2020-07-08T06:27:43,551 Created temporary directory: /tmp/pip-ephem-wheel-cache-ojkfapoz 2020-07-08T06:27:43,556 Created temporary directory: /tmp/pip-req-tracker-hvrhuj96 2020-07-08T06:27:43,556 Initialized build tracking at /tmp/pip-req-tracker-hvrhuj96 2020-07-08T06:27:43,557 Created build tracker: /tmp/pip-req-tracker-hvrhuj96 2020-07-08T06:27:43,557 Entered build tracker: /tmp/pip-req-tracker-hvrhuj96 2020-07-08T06:27:43,558 Created temporary directory: /tmp/pip-wheel-iqyf_j5u 2020-07-08T06:27:43,575 1 location(s) to search for versions of scidat: 2020-07-08T06:27:43,575 * https://pypi.org/simple/scidat/ 2020-07-08T06:27:43,576 Fetching project page and analyzing links: https://pypi.org/simple/scidat/ 2020-07-08T06:27:43,577 Getting page https://pypi.org/simple/scidat/ 2020-07-08T06:27:43,579 Found index url https://pypi.org/simple 2020-07-08T06:27:43,780 Skipping link: No binaries permitted for scidat: https://files.pythonhosted.org/packages/88/a2/6673071adf1204853d0ff89ae77c09a70aca3e639638ca43c0dac8e835e6/scidat-1.0.0-py3-none-any.whl#sha256=4e04f97c87a865de9844300c83997a3864290ec6472d37fac86f46ab14866201 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6) 2020-07-08T06:27:43,781 Found link https://files.pythonhosted.org/packages/b0/8f/d9ae0b8645d73be8c1aac28bd29acbbfd427e7e5eeeb9d8949429c163c50/scidat-1.0.0.tar.gz#sha256=b559e32c757b1c3c074243b966c33dce767e8115f3cec7d3e199f4997e202350 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6), version: 1.0.0 2020-07-08T06:27:43,782 Skipping link: No binaries permitted for scidat: https://files.pythonhosted.org/packages/6a/26/3d24569cd6225b4ff02b8111cffe59ff95b4ba4a47019b18c22833ed39f8/scidat-1.0.1-py3-none-any.whl#sha256=ea425f3a1ec512d3bb01430ee27dcac1597c15cf7afcc76b28de6ef041fdaf4f (from https://pypi.org/simple/scidat/) (requires-python:>=3.6) 2020-07-08T06:27:43,783 Found link https://files.pythonhosted.org/packages/18/88/aed02e34944484da746677f0059fb1f48693f189d2e1c74cb1fc70c2ff94/scidat-1.0.1.tar.gz#sha256=120f6cc0f1dd9df0a69fc206e697ed43712d3509a94a5551f949456e287015fc (from https://pypi.org/simple/scidat/) (requires-python:>=3.6), version: 1.0.1 2020-07-08T06:27:43,783 Skipping link: No binaries permitted for scidat: https://files.pythonhosted.org/packages/32/24/2e9ea24910b62c6300bc04c99b31ad5ac93b38e4c938fce42287e9c79677/scidat-1.0.2-py3-none-any.whl#sha256=ce847b1cbdaddcf94c49710ae5d2156ab3a4bb4f23f77d25b893814f4fef51e3 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6) 2020-07-08T06:27:43,784 Found link https://files.pythonhosted.org/packages/7a/16/e6cf78cce2780d03f4fdec1c09508a4974e955b0ff70f0917594b7f72179/scidat-1.0.2.tar.gz#sha256=080bf69f1d996e088475ad115fc94e527e4597cb458e5886f5ef1bf89dfac1a8 (from https://pypi.org/simple/scidat/) (requires-python:>=3.6), version: 1.0.2 2020-07-08T06:27:43,792 Given no hashes to check 1 links for project 'scidat': discarding no candidates 2020-07-08T06:27:43,793 Using version 1.0.2 (newest of versions: 1.0.2) 2020-07-08T06:27:43,798 Collecting scidat==1.0.2 2020-07-08T06:27:43,802 Created temporary directory: /tmp/pip-unpack-rf40rya0 2020-07-08T06:27:44,329 Downloading scidat-1.0.2.tar.gz (18.2 MB) 2020-07-08T06:27:50,227 Added scidat==1.0.2 from https://files.pythonhosted.org/packages/7a/16/e6cf78cce2780d03f4fdec1c09508a4974e955b0ff70f0917594b7f72179/scidat-1.0.2.tar.gz#sha256=080bf69f1d996e088475ad115fc94e527e4597cb458e5886f5ef1bf89dfac1a8 to build tracker '/tmp/pip-req-tracker-hvrhuj96' 2020-07-08T06:27:50,231 Running setup.py (path:/tmp/pip-wheel-iqyf_j5u/scidat/setup.py) egg_info for package scidat 2020-07-08T06:27:50,233 Created temporary directory: /tmp/pip-pip-egg-info-_9c38hil 2020-07-08T06:27:50,233 Running command python setup.py egg_info 2020-07-08T06:27:52,031 running egg_info 2020-07-08T06:27:52,035 creating /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info 2020-07-08T06:27:52,037 writing /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/PKG-INFO 2020-07-08T06:27:52,043 writing dependency_links to /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/dependency_links.txt 2020-07-08T06:27:52,046 writing entry points to /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/entry_points.txt 2020-07-08T06:27:52,049 writing requirements to /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/requires.txt 2020-07-08T06:27:52,051 writing top-level names to /tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/top_level.txt 2020-07-08T06:27:52,054 writing manifest file '/tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/SOURCES.txt' 2020-07-08T06:27:52,358 reading manifest file '/tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/SOURCES.txt' 2020-07-08T06:27:52,366 writing manifest file '/tmp/pip-pip-egg-info-_9c38hil/scidat.egg-info/SOURCES.txt' 2020-07-08T06:27:52,486 Source in /tmp/pip-wheel-iqyf_j5u/scidat has version 1.0.2, which satisfies requirement scidat==1.0.2 from https://files.pythonhosted.org/packages/7a/16/e6cf78cce2780d03f4fdec1c09508a4974e955b0ff70f0917594b7f72179/scidat-1.0.2.tar.gz#sha256=080bf69f1d996e088475ad115fc94e527e4597cb458e5886f5ef1bf89dfac1a8 2020-07-08T06:27:52,488 Removed scidat==1.0.2 from https://files.pythonhosted.org/packages/7a/16/e6cf78cce2780d03f4fdec1c09508a4974e955b0ff70f0917594b7f72179/scidat-1.0.2.tar.gz#sha256=080bf69f1d996e088475ad115fc94e527e4597cb458e5886f5ef1bf89dfac1a8 from build tracker '/tmp/pip-req-tracker-hvrhuj96' 2020-07-08T06:27:52,493 Building wheels for collected packages: scidat 2020-07-08T06:27:52,502 Created temporary directory: /tmp/pip-wheel-pct2w39n 2020-07-08T06:27:52,503 Building wheel for scidat (setup.py): started 2020-07-08T06:27:52,504 Destination directory: /tmp/pip-wheel-pct2w39n 2020-07-08T06:27:52,504 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-iqyf_j5u/scidat/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-iqyf_j5u/scidat/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pct2w39n 2020-07-08T06:27:54,240 running bdist_wheel 2020-07-08T06:27:54,252 running build 2020-07-08T06:27:54,253 running build_py 2020-07-08T06:27:54,526 creating build 2020-07-08T06:27:54,527 creating build/lib 2020-07-08T06:27:54,529 creating build/lib/scidat 2020-07-08T06:27:54,531 copying scidat/__init__.py -> build/lib/scidat 2020-07-08T06:27:54,535 copying scidat/__main__.py -> build/lib/scidat 2020-07-08T06:27:54,539 copying scidat/api.py -> build/lib/scidat 2020-07-08T06:27:54,545 copying scidat/annotate.py -> build/lib/scidat 2020-07-08T06:27:54,552 copying scidat/download.py -> build/lib/scidat 2020-07-08T06:27:54,568 installing to build/bdist.linux-armv7l/wheel 2020-07-08T06:27:54,568 running install 2020-07-08T06:27:54,570 running install_lib 2020-07-08T06:27:54,577 creating build/bdist.linux-armv7l 2020-07-08T06:27:54,578 creating build/bdist.linux-armv7l/wheel 2020-07-08T06:27:54,582 creating build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,584 copying build/lib/scidat/__init__.py -> build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,589 copying build/lib/scidat/__main__.py -> build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,593 copying build/lib/scidat/api.py -> build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,599 copying build/lib/scidat/annotate.py -> build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,605 copying build/lib/scidat/download.py -> build/bdist.linux-armv7l/wheel/scidat 2020-07-08T06:27:54,611 running install_data 2020-07-08T06:27:54,619 creating build/bdist.linux-armv7l/wheel/scidat-1.0.2.data 2020-07-08T06:27:54,620 creating build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data 2020-07-08T06:27:54,624 copying LICENSE -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,633 copying tests/data/d3f73c0f-d518-4e91-b038-a4360495ee27.htseq.counts.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,637 copying tests/data/jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5989-01A-11D-1670-05.gdc_hg38.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,642 copying tests/data/clinical.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,648 copying tests/data/sample_sheet.txt -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,653 copying tests/data/mutation_TCGA-KN-8422_20200410.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,659 copying tests/data/manifest.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:54,664 copying tests/data/gdc-client -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:56,342 copying tests/data/mutation_TCGA-A3-3308_20200410.tsv -> build/bdist.linux-armv7l/wheel/scidat-1.0.2.data/data/ 2020-07-08T06:27:56,357 running install_egg_info 2020-07-08T06:27:56,394 running egg_info 2020-07-08T06:27:56,396 writing scidat.egg-info/PKG-INFO 2020-07-08T06:27:56,402 writing dependency_links to scidat.egg-info/dependency_links.txt 2020-07-08T06:27:56,406 writing entry points to scidat.egg-info/entry_points.txt 2020-07-08T06:27:56,409 writing requirements to scidat.egg-info/requires.txt 2020-07-08T06:27:56,412 writing top-level names to scidat.egg-info/top_level.txt 2020-07-08T06:27:56,422 reading manifest file 'scidat.egg-info/SOURCES.txt' 2020-07-08T06:27:56,432 writing manifest file 'scidat.egg-info/SOURCES.txt' 2020-07-08T06:27:56,436 Copying scidat.egg-info to build/bdist.linux-armv7l/wheel/scidat-1.0.2-py3.7.egg-info 2020-07-08T06:27:56,466 running install_scripts 2020-07-08T06:27:56,630 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-07-08T06:27:56,645 creating build/bdist.linux-armv7l/wheel/scidat-1.0.2.dist-info/WHEEL 2020-07-08T06:27:56,651 creating '/tmp/pip-wheel-pct2w39n/scidat-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-07-08T06:27:56,657 adding 'scidat/__init__.py' 2020-07-08T06:27:56,660 adding 'scidat/__main__.py' 2020-07-08T06:27:56,664 adding 'scidat/annotate.py' 2020-07-08T06:27:56,670 adding 'scidat/api.py' 2020-07-08T06:27:56,676 adding 'scidat/download.py' 2020-07-08T06:27:56,689 adding 'scidat-1.0.2.data/data/LICENSE' 2020-07-08T06:27:56,694 adding 'scidat-1.0.2.data/data/clinical.txt' 2020-07-08T06:27:56,697 adding 'scidat-1.0.2.data/data/d3f73c0f-d518-4e91-b038-a4360495ee27.htseq.counts.tsv' 2020-07-08T06:28:00,123 adding 'scidat-1.0.2.data/data/gdc-client' 2020-07-08T06:28:00,347 adding 'scidat-1.0.2.data/data/jhu-usc.edu_KIRC.HumanMethylation450.6.lvl-3.TCGA-CZ-5989-01A-11D-1670-05.gdc_hg38.txt' 2020-07-08T06:28:00,350 adding 'scidat-1.0.2.data/data/manifest.tsv' 2020-07-08T06:28:00,353 adding 'scidat-1.0.2.data/data/mutation_TCGA-A3-3308_20200410.tsv' 2020-07-08T06:28:00,356 adding 'scidat-1.0.2.data/data/mutation_TCGA-KN-8422_20200410.tsv' 2020-07-08T06:28:00,359 adding 'scidat-1.0.2.data/data/sample_sheet.txt' 2020-07-08T06:28:00,372 adding 'scidat-1.0.2.dist-info/LICENSE' 2020-07-08T06:28:00,375 adding 'scidat-1.0.2.dist-info/METADATA' 2020-07-08T06:28:00,377 adding 'scidat-1.0.2.dist-info/WHEEL' 2020-07-08T06:28:00,379 adding 'scidat-1.0.2.dist-info/entry_points.txt' 2020-07-08T06:28:00,381 adding 'scidat-1.0.2.dist-info/top_level.txt' 2020-07-08T06:28:00,382 adding 'scidat-1.0.2.dist-info/RECORD' 2020-07-08T06:28:01,969 removing build/bdist.linux-armv7l/wheel 2020-07-08T06:28:02,169 Building wheel for scidat (setup.py): finished with status 'done' 2020-07-08T06:28:02,434 Created wheel for scidat: filename=scidat-1.0.2-py3-none-any.whl size=18176198 sha256=814947972c4675126f6d82ff0b1bd6a3293922567a448443026047d2f9c73be2 2020-07-08T06:28:02,435 Stored in directory: /tmp/pip-ephem-wheel-cache-ojkfapoz/wheels/04/18/1a/bcb8d2a398e2a46d88596b76a553be3f802236924c78fceba1 2020-07-08T06:28:02,439 Successfully built scidat 2020-07-08T06:28:05,603 Removed build tracker: '/tmp/pip-req-tracker-hvrhuj96'