2020-07-07T18:16:59,684 Created temporary directory: /tmp/pip-ephem-wheel-cache-53x435md
2020-07-07T18:16:59,688 Created temporary directory: /tmp/pip-req-tracker-y64eh0fn
2020-07-07T18:16:59,689 Initialized build tracking at /tmp/pip-req-tracker-y64eh0fn
2020-07-07T18:16:59,691 Created build tracker: /tmp/pip-req-tracker-y64eh0fn
2020-07-07T18:16:59,692 Entered build tracker: /tmp/pip-req-tracker-y64eh0fn
2020-07-07T18:16:59,693 Created temporary directory: /tmp/pip-wheel-cfhkjiiu
2020-07-07T18:16:59,712 1 location(s) to search for versions of faps:
2020-07-07T18:16:59,712 * https://pypi.org/simple/faps/
2020-07-07T18:16:59,713 Fetching project page and analyzing links: https://pypi.org/simple/faps/
2020-07-07T18:16:59,715 Getting page https://pypi.org/simple/faps/
2020-07-07T18:16:59,720 Found index url https://pypi.org/simple
2020-07-07T18:17:00,208   Found link https://files.pythonhosted.org/packages/e1/4e/b674e2ba31cac8029b974a3947b9f522cbff50ef441de9049abdee41c6f7/faps-1.1.0.tar.gz#sha256=bb40c6cd9529d7bbedd31858fe7cf7f690479fa685008e7a0567e7bf6048d8f5 (from https://pypi.org/simple/faps/), version: 1.1.0
2020-07-07T18:17:00,210   Found link https://files.pythonhosted.org/packages/9a/bb/c8b5e3ccbed219630989976f3a49b3ddb28a5b44f00b0b73c9e3108ee57f/faps-1.1.1.tar.gz#sha256=6dccb9f61093dca1fa6ead0b54f55a918186410123834c3c35ca5464c30c34c1 (from https://pypi.org/simple/faps/), version: 1.1.1
2020-07-07T18:17:00,211   Found link https://files.pythonhosted.org/packages/af/86/bd152f8a4386b664eb9d53c307c8f3c5ed03c0fcb425988c744e79bb3beb/faps-1.2.0.tar.gz#sha256=5f1e0e8531859c70cea24391f26230461b634de1b11d33422ce175840f2d9377 (from https://pypi.org/simple/faps/), version: 1.2.0
2020-07-07T18:17:00,213   Found link https://files.pythonhosted.org/packages/a3/45/66513f159998725a6934d455bcc0beb86f7f650372a86d7ced9e496ea916/faps-1.2.1.tar.gz#sha256=152cfbffec9301d922a4ac2e4ac3aae76cf8e1c0093ba2fff4211a9eaee9c94f (from https://pypi.org/simple/faps/), version: 1.2.1
2020-07-07T18:17:00,214   Found link https://files.pythonhosted.org/packages/cc/f6/b7bd85b4d74433eca7281fd3910fdd41ff10164d5c5723e9b2714c28b723/faps-1.2.3.tar.gz#sha256=5c0daefac441f12d3b3cb9bca5a868e409a8bdbe8f60230937e783f5f07874b1 (from https://pypi.org/simple/faps/), version: 1.2.3
2020-07-07T18:17:00,215   Found link https://files.pythonhosted.org/packages/5d/24/3b9746abfa526e45635cb0012f813e32bd914407d913473cf35631545428/faps-1.2.4.tar.gz#sha256=92e65046d96ea29872e7187b148ad8c116b581b41ff82c42acc52bc62e3f6053 (from https://pypi.org/simple/faps/), version: 1.2.4
2020-07-07T18:17:00,216   Found link https://files.pythonhosted.org/packages/d7/5c/c336e73f6861653bec8f80913b42bb213a0ad0e62b4152f6fedda0da33a6/faps-1.2.5.tar.gz#sha256=21ed7fc8d500ede35dcd8c4bb4db6bfc54f5ee9420be23cb5cfd3ea893d48d36 (from https://pypi.org/simple/faps/), version: 1.2.5
2020-07-07T18:17:00,218   Found link https://files.pythonhosted.org/packages/c1/eb/5ccddbe34ffab340c64e702a0b85b57cf8fbd2f703602b74c2cb17f8503e/faps-1.3.0.tar.gz#sha256=b4252dd178953347c74c49d7745b3d8ae958185dbc8408907d5cd1d069eacdef (from https://pypi.org/simple/faps/), version: 1.3.0
2020-07-07T18:17:00,219   Found link https://files.pythonhosted.org/packages/f2/45/f48fdd471db9f6aeac8764fcdac969488d9b2db3c7031382ea1b429ff402/faps-2.0.0.tar.gz#sha256=b2a2e9ec637d34907fc1540c9433bf7495eb0cbd8c557e28ef3477c393de9064 (from https://pypi.org/simple/faps/), version: 2.0.0
2020-07-07T18:17:00,220   Found link https://files.pythonhosted.org/packages/63/38/b35e2b5c10175f5296f83b307bab17c477b25d404a88f7d25240380fee4c/faps-2.1.0.tar.gz#sha256=2b7f23c502409c3251bb49de7847642e8f21b4f9ddc5034e982072552ef4a374 (from https://pypi.org/simple/faps/), version: 2.1.0
2020-07-07T18:17:00,221   Found link https://files.pythonhosted.org/packages/99/29/eb781e13af9e2c1e08593afe16f668462915b379dc4b7854eee384c5daeb/faps-2.2.1.tar.gz#sha256=66040c13e95a41f0cf153cf9ca905fc6861ff0e97090f49f24575173e2319411 (from https://pypi.org/simple/faps/), version: 2.2.1
2020-07-07T18:17:00,223   Found link https://files.pythonhosted.org/packages/04/e0/982dc62003c768a37d27ef17acf62e0a9ee6a7719279fe43f9d5407fd2ad/faps-2.3.0.tar.gz#sha256=a2c8101e0cecc1b5d47581d1009f2153db57ac79a0e2afb876acab6ad42c2a9d (from https://pypi.org/simple/faps/), version: 2.3.0
2020-07-07T18:17:00,224   Found link https://files.pythonhosted.org/packages/d4/02/4ec46ef1f168b5541b52e1310d99a36b6bacc3bfb12e888036bc7913789d/faps-2.4.0.tar.gz#sha256=7ed94c98e3d05ed5c413b2297b3563cde9dc47060eb65f835de1708ee7968469 (from https://pypi.org/simple/faps/), version: 2.4.0
2020-07-07T18:17:00,225   Found link https://files.pythonhosted.org/packages/8a/76/38c8eba324f082a4a91ec3e9d1d09bb7079ca4d4c12e674c492c1bc64242/faps-2.5.0.tar.gz#sha256=d8a40e6a46f7f7c6492abca3741d0a7d54dfaade3a52712a3ca19a3380619bf6 (from https://pypi.org/simple/faps/), version: 2.5.0
2020-07-07T18:17:00,241 Given no hashes to check 1 links for project 'faps': discarding no candidates
2020-07-07T18:17:00,243 Using version 2.5.0 (newest of versions: 2.5.0)
2020-07-07T18:17:00,250 Collecting faps==2.5.0
2020-07-07T18:17:00,255   Created temporary directory: /tmp/pip-unpack-8s09m5q9
2020-07-07T18:17:00,540   Downloading faps-2.5.0.tar.gz (53 kB)
2020-07-07T18:17:00,804   Added faps==2.5.0 from https://files.pythonhosted.org/packages/8a/76/38c8eba324f082a4a91ec3e9d1d09bb7079ca4d4c12e674c492c1bc64242/faps-2.5.0.tar.gz#sha256=d8a40e6a46f7f7c6492abca3741d0a7d54dfaade3a52712a3ca19a3380619bf6 to build tracker '/tmp/pip-req-tracker-y64eh0fn'
2020-07-07T18:17:00,806     Running setup.py (path:/tmp/pip-wheel-cfhkjiiu/faps/setup.py) egg_info for package faps
2020-07-07T18:17:00,808     Created temporary directory: /tmp/pip-pip-egg-info-ccm47fws
2020-07-07T18:17:00,809     Running command python setup.py egg_info
2020-07-07T18:17:03,276     running egg_info
2020-07-07T18:17:03,281     creating /tmp/pip-pip-egg-info-ccm47fws/faps.egg-info
2020-07-07T18:17:03,284     writing requirements to /tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/requires.txt
2020-07-07T18:17:03,287     writing top-level names to /tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/top_level.txt
2020-07-07T18:17:03,289     writing dependency_links to /tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/dependency_links.txt
2020-07-07T18:17:03,292     writing /tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/PKG-INFO
2020-07-07T18:17:03,300     writing manifest file '/tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/SOURCES.txt'
2020-07-07T18:17:03,683     reading manifest file '/tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/SOURCES.txt'
2020-07-07T18:17:03,694     writing manifest file '/tmp/pip-pip-egg-info-ccm47fws/faps.egg-info/SOURCES.txt'
2020-07-07T18:17:03,843   Source in /tmp/pip-wheel-cfhkjiiu/faps has version 2.5.0, which satisfies requirement faps==2.5.0 from https://files.pythonhosted.org/packages/8a/76/38c8eba324f082a4a91ec3e9d1d09bb7079ca4d4c12e674c492c1bc64242/faps-2.5.0.tar.gz#sha256=d8a40e6a46f7f7c6492abca3741d0a7d54dfaade3a52712a3ca19a3380619bf6
2020-07-07T18:17:03,845   Removed faps==2.5.0 from https://files.pythonhosted.org/packages/8a/76/38c8eba324f082a4a91ec3e9d1d09bb7079ca4d4c12e674c492c1bc64242/faps-2.5.0.tar.gz#sha256=d8a40e6a46f7f7c6492abca3741d0a7d54dfaade3a52712a3ca19a3380619bf6 from build tracker '/tmp/pip-req-tracker-y64eh0fn'
2020-07-07T18:17:03,849 Building wheels for collected packages: faps
2020-07-07T18:17:03,859   Created temporary directory: /tmp/pip-wheel-bh7ko2f7
2020-07-07T18:17:03,860   Building wheel for faps (setup.py): started
2020-07-07T18:17:03,861   Destination directory: /tmp/pip-wheel-bh7ko2f7
2020-07-07T18:17:03,862   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cfhkjiiu/faps/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cfhkjiiu/faps/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-bh7ko2f7
2020-07-07T18:17:06,231   running bdist_wheel
2020-07-07T18:17:06,247   running build
2020-07-07T18:17:06,248   running build_py
2020-07-07T18:17:06,602   creating build
2020-07-07T18:17:06,603   creating build/lib
2020-07-07T18:17:06,605   creating build/lib/faps
2020-07-07T18:17:06,607   copying faps/matingEvents.py -> build/lib/faps
2020-07-07T18:17:06,612   copying faps/mating_summary.py -> build/lib/faps
2020-07-07T18:17:06,616   copying faps/convert_genotypes.py -> build/lib/faps
2020-07-07T18:17:06,620   copying faps/paternity_list.py -> build/lib/faps
2020-07-07T18:17:06,624   copying faps/export_to_colony.py -> build/lib/faps
2020-07-07T18:17:06,631   copying faps/calculate_geno_probs.py -> build/lib/faps
2020-07-07T18:17:06,636   copying faps/mating_events.py -> build/lib/faps
2020-07-07T18:17:06,643   copying faps/squash_siblings.py -> build/lib/faps
2020-07-07T18:17:06,648   copying faps/do_clustering.py -> build/lib/faps
2020-07-07T18:17:06,652   copying faps/make_power.py -> build/lib/faps
2020-07-07T18:17:06,659   copying faps/make_parents.py -> build/lib/faps
2020-07-07T18:17:06,662   copying faps/calculate_SNP_calls.py -> build/lib/faps
2020-07-07T18:17:06,666   copying faps/accuracy_paternity.py -> build/lib/faps
2020-07-07T18:17:06,673   copying faps/read_genotypes.py -> build/lib/faps
2020-07-07T18:17:06,679   copying faps/read_paternity_array.py -> build/lib/faps
2020-07-07T18:17:06,684   copying faps/sibship_partitions.py -> build/lib/faps
2020-07-07T18:17:06,690   copying faps/sibshipCluster.py -> build/lib/faps
2020-07-07T18:17:06,696   copying faps/draw_fathers.py -> build/lib/faps
2020-07-07T18:17:06,702   copying faps/unique_rows.py -> build/lib/faps
2020-07-07T18:17:06,706   copying faps/make_sibships.py -> build/lib/faps
2020-07-07T18:17:06,711   copying faps/transition_probability.py -> build/lib/faps
2020-07-07T18:17:06,717   copying faps/sibship_clustering.py -> build/lib/faps
2020-07-07T18:17:06,724   copying faps/paternity_array.py -> build/lib/faps
2020-07-07T18:17:06,730   copying faps/pairwise_lik_fullsibs.py -> build/lib/faps
2020-07-07T18:17:06,735   copying faps/partition_accuracy.py -> build/lib/faps
2020-07-07T18:17:06,739   copying faps/paternityArray.py -> build/lib/faps
2020-07-07T18:17:06,745   copying faps/effective_nloci.py -> build/lib/faps
2020-07-07T18:17:06,748   copying faps/lik_partition.py -> build/lib/faps
2020-07-07T18:17:06,754   copying faps/alogsumexp.py -> build/lib/faps
2020-07-07T18:17:06,760   copying faps/pr_transition.py -> build/lib/faps
2020-07-07T18:17:06,766   copying faps/genotypeArray.py -> build/lib/faps
2020-07-07T18:17:06,772   copying faps/sibship_transitions.py -> build/lib/faps
2020-07-07T18:17:06,777   copying faps/incompatibilities.py -> build/lib/faps
2020-07-07T18:17:06,780   copying faps/__init__.py -> build/lib/faps
2020-07-07T18:17:06,785   copying faps/pr_unsampled.py -> build/lib/faps
2020-07-07T18:17:06,789   copying faps/summarise_sires.py -> build/lib/faps
2020-07-07T18:17:06,795   copying faps/lik_unsampled_fathers.py -> build/lib/faps
2020-07-07T18:17:06,801   copying faps/parent_index.py -> build/lib/faps
2020-07-07T18:17:06,807   copying faps/make_generation.py -> build/lib/faps
2020-07-07T18:17:06,813   copying faps/sibship_paternity.py -> build/lib/faps
2020-07-07T18:17:06,817   copying faps/lik_sampled_fathers.py -> build/lib/faps
2020-07-07T18:17:06,822   copying faps/relation_matrix.py -> build/lib/faps
2020-07-07T18:17:06,826   copying faps/make_offspring.py -> build/lib/faps
2020-07-07T18:17:06,829   running egg_info
2020-07-07T18:17:06,866   creating faps.egg-info
2020-07-07T18:17:06,870   writing requirements to faps.egg-info/requires.txt
2020-07-07T18:17:06,873   writing dependency_links to faps.egg-info/dependency_links.txt
2020-07-07T18:17:06,875   writing top-level names to faps.egg-info/top_level.txt
2020-07-07T18:17:06,877   writing faps.egg-info/PKG-INFO
2020-07-07T18:17:06,883   writing manifest file 'faps.egg-info/SOURCES.txt'
2020-07-07T18:17:06,895   reading manifest file 'faps.egg-info/SOURCES.txt'
2020-07-07T18:17:06,906   writing manifest file 'faps.egg-info/SOURCES.txt'
2020-07-07T18:17:06,924   installing to build/bdist.linux-armv7l/wheel
2020-07-07T18:17:06,925   running install
2020-07-07T18:17:06,927   running install_lib
2020-07-07T18:17:06,934   creating build/bdist.linux-armv7l
2020-07-07T18:17:06,935   creating build/bdist.linux-armv7l/wheel
2020-07-07T18:17:06,940   creating build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,942   copying build/lib/faps/matingEvents.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,948   copying build/lib/faps/mating_summary.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,952   copying build/lib/faps/convert_genotypes.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,956   copying build/lib/faps/paternity_list.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,961   copying build/lib/faps/export_to_colony.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,966   copying build/lib/faps/calculate_geno_probs.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,970   copying build/lib/faps/mating_events.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,975   copying build/lib/faps/squash_siblings.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,981   copying build/lib/faps/do_clustering.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,987   copying build/lib/faps/make_power.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,995   copying build/lib/faps/make_parents.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:06,1000   copying build/lib/faps/calculate_SNP_calls.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,004   copying build/lib/faps/accuracy_paternity.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,008   copying build/lib/faps/read_genotypes.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,013   copying build/lib/faps/read_paternity_array.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,017   copying build/lib/faps/sibship_partitions.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,022   copying build/lib/faps/sibshipCluster.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,031   copying build/lib/faps/draw_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,037   copying build/lib/faps/unique_rows.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,041   copying build/lib/faps/make_sibships.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,045   copying build/lib/faps/transition_probability.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,049   copying build/lib/faps/sibship_clustering.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,054   copying build/lib/faps/paternity_array.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,059   copying build/lib/faps/pairwise_lik_fullsibs.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,064   copying build/lib/faps/partition_accuracy.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,068   copying build/lib/faps/paternityArray.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,074   copying build/lib/faps/effective_nloci.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,079   copying build/lib/faps/lik_partition.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,086   copying build/lib/faps/alogsumexp.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,091   copying build/lib/faps/pr_transition.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,096   copying build/lib/faps/genotypeArray.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,103   copying build/lib/faps/sibship_transitions.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,107   copying build/lib/faps/incompatibilities.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,111   copying build/lib/faps/__init__.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,115   copying build/lib/faps/pr_unsampled.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,120   copying build/lib/faps/summarise_sires.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,126   copying build/lib/faps/lik_unsampled_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,131   copying build/lib/faps/parent_index.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,136   copying build/lib/faps/make_generation.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,142   copying build/lib/faps/sibship_paternity.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,147   copying build/lib/faps/lik_sampled_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,151   copying build/lib/faps/relation_matrix.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,155   copying build/lib/faps/make_offspring.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-07T18:17:07,159   running install_egg_info
2020-07-07T18:17:07,185   Copying faps.egg-info to build/bdist.linux-armv7l/wheel/faps-2.5.0-py3.5.egg-info
2020-07-07T18:17:07,218   running install_scripts
2020-07-07T18:17:07,397   creating build/bdist.linux-armv7l/wheel/faps-2.5.0.dist-info/WHEEL
2020-07-07T18:17:07,793   Building wheel for faps (setup.py): finished with status 'done'
2020-07-07T18:17:07,799   Created wheel for faps: filename=faps-2.5.0-py3-none-any.whl size=79103 sha256=7f97306b5aa1b3e5d7c19432292954f8fcea48be61f3c64e8c454bc151933f75
2020-07-07T18:17:07,800   Stored in directory: /tmp/pip-ephem-wheel-cache-53x435md/wheels/ed/9b/ea/9db8b44c5c58c7b75a086548cf69d253b2cf65856581480772
2020-07-07T18:17:07,804 Successfully built faps
2020-07-07T18:17:07,825 Removed build tracker: '/tmp/pip-req-tracker-y64eh0fn'