2020-07-03T17:53:39,044 Created temporary directory: /tmp/pip-ephem-wheel-cache-8u179fes 2020-07-03T17:53:39,049 Created temporary directory: /tmp/pip-req-tracker-0p9pe9b3 2020-07-03T17:53:39,049 Initialized build tracking at /tmp/pip-req-tracker-0p9pe9b3 2020-07-03T17:53:39,050 Created build tracker: /tmp/pip-req-tracker-0p9pe9b3 2020-07-03T17:53:39,050 Entered build tracker: /tmp/pip-req-tracker-0p9pe9b3 2020-07-03T17:53:39,052 Created temporary directory: /tmp/pip-wheel-w1qhff2o 2020-07-03T17:53:39,068 1 location(s) to search for versions of pdb2pqr: 2020-07-03T17:53:39,068 * https://pypi.org/simple/pdb2pqr/ 2020-07-03T17:53:39,069 Fetching project page and analyzing links: https://pypi.org/simple/pdb2pqr/ 2020-07-03T17:53:39,070 Getting page https://pypi.org/simple/pdb2pqr/ 2020-07-03T17:53:39,072 Found index url https://pypi.org/simple 2020-07-03T17:53:39,271 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/57/04/bb33da3ec20e6dcd370269adf26227bb89f603fc7049c90e817e6483d5d6/pdb2pqr-3.0.0-py3-none-any.whl#sha256=86fc234135d79795d6c32222eb5d98e3aee27f2055d2965be59500524ef3c2e2 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2020-07-03T17:53:39,272 Found link https://files.pythonhosted.org/packages/31/a3/fadf0c0afc577bbdcfdf145b47d2954e7594c83e1c3e150f510bf4757166/pdb2pqr-3.0.0.tar.gz#sha256=6a75fb23c517ec07dc52c8cf95f9cf3d3578de98dddc21c275c61be21c5cf3e9 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.0 2020-07-03T17:53:39,273 Skipping link: No binaries permitted for pdb2pqr: https://files.pythonhosted.org/packages/28/f5/b122ef1691714e4c625862ed3c85aa859c4c242c3611aa99c0a271f403cb/pdb2pqr-3.0.1-py3-none-any.whl#sha256=49798d226cf30286044519e45c57753d21f370aed2e0f9af3f27f402580a5368 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5) 2020-07-03T17:53:39,273 Found link https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz#sha256=15ac0ce77dc17fb459092aca12cc7c2c070904f77914f1197282e28f418b6bd0 (from https://pypi.org/simple/pdb2pqr/) (requires-python:>=3.5), version: 3.0.1 2020-07-03T17:53:39,281 Given no hashes to check 1 links for project 'pdb2pqr': discarding no candidates 2020-07-03T17:53:39,282 Using version 3.0.1 (newest of versions: 3.0.1) 2020-07-03T17:53:39,287 Collecting pdb2pqr==3.0.1 2020-07-03T17:53:39,291 Created temporary directory: /tmp/pip-unpack-268l_p8d 2020-07-03T17:53:39,546 Downloading pdb2pqr-3.0.1.tar.gz (197 kB) 2020-07-03T17:53:40,159 Added pdb2pqr==3.0.1 from https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz#sha256=15ac0ce77dc17fb459092aca12cc7c2c070904f77914f1197282e28f418b6bd0 to build tracker '/tmp/pip-req-tracker-0p9pe9b3' 2020-07-03T17:53:40,162 Running setup.py (path:/tmp/pip-wheel-w1qhff2o/pdb2pqr/setup.py) egg_info for package pdb2pqr 2020-07-03T17:53:40,164 Created temporary directory: /tmp/pip-pip-egg-info-ppn_nye2 2020-07-03T17:53:40,165 Running command python setup.py egg_info 2020-07-03T17:53:41,927 running egg_info 2020-07-03T17:53:41,931 creating /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info 2020-07-03T17:53:41,932 writing /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/PKG-INFO 2020-07-03T17:53:41,937 writing dependency_links to /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/dependency_links.txt 2020-07-03T17:53:41,940 writing entry points to /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/entry_points.txt 2020-07-03T17:53:41,943 writing requirements to /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/requires.txt 2020-07-03T17:53:41,945 writing top-level names to /tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/top_level.txt 2020-07-03T17:53:41,949 writing manifest file '/tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/SOURCES.txt' 2020-07-03T17:53:42,262 reading manifest file '/tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/SOURCES.txt' 2020-07-03T17:53:42,272 writing manifest file '/tmp/pip-pip-egg-info-ppn_nye2/pdb2pqr.egg-info/SOURCES.txt' 2020-07-03T17:53:42,391 Source in /tmp/pip-wheel-w1qhff2o/pdb2pqr has version 3.0.1, which satisfies requirement pdb2pqr==3.0.1 from https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz#sha256=15ac0ce77dc17fb459092aca12cc7c2c070904f77914f1197282e28f418b6bd0 2020-07-03T17:53:42,393 Removed pdb2pqr==3.0.1 from https://files.pythonhosted.org/packages/03/1b/601c04590dcc7b466b8f7f49241b26907c82c3864184ce805b4e2736f814/pdb2pqr-3.0.1.tar.gz#sha256=15ac0ce77dc17fb459092aca12cc7c2c070904f77914f1197282e28f418b6bd0 from build tracker '/tmp/pip-req-tracker-0p9pe9b3' 2020-07-03T17:53:42,397 Building wheels for collected packages: pdb2pqr 2020-07-03T17:53:42,406 Created temporary directory: /tmp/pip-wheel-j2f07px_ 2020-07-03T17:53:42,407 Building wheel for pdb2pqr (setup.py): started 2020-07-03T17:53:42,407 Destination directory: /tmp/pip-wheel-j2f07px_ 2020-07-03T17:53:42,408 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w1qhff2o/pdb2pqr/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w1qhff2o/pdb2pqr/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-j2f07px_ 2020-07-03T17:53:44,143 running bdist_wheel 2020-07-03T17:53:44,156 running build 2020-07-03T17:53:44,156 running build_py 2020-07-03T17:53:44,431 creating build 2020-07-03T17:53:44,432 creating build/lib 2020-07-03T17:53:44,433 creating build/lib/pdb2pqr 2020-07-03T17:53:44,436 copying pdb2pqr/__init__.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,440 copying pdb2pqr/na.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,445 copying pdb2pqr/structures.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,450 copying pdb2pqr/cif.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,458 copying pdb2pqr/utilities.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,464 copying pdb2pqr/debump.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,471 copying pdb2pqr/topology.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,478 copying pdb2pqr/input_output.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,485 copying pdb2pqr/__main__.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,490 copying pdb2pqr/residue.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,496 copying pdb2pqr/inputgen.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,501 copying pdb2pqr/psize.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,507 copying pdb2pqr/main.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,513 copying pdb2pqr/run.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,519 copying pdb2pqr/quatfit.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,526 copying pdb2pqr/pdb.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,539 copying pdb2pqr/definitions.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,545 copying pdb2pqr/protein.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,555 copying pdb2pqr/aa.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,563 copying pdb2pqr/config.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,568 copying pdb2pqr/cells.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,573 copying pdb2pqr/forcefield.py -> build/lib/pdb2pqr 2020-07-03T17:53:44,583 creating build/lib/pdb2pqr/ligand 2020-07-03T17:53:44,584 copying pdb2pqr/ligand/__init__.py -> build/lib/pdb2pqr/ligand 2020-07-03T17:53:44,589 copying pdb2pqr/ligand/mol2.py -> build/lib/pdb2pqr/ligand 2020-07-03T17:53:44,595 copying pdb2pqr/ligand/peoe.py -> build/lib/pdb2pqr/ligand 2020-07-03T17:53:44,601 copying pdb2pqr/ligand/topology.py -> build/lib/pdb2pqr/ligand 2020-07-03T17:53:44,607 creating build/lib/pdb2pqr/pdbx 2020-07-03T17:53:44,610 copying pdb2pqr/pdbx/__init__.py -> build/lib/pdb2pqr/pdbx 2020-07-03T17:53:44,617 creating build/lib/pdb2pqr/hydrogens 2020-07-03T17:53:44,619 copying pdb2pqr/hydrogens/__init__.py -> build/lib/pdb2pqr/hydrogens 2020-07-03T17:53:44,627 copying pdb2pqr/hydrogens/structures.py -> build/lib/pdb2pqr/hydrogens 2020-07-03T17:53:44,635 copying pdb2pqr/hydrogens/optimize.py -> build/lib/pdb2pqr/hydrogens 2020-07-03T17:53:44,646 creating build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,650 copying pdb2pqr/pdbx/reader/__init__.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,658 copying pdb2pqr/pdbx/reader/PdbxReaderTests.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,663 copying pdb2pqr/pdbx/reader/PdbxReadWriteTests.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,669 copying pdb2pqr/pdbx/reader/PdbxContainers.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,676 copying pdb2pqr/pdbx/reader/PdbxReader.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,683 copying pdb2pqr/pdbx/reader/PdbxParser.py -> build/lib/pdb2pqr/pdbx/reader 2020-07-03T17:53:44,691 creating build/lib/pdb2pqr/pdbx/writer 2020-07-03T17:53:44,693 copying pdb2pqr/pdbx/writer/__init__.py -> build/lib/pdb2pqr/pdbx/writer 2020-07-03T17:53:44,697 copying pdb2pqr/pdbx/writer/PdbxWriter.py -> build/lib/pdb2pqr/pdbx/writer 2020-07-03T17:53:44,703 copying pdb2pqr/pdbx/writer/PdbxWriterTests.py -> build/lib/pdb2pqr/pdbx/writer 2020-07-03T17:53:44,718 creating build/lib/pdb2pqr/dat 2020-07-03T17:53:44,720 copying pdb2pqr/dat/HYDROGENS.xml -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,726 copying pdb2pqr/dat/AA.xml -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,737 copying pdb2pqr/dat/PATCHES.xml -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,744 copying pdb2pqr/dat/TOPOLOGY.xml -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,755 copying pdb2pqr/dat/NA.xml -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,764 copying pdb2pqr/dat/CHARMM.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,777 copying pdb2pqr/dat/PARSE.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,786 copying pdb2pqr/dat/PEOEPB.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,796 copying pdb2pqr/dat/TYL06.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,812 copying pdb2pqr/dat/SWANSON.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,823 copying pdb2pqr/dat/AMBER.DAT -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,836 copying pdb2pqr/dat/PARSE.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,843 copying pdb2pqr/dat/AMBER.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,848 copying pdb2pqr/dat/TYL06.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,853 copying pdb2pqr/dat/SWANSON.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,857 copying pdb2pqr/dat/CHARMM.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,863 copying pdb2pqr/dat/PEOEPB.names -> build/lib/pdb2pqr/dat 2020-07-03T17:53:44,890 installing to build/bdist.linux-armv7l/wheel 2020-07-03T17:53:44,890 running install 2020-07-03T17:53:44,892 running install_lib 2020-07-03T17:53:44,899 creating build/bdist.linux-armv7l 2020-07-03T17:53:44,900 creating build/bdist.linux-armv7l/wheel 2020-07-03T17:53:44,904 creating build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,908 creating build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2020-07-03T17:53:44,910 copying build/lib/pdb2pqr/ligand/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2020-07-03T17:53:44,915 copying build/lib/pdb2pqr/ligand/mol2.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2020-07-03T17:53:44,921 copying build/lib/pdb2pqr/ligand/peoe.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2020-07-03T17:53:44,927 copying build/lib/pdb2pqr/ligand/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/ligand 2020-07-03T17:53:44,932 copying build/lib/pdb2pqr/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,937 copying build/lib/pdb2pqr/na.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,943 copying build/lib/pdb2pqr/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,950 copying build/lib/pdb2pqr/cif.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,959 copying build/lib/pdb2pqr/utilities.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,966 copying build/lib/pdb2pqr/debump.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:44,975 creating build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:44,977 copying build/lib/pdb2pqr/dat/CHARMM.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:44,990 copying build/lib/pdb2pqr/dat/PARSE.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:44,999 copying build/lib/pdb2pqr/dat/PARSE.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,005 copying build/lib/pdb2pqr/dat/HYDROGENS.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,011 copying build/lib/pdb2pqr/dat/AA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,023 copying build/lib/pdb2pqr/dat/AMBER.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,028 copying build/lib/pdb2pqr/dat/PEOEPB.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,037 copying build/lib/pdb2pqr/dat/TYL06.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,042 copying build/lib/pdb2pqr/dat/SWANSON.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,048 copying build/lib/pdb2pqr/dat/TYL06.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,063 copying build/lib/pdb2pqr/dat/SWANSON.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,071 copying build/lib/pdb2pqr/dat/CHARMM.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,077 copying build/lib/pdb2pqr/dat/AMBER.DAT -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,087 copying build/lib/pdb2pqr/dat/PEOEPB.names -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,092 copying build/lib/pdb2pqr/dat/PATCHES.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,100 copying build/lib/pdb2pqr/dat/TOPOLOGY.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,112 copying build/lib/pdb2pqr/dat/NA.xml -> build/bdist.linux-armv7l/wheel/pdb2pqr/dat 2020-07-03T17:53:45,121 copying build/lib/pdb2pqr/topology.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,128 copying build/lib/pdb2pqr/input_output.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,135 copying build/lib/pdb2pqr/__main__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,142 creating build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx 2020-07-03T17:53:45,144 copying build/lib/pdb2pqr/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx 2020-07-03T17:53:45,151 creating build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,154 copying build/lib/pdb2pqr/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,159 copying build/lib/pdb2pqr/pdbx/reader/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,165 copying build/lib/pdb2pqr/pdbx/reader/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,171 copying build/lib/pdb2pqr/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,180 copying build/lib/pdb2pqr/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,188 copying build/lib/pdb2pqr/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/reader 2020-07-03T17:53:45,197 creating build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/writer 2020-07-03T17:53:45,199 copying build/lib/pdb2pqr/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/writer 2020-07-03T17:53:45,205 copying build/lib/pdb2pqr/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/writer 2020-07-03T17:53:45,211 copying build/lib/pdb2pqr/pdbx/writer/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/pdbx/writer 2020-07-03T17:53:45,217 copying build/lib/pdb2pqr/residue.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,224 copying build/lib/pdb2pqr/inputgen.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,231 copying build/lib/pdb2pqr/psize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,238 copying build/lib/pdb2pqr/main.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,247 copying build/lib/pdb2pqr/run.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,253 copying build/lib/pdb2pqr/quatfit.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,261 creating build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2020-07-03T17:53:45,264 copying build/lib/pdb2pqr/hydrogens/__init__.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2020-07-03T17:53:45,273 copying build/lib/pdb2pqr/hydrogens/structures.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2020-07-03T17:53:45,284 copying build/lib/pdb2pqr/hydrogens/optimize.py -> build/bdist.linux-armv7l/wheel/pdb2pqr/hydrogens 2020-07-03T17:53:45,291 copying build/lib/pdb2pqr/pdb.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,303 copying build/lib/pdb2pqr/definitions.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,308 copying build/lib/pdb2pqr/protein.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,317 copying build/lib/pdb2pqr/aa.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,325 copying build/lib/pdb2pqr/config.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,331 copying build/lib/pdb2pqr/cells.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,336 copying build/lib/pdb2pqr/forcefield.py -> build/bdist.linux-armv7l/wheel/pdb2pqr 2020-07-03T17:53:45,345 running install_egg_info 2020-07-03T17:53:45,384 running egg_info 2020-07-03T17:53:45,385 writing pdb2pqr.egg-info/PKG-INFO 2020-07-03T17:53:45,389 writing dependency_links to pdb2pqr.egg-info/dependency_links.txt 2020-07-03T17:53:45,392 writing entry points to pdb2pqr.egg-info/entry_points.txt 2020-07-03T17:53:45,394 writing requirements to pdb2pqr.egg-info/requires.txt 2020-07-03T17:53:45,397 writing top-level names to pdb2pqr.egg-info/top_level.txt 2020-07-03T17:53:45,414 reading manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2020-07-03T17:53:45,428 writing manifest file 'pdb2pqr.egg-info/SOURCES.txt' 2020-07-03T17:53:45,432 Copying pdb2pqr.egg-info to build/bdist.linux-armv7l/wheel/pdb2pqr-3.0.1-py3.7.egg-info 2020-07-03T17:53:45,460 running install_scripts 2020-07-03T17:53:45,617 creating build/bdist.linux-armv7l/wheel/pdb2pqr-3.0.1.dist-info/WHEEL 2020-07-03T17:53:45,623 creating '/tmp/pip-wheel-j2f07px_/pdb2pqr-3.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-07-03T17:53:45,628 adding 'pdb2pqr/__init__.py' 2020-07-03T17:53:45,630 adding 'pdb2pqr/__main__.py' 2020-07-03T17:53:45,635 adding 'pdb2pqr/aa.py' 2020-07-03T17:53:45,638 adding 'pdb2pqr/cells.py' 2020-07-03T17:53:45,644 adding 'pdb2pqr/cif.py' 2020-07-03T17:53:45,647 adding 'pdb2pqr/config.py' 2020-07-03T17:53:45,651 adding 'pdb2pqr/debump.py' 2020-07-03T17:53:45,655 adding 'pdb2pqr/definitions.py' 2020-07-03T17:53:45,661 adding 'pdb2pqr/forcefield.py' 2020-07-03T17:53:45,665 adding 'pdb2pqr/input_output.py' 2020-07-03T17:53:45,669 adding 'pdb2pqr/inputgen.py' 2020-07-03T17:53:45,675 adding 'pdb2pqr/main.py' 2020-07-03T17:53:45,678 adding 'pdb2pqr/na.py' 2020-07-03T17:53:45,691 adding 'pdb2pqr/pdb.py' 2020-07-03T17:53:45,700 adding 'pdb2pqr/protein.py' 2020-07-03T17:53:45,704 adding 'pdb2pqr/psize.py' 2020-07-03T17:53:45,708 adding 'pdb2pqr/quatfit.py' 2020-07-03T17:53:45,712 adding 'pdb2pqr/residue.py' 2020-07-03T17:53:45,715 adding 'pdb2pqr/run.py' 2020-07-03T17:53:45,718 adding 'pdb2pqr/structures.py' 2020-07-03T17:53:45,722 adding 'pdb2pqr/topology.py' 2020-07-03T17:53:45,725 adding 'pdb2pqr/utilities.py' 2020-07-03T17:53:45,733 adding 'pdb2pqr/dat/AA.xml' 2020-07-03T17:53:45,746 adding 'pdb2pqr/dat/AMBER.DAT' 2020-07-03T17:53:45,749 adding 'pdb2pqr/dat/AMBER.names' 2020-07-03T17:53:45,762 adding 'pdb2pqr/dat/CHARMM.DAT' 2020-07-03T17:53:45,765 adding 'pdb2pqr/dat/CHARMM.names' 2020-07-03T17:53:45,768 adding 'pdb2pqr/dat/HYDROGENS.xml' 2020-07-03T17:53:45,773 adding 'pdb2pqr/dat/NA.xml' 2020-07-03T17:53:45,778 adding 'pdb2pqr/dat/PARSE.DAT' 2020-07-03T17:53:45,781 adding 'pdb2pqr/dat/PARSE.names' 2020-07-03T17:53:45,785 adding 'pdb2pqr/dat/PATCHES.xml' 2020-07-03T17:53:45,794 adding 'pdb2pqr/dat/PEOEPB.DAT' 2020-07-03T17:53:45,796 adding 'pdb2pqr/dat/PEOEPB.names' 2020-07-03T17:53:45,805 adding 'pdb2pqr/dat/SWANSON.DAT' 2020-07-03T17:53:45,808 adding 'pdb2pqr/dat/SWANSON.names' 2020-07-03T17:53:45,816 adding 'pdb2pqr/dat/TOPOLOGY.xml' 2020-07-03T17:53:45,832 adding 'pdb2pqr/dat/TYL06.DAT' 2020-07-03T17:53:45,836 adding 'pdb2pqr/dat/TYL06.names' 2020-07-03T17:53:45,843 adding 'pdb2pqr/hydrogens/__init__.py' 2020-07-03T17:53:45,848 adding 'pdb2pqr/hydrogens/optimize.py' 2020-07-03T17:53:45,857 adding 'pdb2pqr/hydrogens/structures.py' 2020-07-03T17:53:45,862 adding 'pdb2pqr/ligand/__init__.py' 2020-07-03T17:53:45,866 adding 'pdb2pqr/ligand/mol2.py' 2020-07-03T17:53:45,870 adding 'pdb2pqr/ligand/peoe.py' 2020-07-03T17:53:45,872 adding 'pdb2pqr/ligand/topology.py' 2020-07-03T17:53:45,875 adding 'pdb2pqr/pdbx/__init__.py' 2020-07-03T17:53:45,882 adding 'pdb2pqr/pdbx/reader/PdbxContainers.py' 2020-07-03T17:53:45,888 adding 'pdb2pqr/pdbx/reader/PdbxParser.py' 2020-07-03T17:53:45,891 adding 'pdb2pqr/pdbx/reader/PdbxReadWriteTests.py' 2020-07-03T17:53:45,895 adding 'pdb2pqr/pdbx/reader/PdbxReader.py' 2020-07-03T17:53:45,898 adding 'pdb2pqr/pdbx/reader/PdbxReaderTests.py' 2020-07-03T17:53:45,900 adding 'pdb2pqr/pdbx/reader/__init__.py' 2020-07-03T17:53:45,904 adding 'pdb2pqr/pdbx/writer/PdbxWriter.py' 2020-07-03T17:53:45,907 adding 'pdb2pqr/pdbx/writer/PdbxWriterTests.py' 2020-07-03T17:53:45,909 adding 'pdb2pqr/pdbx/writer/__init__.py' 2020-07-03T17:53:45,914 adding 'pdb2pqr-3.0.1.dist-info/METADATA' 2020-07-03T17:53:45,916 adding 'pdb2pqr-3.0.1.dist-info/WHEEL' 2020-07-03T17:53:45,918 adding 'pdb2pqr-3.0.1.dist-info/entry_points.txt' 2020-07-03T17:53:45,919 adding 'pdb2pqr-3.0.1.dist-info/top_level.txt' 2020-07-03T17:53:45,921 adding 'pdb2pqr-3.0.1.dist-info/RECORD' 2020-07-03T17:53:45,943 removing build/bdist.linux-armv7l/wheel 2020-07-03T17:53:46,127 Building wheel for pdb2pqr (setup.py): finished with status 'done' 2020-07-03T17:53:46,135 Created wheel for pdb2pqr: filename=pdb2pqr-3.0.1-py3-none-any.whl size=215696 sha256=e59b47a1ba797bb5d830ae52bfdf563c14aa0016c439e3e35cafa3aa22a3e260 2020-07-03T17:53:46,135 Stored in directory: /tmp/pip-ephem-wheel-cache-8u179fes/wheels/3f/e7/c8/fd920f4d471d52cfb50e934ab54d6823d52373c53127eb9784 2020-07-03T17:53:46,139 Successfully built pdb2pqr 2020-07-03T17:53:46,184 Removed build tracker: '/tmp/pip-req-tracker-0p9pe9b3'