2020-07-01T00:02:47,408 Created temporary directory: /tmp/pip-ephem-wheel-cache-ufahnsio
2020-07-01T00:02:47,412 Created temporary directory: /tmp/pip-req-tracker-9fbdoir7
2020-07-01T00:02:47,413 Initialized build tracking at /tmp/pip-req-tracker-9fbdoir7
2020-07-01T00:02:47,413 Created build tracker: /tmp/pip-req-tracker-9fbdoir7
2020-07-01T00:02:47,414 Entered build tracker: /tmp/pip-req-tracker-9fbdoir7
2020-07-01T00:02:47,415 Created temporary directory: /tmp/pip-wheel-ymre2q7t
2020-07-01T00:02:47,429 1 location(s) to search for versions of dms-variants:
2020-07-01T00:02:47,429 * https://pypi.org/simple/dms-variants/
2020-07-01T00:02:47,430 Fetching project page and analyzing links: https://pypi.org/simple/dms-variants/
2020-07-01T00:02:47,431 Getting page https://pypi.org/simple/dms-variants/
2020-07-01T00:02:47,433 Found index url https://pypi.org/simple
2020-07-01T00:02:47,646   Found link https://files.pythonhosted.org/packages/ae/3f/55cb4c15b42820532cac821318f50f3ad17ade82f880d71812bcae8967c7/dms_variants-0.1.0.tar.gz#sha256=240e9258b4185a36e0b8058661d4f482960b23f76bffa69ecb47046c8316d91f (from https://pypi.org/simple/dms-variants/), version: 0.1.0
2020-07-01T00:02:47,647   Found link https://files.pythonhosted.org/packages/a1/df/f59669180f011684499c37ecc8cb267773f1b30959912929e2bece714a2b/dms_variants-0.2.0.tar.gz#sha256=23bba8fe9475fe9ffcbac1de26ebfc18b2d801c0202d463f3cb187afcaaf8667 (from https://pypi.org/simple/dms-variants/), version: 0.2.0
2020-07-01T00:02:47,647   Found link https://files.pythonhosted.org/packages/5a/f8/776a37d070d5aed4b93ff2e010a82dc4b0d7f850968370ddd2d853cc2bde/dms_variants-0.3.0.tar.gz#sha256=a4ca60ab427417385f4ba1c29bfb3c12232f1b75ebfabd58021733f7584d2de5 (from https://pypi.org/simple/dms-variants/), version: 0.3.0
2020-07-01T00:02:47,648   Found link https://files.pythonhosted.org/packages/08/cb/ecaba6f45ed2b0a10c2c7c973bf7f7e6650e91706e2a9714003f39b70d9c/dms_variants-0.4.0.tar.gz#sha256=15fe61c48be235d99222ffd974ad3f0870c926c81185c4f6b9b3c77b6aae363f (from https://pypi.org/simple/dms-variants/), version: 0.4.0
2020-07-01T00:02:47,649   Found link https://files.pythonhosted.org/packages/cb/c1/ee28982822869d3858cf904c46cae6f6abf9a49004a1d402c7c49e75c931/dms_variants-0.4.1.tar.gz#sha256=49e1715dd9f8c2f6f4c991ff47ad57b310a0018d717b9968f9fe63927b5d977f (from https://pypi.org/simple/dms-variants/), version: 0.4.1
2020-07-01T00:02:47,649   Found link https://files.pythonhosted.org/packages/ab/1f/5f97b19ea51460f1e313a0e583397f2885b2c78227d25217e97f40cf9cd6/dms_variants-0.4.2.tar.gz#sha256=0b6c10a4211d2c7457d38e05b49f883b757e25da1834f8a979fbe823b859f0fb (from https://pypi.org/simple/dms-variants/), version: 0.4.2
2020-07-01T00:02:47,650   Found link https://files.pythonhosted.org/packages/18/5c/5c03b9809e9e3642993b12c623f494d1e9850a37d66ec4265dc5cf34cd4e/dms_variants-0.4.3.tar.gz#sha256=475af7344dd422b1e4d26b8feb99c7f408021b28f1e4a9cec0b8f3be00ae4260 (from https://pypi.org/simple/dms-variants/), version: 0.4.3
2020-07-01T00:02:47,651   Found link https://files.pythonhosted.org/packages/a4/47/f6ca84c217c56945969a0ac705049e353f15112d499cc19dda78d3df1303/dms_variants-0.4.4.tar.gz#sha256=1340251c9b7771f533f6aa87062d7f497196b7f3d5131ed10403a0e400d6199a (from https://pypi.org/simple/dms-variants/), version: 0.4.4
2020-07-01T00:02:47,651   Found link https://files.pythonhosted.org/packages/00/0e/0a93d88f0d7bdf44468684379a1a08157e9975c9d22196779654f71476b8/dms_variants-0.4.5.tar.gz#sha256=a4d057b48c966078f12ee1ac1a9fabbcd037854163dbe158581a8c267d2c19b0 (from https://pypi.org/simple/dms-variants/), version: 0.4.5
2020-07-01T00:02:47,652   Found link https://files.pythonhosted.org/packages/70/c5/2e269ddbe3e1c97cff9f57359c64c611f60e2e5410c34f3d3d386055c965/dms_variants-0.4.6.tar.gz#sha256=8ccfdfe657434642d5a8e44cff81540ed935397f200af3c68fe7e2824067311c (from https://pypi.org/simple/dms-variants/), version: 0.4.6
2020-07-01T00:02:47,653   Found link https://files.pythonhosted.org/packages/8a/f6/cfbf9b91a015af228a967735f0f344c1e5c3c0cd0d1a352ac527c491480c/dms_variants-0.4.7.tar.gz#sha256=2ace07ad2cf1eb6d7dad4ae436bf5d7ddf85f5aab86dd89ba530ef9dab0a1b7f (from https://pypi.org/simple/dms-variants/), version: 0.4.7
2020-07-01T00:02:47,653   Found link https://files.pythonhosted.org/packages/d4/be/a370cf848dbeca2424e92fb7dfb8aa1020bb3ed915ba41d8945f7fdac442/dms_variants-0.5.0.tar.gz#sha256=deafb649aee3962932c5eca981f0e524d4b3712e912ba5d87626f14b0164efd0 (from https://pypi.org/simple/dms-variants/), version: 0.5.0
2020-07-01T00:02:47,654   Found link https://files.pythonhosted.org/packages/c0/87/803c8c10bffd7266a9aad3aa29aacd7e5afcd78200be1ef84f420eaa9738/dms_variants-0.5.1.tar.gz#sha256=653c3dfcad844fc77c19273f0c4211ce5e46775ba7ce4acd72a1d6ee9829f18c (from https://pypi.org/simple/dms-variants/), version: 0.5.1
2020-07-01T00:02:47,655   Found link https://files.pythonhosted.org/packages/4f/83/8a7251d6d2c4a2666f059e5808c6ea19f82a4468dbf8e1f6a693ed59fca4/dms_variants-0.5.2.tar.gz#sha256=33bbfb5f22122fffe721b3ec091c13510d8345fe5a685d450103689706dfcb10 (from https://pypi.org/simple/dms-variants/), version: 0.5.2
2020-07-01T00:02:47,655   Found link https://files.pythonhosted.org/packages/7b/63/824460ca401ee784f4a0f64e7fcf31866561fd2c797f096e1b5b34d0e5d2/dms_variants-0.5.3.tar.gz#sha256=76bf6d592af6c070ef8503eeeb5d93761bf66a1644c722d1b2a4a485c4e33a7f (from https://pypi.org/simple/dms-variants/), version: 0.5.3
2020-07-01T00:02:47,656   Found link https://files.pythonhosted.org/packages/fe/ea/b496ccbfb75b559050c46b6c95a0edccbeac37123effc4218a8e99a26518/dms_variants-0.6.0.tar.gz#sha256=f42d47bbcf856f4a8265858bd18f2c026fa4408c194c1b60e97d93dd8371a2a6 (from https://pypi.org/simple/dms-variants/), version: 0.6.0
2020-07-01T00:02:47,656   Found link https://files.pythonhosted.org/packages/e0/0b/be1c27b17d06a9371673c687ac832f38fc3e755e0703d666699aa6de2f64/dms_variants-0.7.0.tar.gz#sha256=c899987c127503ab82608d4b8fc904ecff1b7a1e0e312a7171194e007e3d5159 (from https://pypi.org/simple/dms-variants/), version: 0.7.0
2020-07-01T00:02:47,657   Found link https://files.pythonhosted.org/packages/cf/77/170505df3e3b77422cb67de831c259233271e0e72ffed7232587ef1caf7c/dms_variants-0.7.1.tar.gz#sha256=8aaf0c91eca8f491b60b6f94835b1c05fb971b8ed927bf4e5a9c672dcff7861d (from https://pypi.org/simple/dms-variants/), version: 0.7.1
2020-07-01T00:02:47,675 Given no hashes to check 1 links for project 'dms-variants': discarding no candidates
2020-07-01T00:02:47,676 Using version 0.7.1 (newest of versions: 0.7.1)
2020-07-01T00:02:47,682 Collecting dms-variants==0.7.1
2020-07-01T00:02:47,685   Created temporary directory: /tmp/pip-unpack-su3hhpan
2020-07-01T00:02:47,765   Downloading dms_variants-0.7.1.tar.gz (5.5 MB)
2020-07-01T00:02:50,974   Added dms-variants==0.7.1 from https://files.pythonhosted.org/packages/cf/77/170505df3e3b77422cb67de831c259233271e0e72ffed7232587ef1caf7c/dms_variants-0.7.1.tar.gz#sha256=8aaf0c91eca8f491b60b6f94835b1c05fb971b8ed927bf4e5a9c672dcff7861d to build tracker '/tmp/pip-req-tracker-9fbdoir7'
2020-07-01T00:02:50,976     Running setup.py (path:/tmp/pip-wheel-ymre2q7t/dms-variants/setup.py) egg_info for package dms-variants
2020-07-01T00:02:50,978     Created temporary directory: /tmp/pip-pip-egg-info-bpro_vbk
2020-07-01T00:02:50,978     Running command python setup.py egg_info
2020-07-01T00:02:52,687     running egg_info
2020-07-01T00:02:52,693     creating /tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info
2020-07-01T00:02:52,695     writing /tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/PKG-INFO
2020-07-01T00:02:52,699     writing dependency_links to /tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/dependency_links.txt
2020-07-01T00:02:52,704     writing requirements to /tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/requires.txt
2020-07-01T00:02:52,706     writing top-level names to /tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/top_level.txt
2020-07-01T00:02:52,710     writing manifest file '/tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/SOURCES.txt'
2020-07-01T00:02:53,352     reading manifest file '/tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/SOURCES.txt'
2020-07-01T00:02:53,359     writing manifest file '/tmp/pip-pip-egg-info-bpro_vbk/dms_variants.egg-info/SOURCES.txt'
2020-07-01T00:02:53,497   Source in /tmp/pip-wheel-ymre2q7t/dms-variants has version 0.7.1, which satisfies requirement dms-variants==0.7.1 from https://files.pythonhosted.org/packages/cf/77/170505df3e3b77422cb67de831c259233271e0e72ffed7232587ef1caf7c/dms_variants-0.7.1.tar.gz#sha256=8aaf0c91eca8f491b60b6f94835b1c05fb971b8ed927bf4e5a9c672dcff7861d
2020-07-01T00:02:53,499   Removed dms-variants==0.7.1 from https://files.pythonhosted.org/packages/cf/77/170505df3e3b77422cb67de831c259233271e0e72ffed7232587ef1caf7c/dms_variants-0.7.1.tar.gz#sha256=8aaf0c91eca8f491b60b6f94835b1c05fb971b8ed927bf4e5a9c672dcff7861d from build tracker '/tmp/pip-req-tracker-9fbdoir7'
2020-07-01T00:02:53,502 Building wheels for collected packages: dms-variants
2020-07-01T00:02:53,511   Created temporary directory: /tmp/pip-wheel-5uzzc4xi
2020-07-01T00:02:53,512   Building wheel for dms-variants (setup.py): started
2020-07-01T00:02:53,513   Destination directory: /tmp/pip-wheel-5uzzc4xi
2020-07-01T00:02:53,513   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ymre2q7t/dms-variants/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ymre2q7t/dms-variants/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5uzzc4xi
2020-07-01T00:02:55,258   running bdist_wheel
2020-07-01T00:02:55,270   running build
2020-07-01T00:02:55,270   running build_py
2020-07-01T00:02:55,544   creating build
2020-07-01T00:02:55,545   creating build/lib.linux-armv7l-3.7
2020-07-01T00:02:55,546   creating build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,549   copying dms_variants/illuminabarcodeparser.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,555   copying dms_variants/fastq.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,560   copying dms_variants/__init__.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,564   copying dms_variants/utils.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,572   copying dms_variants/globalepistasis.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,588   copying dms_variants/bottlenecks.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,593   copying dms_variants/constants.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,597   copying dms_variants/barcodes.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,601   copying dms_variants/simulate.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,609   copying dms_variants/codonvarianttable.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,628   copying dms_variants/ispline.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,637   copying dms_variants/binarymap.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,645   copying dms_variants/plotnine_themes.py -> build/lib.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:55,653   running build_ext
2020-07-01T00:02:56,002   building 'dms_variants._cutils' extension
2020-07-01T00:02:56,003   creating build/temp.linux-armv7l-3.7
2020-07-01T00:02:56,004   creating build/temp.linux-armv7l-3.7/dms_variants
2020-07-01T00:02:56,006   arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c dms_variants/_cutils.c -o build/temp.linux-armv7l-3.7/dms_variants/_cutils.o -Wno-error=declaration-after-statement
2020-07-01T00:02:56,802   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/dms_variants/_cutils.o -o build/lib.linux-armv7l-3.7/dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so
2020-07-01T00:02:57,004   installing to build/bdist.linux-armv7l/wheel
2020-07-01T00:02:57,005   running install
2020-07-01T00:02:57,008   running install_lib
2020-07-01T00:02:57,016   creating build/bdist.linux-armv7l
2020-07-01T00:02:57,017   creating build/bdist.linux-armv7l/wheel
2020-07-01T00:02:57,021   creating build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,023   copying build/lib.linux-armv7l-3.7/dms_variants/illuminabarcodeparser.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,030   copying build/lib.linux-armv7l-3.7/dms_variants/fastq.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,037   copying build/lib.linux-armv7l-3.7/dms_variants/__init__.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,042   copying build/lib.linux-armv7l-3.7/dms_variants/utils.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,051   copying build/lib.linux-armv7l-3.7/dms_variants/globalepistasis.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,068   copying build/lib.linux-armv7l-3.7/dms_variants/bottlenecks.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,073   copying build/lib.linux-armv7l-3.7/dms_variants/constants.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,079   copying build/lib.linux-armv7l-3.7/dms_variants/barcodes.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,086   copying build/lib.linux-armv7l-3.7/dms_variants/simulate.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,095   copying build/lib.linux-armv7l-3.7/dms_variants/codonvarianttable.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,113   copying build/lib.linux-armv7l-3.7/dms_variants/ispline.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,122   copying build/lib.linux-armv7l-3.7/dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,129   copying build/lib.linux-armv7l-3.7/dms_variants/binarymap.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,136   copying build/lib.linux-armv7l-3.7/dms_variants/plotnine_themes.py -> build/bdist.linux-armv7l/wheel/dms_variants
2020-07-01T00:02:57,141   running install_egg_info
2020-07-01T00:02:57,182   running egg_info
2020-07-01T00:02:57,183   writing dms_variants.egg-info/PKG-INFO
2020-07-01T00:02:57,187   writing dependency_links to dms_variants.egg-info/dependency_links.txt
2020-07-01T00:02:57,191   writing requirements to dms_variants.egg-info/requires.txt
2020-07-01T00:02:57,193   writing top-level names to dms_variants.egg-info/top_level.txt
2020-07-01T00:02:57,203   reading manifest file 'dms_variants.egg-info/SOURCES.txt'
2020-07-01T00:02:57,248   writing manifest file 'dms_variants.egg-info/SOURCES.txt'
2020-07-01T00:02:57,252   Copying dms_variants.egg-info to build/bdist.linux-armv7l/wheel/dms_variants-0.7.1-py3.7.egg-info
2020-07-01T00:02:57,278   running install_scripts
2020-07-01T00:02:57,420   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2020-07-01T00:02:57,438   creating build/bdist.linux-armv7l/wheel/dms_variants-0.7.1.dist-info/WHEEL
2020-07-01T00:02:57,443   creating '/tmp/pip-wheel-5uzzc4xi/dms_variants-0.7.1-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-07-01T00:02:57,448   adding 'dms_variants/__init__.py'
2020-07-01T00:02:57,457   adding 'dms_variants/_cutils.cpython-37m-arm-linux-gnueabihf.so'
2020-07-01T00:02:57,460   adding 'dms_variants/barcodes.py'
2020-07-01T00:02:57,465   adding 'dms_variants/binarymap.py'
2020-07-01T00:02:57,469   adding 'dms_variants/bottlenecks.py'
2020-07-01T00:02:57,489   adding 'dms_variants/codonvarianttable.py'
2020-07-01T00:02:57,493   adding 'dms_variants/constants.py'
2020-07-01T00:02:57,497   adding 'dms_variants/fastq.py'
2020-07-01T00:02:57,517   adding 'dms_variants/globalepistasis.py'
2020-07-01T00:02:57,522   adding 'dms_variants/illuminabarcodeparser.py'
2020-07-01T00:02:57,529   adding 'dms_variants/ispline.py'
2020-07-01T00:02:57,532   adding 'dms_variants/plotnine_themes.py'
2020-07-01T00:02:57,539   adding 'dms_variants/simulate.py'
2020-07-01T00:02:57,545   adding 'dms_variants/utils.py'
2020-07-01T00:02:57,549   adding 'dms_variants-0.7.1.dist-info/LICENSE.txt'
2020-07-01T00:02:57,552   adding 'dms_variants-0.7.1.dist-info/METADATA'
2020-07-01T00:02:57,554   adding 'dms_variants-0.7.1.dist-info/WHEEL'
2020-07-01T00:02:57,556   adding 'dms_variants-0.7.1.dist-info/top_level.txt'
2020-07-01T00:02:57,557   adding 'dms_variants-0.7.1.dist-info/RECORD'
2020-07-01T00:02:57,568   removing build/bdist.linux-armv7l/wheel
2020-07-01T00:02:57,732   Building wheel for dms-variants (setup.py): finished with status 'done'
2020-07-01T00:02:57,738   Created wheel for dms-variants: filename=dms_variants-0.7.1-cp37-cp37m-linux_armv7l.whl size=106200 sha256=2fedf9e745985239746712f66530e09d602d69d9b7155b436477e54885f5db3e
2020-07-01T00:02:57,739   Stored in directory: /tmp/pip-ephem-wheel-cache-ufahnsio/wheels/c9/ec/16/3d117b1090a1136712bea25be326da01159f36263c6f853f28
2020-07-01T00:02:57,742 Successfully built dms-variants
2020-07-01T00:02:57,766 Removed build tracker: '/tmp/pip-req-tracker-9fbdoir7'