca65a16aeba87b24e248f624c411fe595958e2cca4827b58601861d18f (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.16.11
2020-06-26T18:19:19,543   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/48/db/f9110046389772f47daf5d57b3fe79bd35f5441a78f7dd49e576af73e6a2/pegasuspy-0.17.0-py3-none-any.whl#sha256=ebaaa92c2db9f6e602965672375cf6b6df684b65e23511547710b1528613b87d (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,544   Found link https://files.pythonhosted.org/packages/1d/5c/29cddea5905aca1140c81da90f4c8574710ef4e217c698f0adbb0a5eb0c2/pegasuspy-0.17.0.tar.gz#sha256=855bf0ff3ddacea4c7b6554e5b3206db10d517b457f037d95807c9667e0fa9b7 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.17.0
2020-06-26T18:19:19,545   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/9e/f0/8bc6d3ca5ee1f9bcc1ba8f74a1b2555b382834f2bacc930c31a5613a4928/pegasuspy-0.17.1-py3-none-any.whl#sha256=e9ebad4ac73560a02eab8d2d2507a03d247016bbc33bdfcadbf0f4a8241dd4f7 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,547   Found link https://files.pythonhosted.org/packages/be/94/ec2021a44cd70dd8cc38b5a653eae86e2dc2e1f6a2ff7f1f5ee4bdc5d75c/pegasuspy-0.17.1.tar.gz#sha256=2ac5d7103ed08d0663557bf762359f3ce1561b5905f1b9648b405db133611d7c (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.17.1
2020-06-26T18:19:19,548   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/cf/0d/42e09240076676ebc9892c737d713598346904cc0f751ff74046b427ce83/pegasuspy-0.17.2-py3-none-any.whl#sha256=16ce9da6bcd15b509d9a7e7950bdcc8c8762428a98dbb8e0e35f1965b32b18d2 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,549   Found link https://files.pythonhosted.org/packages/0f/06/0d97ebdc2c49864a0d99f33b0a684fa063897f123fcd64c581fd1c439054/pegasuspy-0.17.2.tar.gz#sha256=22f14499723c3f4ef01a7c36ccde74a69aca80b69d4ff1e2a729da8a7bfca0a8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.17.2
2020-06-26T18:19:19,550   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/40/f3/31832c9000dc728271fb07d42518cfecdb560da5293d6b63ce64a5622bb0/pegasuspy-0.18.0b1-py3-none-any.whl#sha256=22f2c74d31ea42c29d0dfde340e9a9b6f944850ba360c03e9f572b42f78a9203 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,552   Found link https://files.pythonhosted.org/packages/ec/54/6c074602ceff8737efb1b600370062939f06246ead1c921e396a7f2beefe/pegasuspy-0.18.0b1.tar.gz#sha256=9d17c3982ec3b6a73f7f5e025f55cfdf556a023441e90452d6a45523db4c87e8 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.18.0b1
2020-06-26T18:19:19,553   Skipping link: No binaries permitted for pegasuspy: https://files.pythonhosted.org/packages/8f/66/7fbc7a1f2abd568fec647b3b4c3bc43833ff3094f2a92e21e7739e39e723/pegasuspy-0.18.0b2-py3-none-any.whl#sha256=364480829c66050f744299414b0e7c0ccdd8310a980ce15bf9e128bbdcc5adcb (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5)
2020-06-26T18:19:19,554   Found link https://files.pythonhosted.org/packages/8d/ff/38e260d6368cd7b41c7f05bc57cc4b2d05018f691d364c9883b51b3e80bb/pegasuspy-0.18.0b2.tar.gz#sha256=94b92687bd8d6379d7b4b83df6681c78c161a525dd6710b4f702e372ab2738a3 (from https://pypi.org/simple/pegasuspy/) (requires-python:~=3.5), version: 0.18.0b2
2020-06-26T18:19:19,572 Given no hashes to check 1 links for project 'pegasuspy': discarding no candidates
2020-06-26T18:19:19,574 Using version 0.17.2 (newest of versions: 0.17.2)
2020-06-26T18:19:19,581 Collecting pegasuspy==0.17.2
2020-06-26T18:19:19,587   Created temporary directory: /tmp/pip-unpack-lnf_oxlg
2020-06-26T18:19:19,693   Downloading pegasuspy-0.17.2.tar.gz (110 kB)
2020-06-26T18:19:20,305   Added pegasuspy==0.17.2 from https://files.pythonhosted.org/packages/0f/06/0d97ebdc2c49864a0d99f33b0a684fa063897f123fcd64c581fd1c439054/pegasuspy-0.17.2.tar.gz#sha256=22f14499723c3f4ef01a7c36ccde74a69aca80b69d4ff1e2a729da8a7bfca0a8 to build tracker '/tmp/pip-req-tracker-_de6r98e'
2020-06-26T18:19:20,308     Running setup.py (path:/tmp/pip-wheel-y6cy7k81/pegasuspy/setup.py) egg_info for package pegasuspy
2020-06-26T18:19:20,310     Created temporary directory: /tmp/pip-pip-egg-info-6glczm04
2020-06-26T18:19:20,314     Running command python setup.py egg_info
2020-06-26T18:19:30,438     running egg_info
2020-06-26T18:19:30,444     creating /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info
2020-06-26T18:19:30,446     writing top-level names to /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/top_level.txt
2020-06-26T18:19:30,449     writing dependency_links to /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/dependency_links.txt
2020-06-26T18:19:30,451     writing /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/PKG-INFO
2020-06-26T18:19:30,456     writing entry points to /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/entry_points.txt
2020-06-26T18:19:30,459     writing requirements to /tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/requires.txt
2020-06-26T18:19:30,466     writing manifest file '/tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/SOURCES.txt'
2020-06-26T18:19:31,017     reading manifest file '/tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/SOURCES.txt'
2020-06-26T18:19:31,024     reading manifest template 'MANIFEST.in'
2020-06-26T18:19:31,028     warning: no previously-included files found matching 'tests/*'
2020-06-26T18:19:31,029     warning: no previously-included files found matching 'docs/**'
2020-06-26T18:19:31,031     warning: no previously-included files found matching 'notebooks/*'
2020-06-26T18:19:31,033     warning: no previously-included files found matching 'CODE_OF_CONDUCT.md'
2020-06-26T18:19:31,034     warning: no previously-included files found matching 'CONTRIBUTING.md'
2020-06-26T18:19:31,036     warning: no previously-included files found matching 'Dockerfile'
2020-06-26T18:19:31,038     warning: no previously-included files found matching 'Guide_containerized_vm.rst'
2020-06-26T18:19:31,039     warning: no previously-included files found matching 'pyproject.toml'
2020-06-26T18:19:31,042     warning: no previously-included files found matching '.*'
2020-06-26T18:19:31,054     writing manifest file '/tmp/pip-pip-egg-info-6glczm04/pegasuspy.egg-info/SOURCES.txt'
2020-06-26T18:19:31,296   Source in /tmp/pip-wheel-y6cy7k81/pegasuspy has version 0.17.2, which satisfies requirement pegasuspy==0.17.2 from https://files.pythonhosted.org/packages/0f/06/0d97ebdc2c49864a0d99f33b0a684fa063897f123fcd64c581fd1c439054/pegasuspy-0.17.2.tar.gz#sha256=22f14499723c3f4ef01a7c36ccde74a69aca80b69d4ff1e2a729da8a7bfca0a8
2020-06-26T18:19:31,299   Removed pegasuspy==0.17.2 from https://files.pythonhosted.org/packages/0f/06/0d97ebdc2c49864a0d99f33b0a684fa063897f123fcd64c581fd1c439054/pegasuspy-0.17.2.tar.gz#sha256=22f14499723c3f4ef01a7c36ccde74a69aca80b69d4ff1e2a729da8a7bfca0a8 from build tracker '/tmp/pip-req-tracker-_de6r98e'
2020-06-26T18:19:31,312 Building wheels for collected packages: pegasuspy
2020-06-26T18:19:31,326   Created temporary directory: /tmp/pip-wheel-qluv_3kt
2020-06-26T18:19:31,328   Building wheel for pegasuspy (setup.py): started
2020-06-26T18:19:31,329   Destination directory: /tmp/pip-wheel-qluv_3kt
2020-06-26T18:19:31,330   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y6cy7k81/pegasuspy/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y6cy7k81/pegasuspy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qluv_3kt
2020-06-26T18:19:35,500   running bdist_wheel
2020-06-26T18:19:35,507   running build
2020-06-26T18:19:35,508   running build_py
2020-06-26T18:19:35,881   creating build
2020-06-26T18:19:35,882   creating build/lib
2020-06-26T18:19:35,883   creating build/lib/pegasus
2020-06-26T18:19:35,886   copying pegasus/__main__.py -> build/lib/pegasus
2020-06-26T18:19:35,890   copying pegasus/__init__.py -> build/lib/pegasus
2020-06-26T18:19:35,896   creating build/lib/pegasus/demuxEM
2020-06-26T18:19:35,898   copying pegasus/demuxEM/plot.py -> build/lib/pegasus/demuxEM
2020-06-26T18:19:35,904   copying pegasus/demuxEM/down_sampling.py -> build/lib/pegasus/demuxEM
2020-06-26T18:19:35,909   copying pegasus/demuxEM/__init__.py -> build/lib/pegasus/demuxEM
2020-06-26T18:19:35,913   copying pegasus/demuxEM/demuxEM.py -> build/lib/pegasus/demuxEM
2020-06-26T18:19:35,921   creating build/lib/pegasus/commands
2020-06-26T18:19:35,922   copying pegasus/commands/CITESeq.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,928   copying pegasus/commands/PARQUET.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,933   copying pegasus/commands/SubClustering.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,942   copying pegasus/commands/DemuxEM.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,949   copying pegasus/commands/SCPOutput.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,953   copying pegasus/commands/FindMarkers.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,959   copying pegasus/commands/Enrichment.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,964   copying pegasus/commands/AnnotateCluster.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,970   copying pegasus/commands/AggregateMatrix.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,977   copying pegasus/commands/DeAnalysis.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,981   copying pegasus/commands/CheckSampleIndexes.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,986   copying pegasus/commands/iPlotting.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,991   copying pegasus/commands/Plotting.py -> build/lib/pegasus/commands
2020-06-26T18:19:35,997   copying pegasus/commands/DownSample.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,002   copying pegasus/commands/Base.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,006   copying pegasus/commands/__init__.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,011   copying pegasus/commands/ConvertH5SC.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,016   copying pegasus/commands/View.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,020   copying pegasus/commands/Clustering.py -> build/lib/pegasus/commands
2020-06-26T18:19:36,028   creating build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,030   copying pegasus/annotate_cluster/annotate_cluster.py -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,037   copying pegasus/annotate_cluster/__init__.py -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,042   creating build/lib/pegasus/pipeline
2020-06-26T18:19:36,044   copying pegasus/pipeline/pipeline.py -> build/lib/pegasus/pipeline
2020-06-26T18:19:36,051   copying pegasus/pipeline/__init__.py -> build/lib/pegasus/pipeline
2020-06-26T18:19:36,055   copying pegasus/pipeline/demuxEM_pipeline.py -> build/lib/pegasus/pipeline
2020-06-26T18:19:36,061   creating build/lib/pegasus/check_sample_indexes
2020-06-26T18:19:36,063   copying pegasus/check_sample_indexes/__init__.py -> build/lib/pegasus/check_sample_indexes
2020-06-26T18:19:36,068   copying pegasus/check_sample_indexes/check_sample_indexes.py -> build/lib/pegasus/check_sample_indexes
2020-06-26T18:19:36,073   creating build/lib/pegasus/cite_seq
2020-06-26T18:19:36,074   copying pegasus/cite_seq/cite_seq.py -> build/lib/pegasus/cite_seq
2020-06-26T18:19:36,079   copying pegasus/cite_seq/__init__.py -> build/lib/pegasus/cite_seq
2020-06-26T18:19:36,086   creating build/lib/pegasus/tools
2020-06-26T18:19:36,087   copying pegasus/tools/diffusion_map.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,094   copying pegasus/tools/hvf_selection.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,101   copying pegasus/tools/visualization.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,111   copying pegasus/tools/down_sampling.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,116   copying pegasus/tools/preprocessing.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,123   copying pegasus/tools/diff_expr.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,133   copying pegasus/tools/enrichment.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,138   copying pegasus/tools/graph_operations.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,145   copying pegasus/tools/net_regressor.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,153   copying pegasus/tools/clustering.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,159   copying pegasus/tools/pseudotime.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,167   copying pegasus/tools/batch_correction.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,176   copying pegasus/tools/__init__.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,180   copying pegasus/tools/subcluster_utils.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,188   copying pegasus/tools/convert_to_parquet.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,193   copying pegasus/tools/data_aggregation.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,199   copying pegasus/tools/signature_score.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,203   copying pegasus/tools/nearest_neighbors.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,210   copying pegasus/tools/utils.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,215   copying pegasus/tools/scp_output.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,221   copying pegasus/tools/gradient_boosting.py -> build/lib/pegasus/tools
2020-06-26T18:19:36,228   creating build/lib/pegasus/plotting
2020-06-26T18:19:36,231   copying pegasus/plotting/run_plotting.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,236   copying pegasus/plotting/plot_qc.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,241   copying pegasus/plotting/iplot_library.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,246   copying pegasus/plotting/__init__.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,250   copying pegasus/plotting/plot_library.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,258   copying pegasus/plotting/plot_utils.py -> build/lib/pegasus/plotting
2020-06-26T18:19:36,264   creating build/lib/pegasus/utils
2020-06-26T18:19:36,267   copying pegasus/utils/decorators.py -> build/lib/pegasus/utils
2020-06-26T18:19:36,272   copying pegasus/utils/__init__.py -> build/lib/pegasus/utils
2020-06-26T18:19:36,278   creating build/lib/pegasus/misc
2020-06-26T18:19:36,280   copying pegasus/misc/__init__.py -> build/lib/pegasus/misc
2020-06-26T18:19:36,285   copying pegasus/misc/misc.py -> build/lib/pegasus/misc
2020-06-26T18:19:36,292   creating build/lib/pegasus/io
2020-06-26T18:19:36,295   copying pegasus/io/anndata_legacy.py -> build/lib/pegasus/io
2020-06-26T18:19:36,301   copying pegasus/io/data_structure.py -> build/lib/pegasus/io
2020-06-26T18:19:36,308   copying pegasus/io/__init__.py -> build/lib/pegasus/io
2020-06-26T18:19:36,311   copying pegasus/io/io.py -> build/lib/pegasus/io
2020-06-26T18:19:36,329   copying pegasus/annotate_cluster/human_immune_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,337   copying pegasus/annotate_cluster/mouse_immune_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,342   copying pegasus/annotate_cluster/mouse_brain_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,347   copying pegasus/annotate_cluster/human_brain_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,352   copying pegasus/annotate_cluster/human_lung_cell_markers.json -> build/lib/pegasus/annotate_cluster
2020-06-26T18:19:36,358   copying pegasus/check_sample_indexes/chromium-dna-sample-indexes-plate.json -> build/lib/pegasus/check_sample_indexes
2020-06-26T18:19:36,386   installing to build/bdist.linux-armv7l/wheel
2020-06-26T18:19:36,387   running install
2020-06-26T18:19:36,390   running install_lib
2020-06-26T18:19:36,397   creating build/bdist.linux-armv7l
2020-06-26T18:19:36,398   creating build/bdist.linux-armv7l/wheel
2020-06-26T18:19:36,402   creating build/bdist.linux-armv7l/wheel/pegasus
2020-06-26T18:19:36,404   copying build/lib/pegasus/__main__.py -> build/bdist.linux-armv7l/wheel/pegasus
2020-06-26T18:19:36,410   creating build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-26T18:19:36,412   copying build/lib/pegasus/demuxEM/plot.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-26T18:19:36,419   copying build/lib/pegasus/demuxEM/down_sampling.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-26T18:19:36,424   copying build/lib/pegasus/demuxEM/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-26T18:19:36,430   copying build/lib/pegasus/demuxEM/demuxEM.py -> build/bdist.linux-armv7l/wheel/pegasus/demuxEM
2020-06-26T18:19:36,438   creating build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,441   copying build/lib/pegasus/commands/CITESeq.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,447   copying build/lib/pegasus/commands/PARQUET.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,453   copying build/lib/pegasus/commands/SubClustering.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,459   copying build/lib/pegasus/commands/DemuxEM.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,465   copying build/lib/pegasus/commands/SCPOutput.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,470   copying build/lib/pegasus/commands/FindMarkers.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,475   copying build/lib/pegasus/commands/Enrichment.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,483   copying build/lib/pegasus/commands/AnnotateCluster.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,487   copying build/lib/pegasus/commands/AggregateMatrix.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,496   copying build/lib/pegasus/commands/DeAnalysis.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,499   copying build/lib/pegasus/commands/CheckSampleIndexes.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,507   copying build/lib/pegasus/commands/iPlotting.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,510   copying build/lib/pegasus/commands/Plotting.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,518   copying build/lib/pegasus/commands/DownSample.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,523   copying build/lib/pegasus/commands/Base.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,528   copying build/lib/pegasus/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,532   copying build/lib/pegasus/commands/ConvertH5SC.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,537   copying build/lib/pegasus/commands/View.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,542   copying build/lib/pegasus/commands/Clustering.py -> build/bdist.linux-armv7l/wheel/pegasus/commands
2020-06-26T18:19:36,551   copying build/lib/pegasus/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus
2020-06-26T18:19:36,558   creating build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,560   copying build/lib/pegasus/annotate_cluster/annotate_cluster.py -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,567   copying build/lib/pegasus/annotate_cluster/human_brain_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,571   copying build/lib/pegasus/annotate_cluster/human_lung_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,577   copying build/lib/pegasus/annotate_cluster/human_immune_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,583   copying build/lib/pegasus/annotate_cluster/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,589   copying build/lib/pegasus/annotate_cluster/mouse_brain_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,595   copying build/lib/pegasus/annotate_cluster/mouse_immune_cell_markers.json -> build/bdist.linux-armv7l/wheel/pegasus/annotate_cluster
2020-06-26T18:19:36,603   creating build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-26T18:19:36,605   copying build/lib/pegasus/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-26T18:19:36,613   copying build/lib/pegasus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-26T18:19:36,619   copying build/lib/pegasus/pipeline/demuxEM_pipeline.py -> build/bdist.linux-armv7l/wheel/pegasus/pipeline
2020-06-26T18:19:36,625   creating build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-26T18:19:36,627   copying build/lib/pegasus/check_sample_indexes/chromium-dna-sample-indexes-plate.json -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-26T18:19:36,633   copying build/lib/pegasus/check_sample_indexes/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-26T18:19:36,637   copying build/lib/pegasus/check_sample_indexes/check_sample_indexes.py -> build/bdist.linux-armv7l/wheel/pegasus/check_sample_indexes
2020-06-26T18:19:36,644   creating build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-26T18:19:36,646   copying build/lib/pegasus/cite_seq/cite_seq.py -> build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-26T18:19:36,653   copying build/lib/pegasus/cite_seq/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/cite_seq
2020-06-26T18:19:36,662   creating build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,663   copying build/lib/pegasus/tools/diffusion_map.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,669   copying build/lib/pegasus/tools/hvf_selection.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,675   copying build/lib/pegasus/tools/visualization.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,684   copying build/lib/pegasus/tools/down_sampling.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,688   copying build/lib/pegasus/tools/preprocessing.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,694   copying build/lib/pegasus/tools/diff_expr.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,702   copying build/lib/pegasus/tools/enrichment.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,707   copying build/lib/pegasus/tools/graph_operations.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,711   copying build/lib/pegasus/tools/net_regressor.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,716   copying build/lib/pegasus/tools/clustering.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,722   copying build/lib/pegasus/tools/pseudotime.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,727   copying build/lib/pegasus/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,732   copying build/lib/pegasus/tools/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,736   copying build/lib/pegasus/tools/subcluster_utils.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,741   copying build/lib/pegasus/tools/convert_to_parquet.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,745   copying build/lib/pegasus/tools/data_aggregation.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,750   copying build/lib/pegasus/tools/signature_score.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,755   copying build/lib/pegasus/tools/nearest_neighbors.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,760   copying build/lib/pegasus/tools/utils.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,766   copying build/lib/pegasus/tools/scp_output.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,772   copying build/lib/pegasus/tools/gradient_boosting.py -> build/bdist.linux-armv7l/wheel/pegasus/tools
2020-06-26T18:19:36,782   creating build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,786   copying build/lib/pegasus/plotting/run_plotting.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,789   copying build/lib/pegasus/plotting/plot_qc.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,794   copying build/lib/pegasus/plotting/iplot_library.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,798   copying build/lib/pegasus/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,804   copying build/lib/pegasus/plotting/plot_library.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,812   copying build/lib/pegasus/plotting/plot_utils.py -> build/bdist.linux-armv7l/wheel/pegasus/plotting
2020-06-26T18:19:36,818   creating build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-26T18:19:36,820   copying build/lib/pegasus/utils/decorators.py -> build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-26T18:19:36,826   copying build/lib/pegasus/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/utils
2020-06-26T18:19:36,834   creating build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-26T18:19:36,836   copying build/lib/pegasus/misc/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-26T18:19:36,841   copying build/lib/pegasus/misc/misc.py -> build/bdist.linux-armv7l/wheel/pegasus/misc
2020-06-26T18:19:36,849   creating build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-26T18:19:36,851   copying build/lib/pegasus/io/anndata_legacy.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-26T18:19:36,857   copying build/lib/pegasus/io/data_structure.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-26T18:19:36,876   copying build/lib/pegasus/io/__init__.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-26T18:19:36,881   copying build/lib/pegasus/io/io.py -> build/bdist.linux-armv7l/wheel/pegasus/io
2020-06-26T18:19:36,888   running install_egg_info
2020-06-26T18:19:36,899   running egg_info
2020-06-26T18:19:36,901   writing dependency_links to pegasuspy.egg-info/dependency_links.txt
2020-06-26T18:19:36,904   writing pegasuspy.egg-info/PKG-INFO
2020-06-26T18:19:36,910   writing top-level names to pegasuspy.egg-info/top_level.txt
2020-06-26T18:19:36,914   writing entry points to pegasuspy.egg-info/entry_points.txt
2020-06-26T18:19:36,919   writing requirements to pegasuspy.egg-info/requires.txt
2020-06-26T18:19:37,009   reading manifest file 'pegasuspy.egg-info/SOURCES.txt'
2020-06-26T18:19:37,020   reading manifest template 'MANIFEST.in'
2020-06-26T18:19:37,026   warning: no previously-included files found matching 'tests/*'
2020-06-26T18:19:37,033   warning: no previously-included files found matching 'docs/**'
2020-06-26T18:19:37,040   warning: no previously-included files found matching 'notebooks/*'
2020-06-26T18:19:37,041   warning: no previously-included files found matching 'CODE_OF_CONDUCT.md'
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2020-06-26T18:19:37,045   warning: no previously-included files found matching 'Dockerfile'
2020-06-26T18:19:37,049   warning: no previously-included files found matching 'Guide_containerized_vm.rst'
2020-06-26T18:19:37,051   warning: no previously-included files found matching 'pyproject.toml'
2020-06-26T18:19:37,053   warning: no previously-included files found matching '.*'
2020-06-26T18:19:37,071   writing manifest file 'pegasuspy.egg-info/SOURCES.txt'
2020-06-26T18:19:37,075   Copying pegasuspy.egg-info to build/bdist.linux-armv7l/wheel/pegasuspy-0.17.2-py3.5.egg-info
2020-06-26T18:19:37,106   running install_scripts
2020-06-26T18:19:37,316   creating build/bdist.linux-armv7l/wheel/pegasuspy-0.17.2.dist-info/WHEEL
2020-06-26T18:19:38,028   Building wheel for pegasuspy (setup.py): finished with status 'done'
2020-06-26T18:19:38,035   Created wheel for pegasuspy: filename=pegasuspy-0.17.2-py3-none-any.whl size=141481 sha256=ea1097418e8ff18f98999472966d2474189faf32019fb700c972855ed4853a51
2020-06-26T18:19:38,036   Stored in directory: /tmp/pip-ephem-wheel-cache-abnkxcg6/wheels/88/f1/59/60733921d01f62b1b925b905bc8594b8f0eb110d8824a1c107
2020-06-26T18:19:38,041 Successfully built pegasuspy
2020-06-26T18:19:38,073 Removed build tracker: '/tmp/pip-req-tracker-_de6r98e'