2020-06-30T18:38:08,754 Created temporary directory: /tmp/pip-ephem-wheel-cache-voel1ni6
2020-06-30T18:38:08,758 Created temporary directory: /tmp/pip-req-tracker-ay7g0cu7
2020-06-30T18:38:08,759 Initialized build tracking at /tmp/pip-req-tracker-ay7g0cu7
2020-06-30T18:38:08,760 Created build tracker: /tmp/pip-req-tracker-ay7g0cu7
2020-06-30T18:38:08,760 Entered build tracker: /tmp/pip-req-tracker-ay7g0cu7
2020-06-30T18:38:08,761 Created temporary directory: /tmp/pip-wheel-2fkc_snu
2020-06-30T18:38:08,778 1 location(s) to search for versions of RagTag:
2020-06-30T18:38:08,778 * https://pypi.org/simple/ragtag/
2020-06-30T18:38:08,779 Fetching project page and analyzing links: https://pypi.org/simple/ragtag/
2020-06-30T18:38:08,780 Getting page https://pypi.org/simple/ragtag/
2020-06-30T18:38:08,782 Found index url https://pypi.org/simple
2020-06-30T18:38:09,009   Skipping link: No binaries permitted for RagTag: https://files.pythonhosted.org/packages/ab/7f/4750738e2c86765698ebff9c0960090ceb518d4975d8341a466c795d3e7b/RagTag-1.0.0-py3-none-any.whl#sha256=b11a1ea1096382d69b4f707adb21293a97265461474e7904f68a5db496871750 (from https://pypi.org/simple/ragtag/) (requires-python:>=3.6)
2020-06-30T18:38:09,010   Found link https://files.pythonhosted.org/packages/e3/59/238f983c31df596d5b87b4a22b19969035799a393072ff44c0fb081fa892/RagTag-1.0.0.tar.gz#sha256=f1c5dfdb05efddc0e3fc04f512e764e6d6ab3d7c7c796c8ca42f6ef50d5120a7 (from https://pypi.org/simple/ragtag/) (requires-python:>=3.6), version: 1.0.0
2020-06-30T18:38:09,018 Given no hashes to check 1 links for project 'RagTag': discarding no candidates
2020-06-30T18:38:09,019 Using version 1.0.0 (newest of versions: 1.0.0)
2020-06-30T18:38:09,024 Collecting RagTag==1.0.0
2020-06-30T18:38:09,027   Created temporary directory: /tmp/pip-unpack-i2208l3b
2020-06-30T18:38:09,242   Downloading RagTag-1.0.0.tar.gz (27 kB)
2020-06-30T18:38:09,397   Added RagTag==1.0.0 from https://files.pythonhosted.org/packages/e3/59/238f983c31df596d5b87b4a22b19969035799a393072ff44c0fb081fa892/RagTag-1.0.0.tar.gz#sha256=f1c5dfdb05efddc0e3fc04f512e764e6d6ab3d7c7c796c8ca42f6ef50d5120a7 to build tracker '/tmp/pip-req-tracker-ay7g0cu7'
2020-06-30T18:38:09,399     Running setup.py (path:/tmp/pip-wheel-2fkc_snu/RagTag/setup.py) egg_info for package RagTag
2020-06-30T18:38:09,400     Created temporary directory: /tmp/pip-pip-egg-info-e8rrh5zx
2020-06-30T18:38:09,401     Running command python setup.py egg_info
2020-06-30T18:38:11,151     running egg_info
2020-06-30T18:38:11,155     creating /tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info
2020-06-30T18:38:11,157     writing /tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/PKG-INFO
2020-06-30T18:38:11,163     writing dependency_links to /tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/dependency_links.txt
2020-06-30T18:38:11,168     writing requirements to /tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/requires.txt
2020-06-30T18:38:11,170     writing top-level names to /tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/top_level.txt
2020-06-30T18:38:11,174     writing manifest file '/tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/SOURCES.txt'
2020-06-30T18:38:11,482     reading manifest file '/tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/SOURCES.txt'
2020-06-30T18:38:11,490     writing manifest file '/tmp/pip-pip-egg-info-e8rrh5zx/RagTag.egg-info/SOURCES.txt'
2020-06-30T18:38:11,609   Source in /tmp/pip-wheel-2fkc_snu/RagTag has version 1.0.0, which satisfies requirement RagTag==1.0.0 from https://files.pythonhosted.org/packages/e3/59/238f983c31df596d5b87b4a22b19969035799a393072ff44c0fb081fa892/RagTag-1.0.0.tar.gz#sha256=f1c5dfdb05efddc0e3fc04f512e764e6d6ab3d7c7c796c8ca42f6ef50d5120a7
2020-06-30T18:38:11,611   Removed RagTag==1.0.0 from https://files.pythonhosted.org/packages/e3/59/238f983c31df596d5b87b4a22b19969035799a393072ff44c0fb081fa892/RagTag-1.0.0.tar.gz#sha256=f1c5dfdb05efddc0e3fc04f512e764e6d6ab3d7c7c796c8ca42f6ef50d5120a7 from build tracker '/tmp/pip-req-tracker-ay7g0cu7'
2020-06-30T18:38:11,615 Building wheels for collected packages: RagTag
2020-06-30T18:38:11,624   Created temporary directory: /tmp/pip-wheel-y4gwyy9t
2020-06-30T18:38:11,625   Building wheel for RagTag (setup.py): started
2020-06-30T18:38:11,626   Destination directory: /tmp/pip-wheel-y4gwyy9t
2020-06-30T18:38:11,626   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2fkc_snu/RagTag/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2fkc_snu/RagTag/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-y4gwyy9t
2020-06-30T18:38:13,344   running bdist_wheel
2020-06-30T18:38:13,356   running build
2020-06-30T18:38:13,357   running build_py
2020-06-30T18:38:13,631   creating build
2020-06-30T18:38:13,631   creating build/lib
2020-06-30T18:38:13,633   creating build/lib/ragtag_utilities
2020-06-30T18:38:13,635   copying ragtag_utilities/__init__.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,639   copying ragtag_utilities/utilities.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,643   copying ragtag_utilities/AlignmentReader.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,647   copying ragtag_utilities/AGPFile.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,653   copying ragtag_utilities/ContigAlignment.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,660   copying ragtag_utilities/Aligner.py -> build/lib/ragtag_utilities
2020-06-30T18:38:13,669   running build_scripts
2020-06-30T18:38:13,670   creating build/scripts-3.7
2020-06-30T18:38:13,674   copying and adjusting ragtag_update_gff.py -> build/scripts-3.7
2020-06-30T18:38:13,679   copying and adjusting ragtag_delta2paf.py -> build/scripts-3.7
2020-06-30T18:38:13,684   copying and adjusting ragtag_stats.py -> build/scripts-3.7
2020-06-30T18:38:13,688   copying and adjusting ragtag_correct.py -> build/scripts-3.7
2020-06-30T18:38:13,695   copying and adjusting ragtag_break_query.py -> build/scripts-3.7
2020-06-30T18:38:13,700   copying and adjusting ragtag_agp2fasta.py -> build/scripts-3.7
2020-06-30T18:38:13,705   copying and adjusting ragtag_scaffold.py -> build/scripts-3.7
2020-06-30T18:38:13,713   copying and adjusting setup.py -> build/scripts-3.7
2020-06-30T18:38:13,718   copying and adjusting ragtag.py -> build/scripts-3.7
2020-06-30T18:38:13,720   changing mode of build/scripts-3.7/ragtag_update_gff.py from 644 to 755
2020-06-30T18:38:13,720   changing mode of build/scripts-3.7/ragtag_delta2paf.py from 644 to 755
2020-06-30T18:38:13,721   changing mode of build/scripts-3.7/ragtag_stats.py from 644 to 755
2020-06-30T18:38:13,722   changing mode of build/scripts-3.7/ragtag_correct.py from 644 to 755
2020-06-30T18:38:13,722   changing mode of build/scripts-3.7/ragtag_break_query.py from 644 to 755
2020-06-30T18:38:13,723   changing mode of build/scripts-3.7/ragtag_agp2fasta.py from 644 to 755
2020-06-30T18:38:13,723   changing mode of build/scripts-3.7/ragtag_scaffold.py from 644 to 755
2020-06-30T18:38:13,724   changing mode of build/scripts-3.7/setup.py from 644 to 755
2020-06-30T18:38:13,725   changing mode of build/scripts-3.7/ragtag.py from 644 to 755
2020-06-30T18:38:13,731   installing to build/bdist.linux-armv7l/wheel
2020-06-30T18:38:13,731   running install
2020-06-30T18:38:13,733   running install_lib
2020-06-30T18:38:13,740   creating build/bdist.linux-armv7l
2020-06-30T18:38:13,741   creating build/bdist.linux-armv7l/wheel
2020-06-30T18:38:13,745   creating build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,747   copying build/lib/ragtag_utilities/__init__.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,751   copying build/lib/ragtag_utilities/utilities.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,756   copying build/lib/ragtag_utilities/AlignmentReader.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,761   copying build/lib/ragtag_utilities/AGPFile.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,769   copying build/lib/ragtag_utilities/ContigAlignment.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,776   copying build/lib/ragtag_utilities/Aligner.py -> build/bdist.linux-armv7l/wheel/ragtag_utilities
2020-06-30T18:38:13,782   running install_egg_info
2020-06-30T18:38:13,828   running egg_info
2020-06-30T18:38:13,829   writing RagTag.egg-info/PKG-INFO
2020-06-30T18:38:13,833   writing dependency_links to RagTag.egg-info/dependency_links.txt
2020-06-30T18:38:13,837   writing requirements to RagTag.egg-info/requires.txt
2020-06-30T18:38:13,839   writing top-level names to RagTag.egg-info/top_level.txt
2020-06-30T18:38:13,848   reading manifest file 'RagTag.egg-info/SOURCES.txt'
2020-06-30T18:38:13,857   writing manifest file 'RagTag.egg-info/SOURCES.txt'
2020-06-30T18:38:13,860   Copying RagTag.egg-info to build/bdist.linux-armv7l/wheel/RagTag-1.0.0-py3.7.egg-info
2020-06-30T18:38:13,888   running install_scripts
2020-06-30T18:38:13,995   creating build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data
2020-06-30T18:38:13,996   creating build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:13,998   copying build/scripts-3.7/ragtag_update_gff.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,004   copying build/scripts-3.7/ragtag_delta2paf.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,009   copying build/scripts-3.7/ragtag_stats.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,014   copying build/scripts-3.7/ragtag_correct.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,023   copying build/scripts-3.7/ragtag_break_query.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,030   copying build/scripts-3.7/ragtag_agp2fasta.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,036   copying build/scripts-3.7/ragtag_scaffold.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,043   copying build/scripts-3.7/setup.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,048   copying build/scripts-3.7/ragtag.py -> build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts
2020-06-30T18:38:14,053   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_update_gff.py to 755
2020-06-30T18:38:14,054   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_delta2paf.py to 755
2020-06-30T18:38:14,056   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_stats.py to 755
2020-06-30T18:38:14,058   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_correct.py to 755
2020-06-30T18:38:14,060   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_break_query.py to 755
2020-06-30T18:38:14,061   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_agp2fasta.py to 755
2020-06-30T18:38:14,063   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag_scaffold.py to 755
2020-06-30T18:38:14,065   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/setup.py to 755
2020-06-30T18:38:14,067   changing mode of build/bdist.linux-armv7l/wheel/RagTag-1.0.0.data/scripts/ragtag.py to 755
2020-06-30T18:38:14,120   creating build/bdist.linux-armv7l/wheel/RagTag-1.0.0.dist-info/WHEEL
2020-06-30T18:38:14,125   creating '/tmp/pip-wheel-y4gwyy9t/RagTag-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-06-30T18:38:14,131   adding 'RagTag-1.0.0.data/scripts/ragtag.py'
2020-06-30T18:38:14,133   adding 'RagTag-1.0.0.data/scripts/ragtag_agp2fasta.py'
2020-06-30T18:38:14,136   adding 'RagTag-1.0.0.data/scripts/ragtag_break_query.py'
2020-06-30T18:38:14,142   adding 'RagTag-1.0.0.data/scripts/ragtag_correct.py'
2020-06-30T18:38:14,146   adding 'RagTag-1.0.0.data/scripts/ragtag_delta2paf.py'
2020-06-30T18:38:14,151   adding 'RagTag-1.0.0.data/scripts/ragtag_scaffold.py'
2020-06-30T18:38:14,154   adding 'RagTag-1.0.0.data/scripts/ragtag_stats.py'
2020-06-30T18:38:14,157   adding 'RagTag-1.0.0.data/scripts/ragtag_update_gff.py'
2020-06-30T18:38:14,160   adding 'RagTag-1.0.0.data/scripts/setup.py'
2020-06-30T18:38:14,168   adding 'ragtag_utilities/AGPFile.py'
2020-06-30T18:38:14,171   adding 'ragtag_utilities/Aligner.py'
2020-06-30T18:38:14,174   adding 'ragtag_utilities/AlignmentReader.py'
2020-06-30T18:38:14,179   adding 'ragtag_utilities/ContigAlignment.py'
2020-06-30T18:38:14,181   adding 'ragtag_utilities/__init__.py'
2020-06-30T18:38:14,185   adding 'ragtag_utilities/utilities.py'
2020-06-30T18:38:14,187   adding 'RagTag-1.0.0.dist-info/METADATA'
2020-06-30T18:38:14,189   adding 'RagTag-1.0.0.dist-info/WHEEL'
2020-06-30T18:38:14,191   adding 'RagTag-1.0.0.dist-info/top_level.txt'
2020-06-30T18:38:14,193   adding 'RagTag-1.0.0.dist-info/zip-safe'
2020-06-30T18:38:14,194   adding 'RagTag-1.0.0.dist-info/RECORD'
2020-06-30T18:38:14,200   removing build/bdist.linux-armv7l/wheel
2020-06-30T18:38:14,347   Building wheel for RagTag (setup.py): finished with status 'done'
2020-06-30T18:38:14,351   Created wheel for RagTag: filename=RagTag-1.0.0-py3-none-any.whl size=43092 sha256=5aa6a76fad14074df8b25be95ef8b4521878b363d8c1f507cb5ffab8c4e32eda
2020-06-30T18:38:14,352   Stored in directory: /tmp/pip-ephem-wheel-cache-voel1ni6/wheels/59/86/a0/ed50a0bfc00ba28949e457694cd2b250b9d633c013ef8bce43
2020-06-30T18:38:14,355 Successfully built RagTag
2020-06-30T18:38:14,369 Removed build tracker: '/tmp/pip-req-tracker-ay7g0cu7'