2020-07-08T20:15:38,630 Created temporary directory: /tmp/pip-ephem-wheel-cache-dujbuobs
2020-07-08T20:15:38,635 Created temporary directory: /tmp/pip-req-tracker-liqnquxy
2020-07-08T20:15:38,635 Initialized build tracking at /tmp/pip-req-tracker-liqnquxy
2020-07-08T20:15:38,636 Created build tracker: /tmp/pip-req-tracker-liqnquxy
2020-07-08T20:15:38,636 Entered build tracker: /tmp/pip-req-tracker-liqnquxy
2020-07-08T20:15:38,638 Created temporary directory: /tmp/pip-wheel-bv0hdrxl
2020-07-08T20:15:38,654 1 location(s) to search for versions of single-cell-portal:
2020-07-08T20:15:38,654 * https://pypi.org/simple/single-cell-portal/
2020-07-08T20:15:38,655 Fetching project page and analyzing links: https://pypi.org/simple/single-cell-portal/
2020-07-08T20:15:38,656 Getting page https://pypi.org/simple/single-cell-portal/
2020-07-08T20:15:38,658 Found index url https://pypi.org/simple
2020-07-08T20:15:38,857   Found link https://files.pythonhosted.org/packages/ee/4f/950d61fb08a24ddea2bedfd7923e10a7e3fa09c51496285e9196625a2b0e/single-cell-portal-0.1.tar.gz#sha256=1876f005daaff8f0a4c63e6f1542f5f1fcd98cb8fddc66a7c68c9986972941f2 (from https://pypi.org/simple/single-cell-portal/) (requires-python:>=3.7), version: 0.1
2020-07-08T20:15:38,858   Skipping link: No binaries permitted for single-cell-portal: https://files.pythonhosted.org/packages/6d/b2/eb578693343a685cc3896d6cf666fad2ea16e18199883dc173baca0b5a17/single_cell_portal-0.1-py3-none-any.whl#sha256=032ffeb440cc244913f93033406fe7b819adff12b38c3e713cd890e1f0de4240 (from https://pypi.org/simple/single-cell-portal/) (requires-python:>=3.7)
2020-07-08T20:15:38,865 Given no hashes to check 1 links for project 'single-cell-portal': discarding no candidates
2020-07-08T20:15:38,866 Using version 0.1 (newest of versions: 0.1)
2020-07-08T20:15:38,872 Collecting single-cell-portal==0.1
2020-07-08T20:15:38,875   Created temporary directory: /tmp/pip-unpack-7san8qi7
2020-07-08T20:15:39,090   Downloading single-cell-portal-0.1.tar.gz (63 kB)
2020-07-08T20:15:39,399   Added single-cell-portal==0.1 from https://files.pythonhosted.org/packages/ee/4f/950d61fb08a24ddea2bedfd7923e10a7e3fa09c51496285e9196625a2b0e/single-cell-portal-0.1.tar.gz#sha256=1876f005daaff8f0a4c63e6f1542f5f1fcd98cb8fddc66a7c68c9986972941f2 to build tracker '/tmp/pip-req-tracker-liqnquxy'
2020-07-08T20:15:39,402     Running setup.py (path:/tmp/pip-wheel-bv0hdrxl/single-cell-portal/setup.py) egg_info for package single-cell-portal
2020-07-08T20:15:39,404     Created temporary directory: /tmp/pip-pip-egg-info-6sjsvurc
2020-07-08T20:15:39,405     Running command python setup.py egg_info
2020-07-08T20:15:41,183     running egg_info
2020-07-08T20:15:41,188     creating /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info
2020-07-08T20:15:41,190     writing /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/PKG-INFO
2020-07-08T20:15:41,195     writing dependency_links to /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/dependency_links.txt
2020-07-08T20:15:41,198     writing entry points to /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/entry_points.txt
2020-07-08T20:15:41,201     writing requirements to /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/requires.txt
2020-07-08T20:15:41,204     writing top-level names to /tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/top_level.txt
2020-07-08T20:15:41,208     writing manifest file '/tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/SOURCES.txt'
2020-07-08T20:15:41,488     reading manifest file '/tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/SOURCES.txt'
2020-07-08T20:15:41,497     writing manifest file '/tmp/pip-pip-egg-info-6sjsvurc/single_cell_portal.egg-info/SOURCES.txt'
2020-07-08T20:15:41,617   Source in /tmp/pip-wheel-bv0hdrxl/single-cell-portal has version 0.1, which satisfies requirement single-cell-portal==0.1 from https://files.pythonhosted.org/packages/ee/4f/950d61fb08a24ddea2bedfd7923e10a7e3fa09c51496285e9196625a2b0e/single-cell-portal-0.1.tar.gz#sha256=1876f005daaff8f0a4c63e6f1542f5f1fcd98cb8fddc66a7c68c9986972941f2
2020-07-08T20:15:41,619   Removed single-cell-portal==0.1 from https://files.pythonhosted.org/packages/ee/4f/950d61fb08a24ddea2bedfd7923e10a7e3fa09c51496285e9196625a2b0e/single-cell-portal-0.1.tar.gz#sha256=1876f005daaff8f0a4c63e6f1542f5f1fcd98cb8fddc66a7c68c9986972941f2 from build tracker '/tmp/pip-req-tracker-liqnquxy'
2020-07-08T20:15:41,623 Building wheels for collected packages: single-cell-portal
2020-07-08T20:15:41,632   Created temporary directory: /tmp/pip-wheel-tek3jnzy
2020-07-08T20:15:41,633   Building wheel for single-cell-portal (setup.py): started
2020-07-08T20:15:41,633   Destination directory: /tmp/pip-wheel-tek3jnzy
2020-07-08T20:15:41,634   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bv0hdrxl/single-cell-portal/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bv0hdrxl/single-cell-portal/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tek3jnzy
2020-07-08T20:15:43,426   running bdist_wheel
2020-07-08T20:15:43,438   running build
2020-07-08T20:15:43,439   running build_py
2020-07-08T20:15:43,716   creating build
2020-07-08T20:15:43,717   creating build/lib
2020-07-08T20:15:43,718   creating build/lib/scripts
2020-07-08T20:15:43,720   copying scripts/cell_ranger_to_scp.py -> build/lib/scripts
2020-07-08T20:15:43,726   copying scripts/PortalFiles.py -> build/lib/scripts
2020-07-08T20:15:43,733   copying scripts/cli_parser.py -> build/lib/scripts
2020-07-08T20:15:43,739   copying scripts/swap_column_values.py -> build/lib/scripts
2020-07-08T20:15:43,744   copying scripts/scan_study_descriptions_species.py -> build/lib/scripts
2020-07-08T20:15:43,749   copying scripts/scp_to_infercnv.py -> build/lib/scripts
2020-07-08T20:15:43,755   copying scripts/scan_study_descriptions_lpp.py -> build/lib/scripts
2020-07-08T20:15:43,760   copying scripts/print_study_descriptions_species.py -> build/lib/scripts
2020-07-08T20:15:43,763   copying scripts/Tester.py -> build/lib/scripts
2020-07-08T20:15:43,767   copying scripts/Commandline.py -> build/lib/scripts
2020-07-08T20:15:43,771   copying scripts/manage_study.py -> build/lib/scripts
2020-07-08T20:15:43,777   copying scripts/scan_study_descriptions.py -> build/lib/scripts
2020-07-08T20:15:43,782   copying scripts/extract_study_descriptions.py -> build/lib/scripts
2020-07-08T20:15:43,787   copying scripts/scp_api.py -> build/lib/scripts
2020-07-08T20:15:43,796   copying scripts/verify_portal_file.py -> build/lib/scripts
2020-07-08T20:15:43,802   copying scripts/make_toy_data.py -> build/lib/scripts
2020-07-08T20:15:43,810   copying scripts/orchestra_methods.py -> build/lib/scripts
2020-07-08T20:15:43,817   copying scripts/scan_study_descriptions_lpp_accessionOnly.py -> build/lib/scripts
2020-07-08T20:15:43,821   copying scripts/authenticate.py -> build/lib/scripts
2020-07-08T20:15:43,825   copying scripts/SortSparseMatrix.py -> build/lib/scripts
2020-07-08T20:15:43,829   copying scripts/__init__.py -> build/lib/scripts
2020-07-08T20:15:43,832   copying scripts/extract_public_study_metadata.py -> build/lib/scripts
2020-07-08T20:15:43,835   copying scripts/print_study_descriptions_lpp.py -> build/lib/scripts
2020-07-08T20:15:43,840   copying scripts/PortalFilesTester.py -> build/lib/scripts
2020-07-08T20:15:43,854   creating build/lib/scripts/genomes
2020-07-08T20:15:43,856   copying scripts/genomes/fetch_upstream_assemblies.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,862   copying scripts/genomes/parse_genome_annotations.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,867   copying scripts/genomes/process_genome_references.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,871   copying scripts/genomes/parse_genome_assemblies.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,876   copying scripts/genomes/persist_annotation_metadata.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,881   copying scripts/genomes/__init__.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,885   copying scripts/genomes/utils.py -> build/lib/scripts/genomes
2020-07-08T20:15:43,893   creating build/lib/scripts/ideogram
2020-07-08T20:15:43,895   copying scripts/ideogram/matrix_to_ideogram_annots.py -> build/lib/scripts/ideogram
2020-07-08T20:15:43,901   copying scripts/ideogram/cluster_groups.py -> build/lib/scripts/ideogram
2020-07-08T20:15:43,905   copying scripts/ideogram/__init__.py -> build/lib/scripts/ideogram
2020-07-08T20:15:43,919   installing to build/bdist.linux-armv7l/wheel
2020-07-08T20:15:43,920   running install
2020-07-08T20:15:43,921   running install_lib
2020-07-08T20:15:43,928   creating build/bdist.linux-armv7l
2020-07-08T20:15:43,928   creating build/bdist.linux-armv7l/wheel
2020-07-08T20:15:43,933   creating build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,935   copying build/lib/scripts/cell_ranger_to_scp.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,941   copying build/lib/scripts/PortalFiles.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,948   copying build/lib/scripts/cli_parser.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,954   copying build/lib/scripts/swap_column_values.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,958   copying build/lib/scripts/scan_study_descriptions_species.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,963   copying build/lib/scripts/scp_to_infercnv.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,969   copying build/lib/scripts/scan_study_descriptions_lpp.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,974   copying build/lib/scripts/print_study_descriptions_species.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,980   copying build/lib/scripts/Tester.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,985   copying build/lib/scripts/Commandline.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:43,992   creating build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:43,994   copying build/lib/scripts/genomes/fetch_upstream_assemblies.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,001   copying build/lib/scripts/genomes/parse_genome_annotations.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,008   copying build/lib/scripts/genomes/process_genome_references.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,014   copying build/lib/scripts/genomes/parse_genome_assemblies.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,020   copying build/lib/scripts/genomes/persist_annotation_metadata.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,027   copying build/lib/scripts/genomes/__init__.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,031   copying build/lib/scripts/genomes/utils.py -> build/bdist.linux-armv7l/wheel/scripts/genomes
2020-07-08T20:15:44,038   copying build/lib/scripts/manage_study.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,044   copying build/lib/scripts/scan_study_descriptions.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,048   copying build/lib/scripts/extract_study_descriptions.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,053   copying build/lib/scripts/scp_api.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,060   copying build/lib/scripts/verify_portal_file.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,067   copying build/lib/scripts/make_toy_data.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,075   copying build/lib/scripts/orchestra_methods.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,083   copying build/lib/scripts/scan_study_descriptions_lpp_accessionOnly.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,087   copying build/lib/scripts/authenticate.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,091   copying build/lib/scripts/SortSparseMatrix.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,095   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,099   copying build/lib/scripts/extract_public_study_metadata.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,103   copying build/lib/scripts/print_study_descriptions_lpp.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,110   creating build/bdist.linux-armv7l/wheel/scripts/ideogram
2020-07-08T20:15:44,112   copying build/lib/scripts/ideogram/matrix_to_ideogram_annots.py -> build/bdist.linux-armv7l/wheel/scripts/ideogram
2020-07-08T20:15:44,120   copying build/lib/scripts/ideogram/cluster_groups.py -> build/bdist.linux-armv7l/wheel/scripts/ideogram
2020-07-08T20:15:44,125   copying build/lib/scripts/ideogram/__init__.py -> build/bdist.linux-armv7l/wheel/scripts/ideogram
2020-07-08T20:15:44,129   copying build/lib/scripts/PortalFilesTester.py -> build/bdist.linux-armv7l/wheel/scripts
2020-07-08T20:15:44,138   running install_egg_info
2020-07-08T20:15:44,175   running egg_info
2020-07-08T20:15:44,177   writing single_cell_portal.egg-info/PKG-INFO
2020-07-08T20:15:44,181   writing dependency_links to single_cell_portal.egg-info/dependency_links.txt
2020-07-08T20:15:44,184   writing entry points to single_cell_portal.egg-info/entry_points.txt
2020-07-08T20:15:44,187   writing requirements to single_cell_portal.egg-info/requires.txt
2020-07-08T20:15:44,189   writing top-level names to single_cell_portal.egg-info/top_level.txt
2020-07-08T20:15:44,203   reading manifest file 'single_cell_portal.egg-info/SOURCES.txt'
2020-07-08T20:15:44,215   writing manifest file 'single_cell_portal.egg-info/SOURCES.txt'
2020-07-08T20:15:44,218   Copying single_cell_portal.egg-info to build/bdist.linux-armv7l/wheel/single_cell_portal-0.1-py3.7.egg-info
2020-07-08T20:15:44,245   running install_scripts
2020-07-08T20:15:44,398   creating build/bdist.linux-armv7l/wheel/single_cell_portal-0.1.dist-info/WHEEL
2020-07-08T20:15:44,404   creating '/tmp/pip-wheel-tek3jnzy/single_cell_portal-0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-07-08T20:15:44,410   adding 'scripts/Commandline.py'
2020-07-08T20:15:44,416   adding 'scripts/PortalFiles.py'
2020-07-08T20:15:44,423   adding 'scripts/PortalFilesTester.py'
2020-07-08T20:15:44,427   adding 'scripts/SortSparseMatrix.py'
2020-07-08T20:15:44,429   adding 'scripts/Tester.py'
2020-07-08T20:15:44,431   adding 'scripts/__init__.py'
2020-07-08T20:15:44,434   adding 'scripts/authenticate.py'
2020-07-08T20:15:44,437   adding 'scripts/cell_ranger_to_scp.py'
2020-07-08T20:15:44,440   adding 'scripts/cli_parser.py'
2020-07-08T20:15:44,443   adding 'scripts/extract_public_study_metadata.py'
2020-07-08T20:15:44,445   adding 'scripts/extract_study_descriptions.py'
2020-07-08T20:15:44,451   adding 'scripts/make_toy_data.py'
2020-07-08T20:15:44,456   adding 'scripts/manage_study.py'
2020-07-08T20:15:44,460   adding 'scripts/orchestra_methods.py'
2020-07-08T20:15:44,463   adding 'scripts/print_study_descriptions_lpp.py'
2020-07-08T20:15:44,466   adding 'scripts/print_study_descriptions_species.py'
2020-07-08T20:15:44,468   adding 'scripts/scan_study_descriptions.py'
2020-07-08T20:15:44,471   adding 'scripts/scan_study_descriptions_lpp.py'
2020-07-08T20:15:44,473   adding 'scripts/scan_study_descriptions_lpp_accessionOnly.py'
2020-07-08T20:15:44,476   adding 'scripts/scan_study_descriptions_species.py'
2020-07-08T20:15:44,483   adding 'scripts/scp_api.py'
2020-07-08T20:15:44,486   adding 'scripts/scp_to_infercnv.py'
2020-07-08T20:15:44,489   adding 'scripts/swap_column_values.py'
2020-07-08T20:15:44,492   adding 'scripts/verify_portal_file.py'
2020-07-08T20:15:44,496   adding 'scripts/genomes/__init__.py'
2020-07-08T20:15:44,499   adding 'scripts/genomes/fetch_upstream_assemblies.py'
2020-07-08T20:15:44,503   adding 'scripts/genomes/parse_genome_annotations.py'
2020-07-08T20:15:44,506   adding 'scripts/genomes/parse_genome_assemblies.py'
2020-07-08T20:15:44,509   adding 'scripts/genomes/persist_annotation_metadata.py'
2020-07-08T20:15:44,512   adding 'scripts/genomes/process_genome_references.py'
2020-07-08T20:15:44,515   adding 'scripts/genomes/utils.py'
2020-07-08T20:15:44,519   adding 'scripts/ideogram/__init__.py'
2020-07-08T20:15:44,521   adding 'scripts/ideogram/cluster_groups.py'
2020-07-08T20:15:44,525   adding 'scripts/ideogram/matrix_to_ideogram_annots.py'
2020-07-08T20:15:44,530   adding 'single_cell_portal-0.1.dist-info/METADATA'
2020-07-08T20:15:44,532   adding 'single_cell_portal-0.1.dist-info/WHEEL'
2020-07-08T20:15:44,534   adding 'single_cell_portal-0.1.dist-info/entry_points.txt'
2020-07-08T20:15:44,536   adding 'single_cell_portal-0.1.dist-info/top_level.txt'
2020-07-08T20:15:44,537   adding 'single_cell_portal-0.1.dist-info/RECORD'
2020-07-08T20:15:44,546   removing build/bdist.linux-armv7l/wheel
2020-07-08T20:15:44,703   Building wheel for single-cell-portal (setup.py): finished with status 'done'
2020-07-08T20:15:44,709   Created wheel for single-cell-portal: filename=single_cell_portal-0.1-py3-none-any.whl size=78575 sha256=f4fed572de897d01562d22500b563ab92edc238977ba6269c1ac699fbb84dd1d
2020-07-08T20:15:44,709   Stored in directory: /tmp/pip-ephem-wheel-cache-dujbuobs/wheels/99/1c/b1/3298c2dee46b3dca3a2f22271cb1a585cda96862802845f0c9
2020-07-08T20:15:44,713 Successfully built single-cell-portal
2020-07-08T20:15:44,734 Removed build tracker: '/tmp/pip-req-tracker-liqnquxy'