2020-07-14T05:02:33,227 Created temporary directory: /tmp/pip-ephem-wheel-cache-2jcufg5c
2020-07-14T05:02:33,231 Created temporary directory: /tmp/pip-req-tracker-s_y9g_to
2020-07-14T05:02:33,232 Initialized build tracking at /tmp/pip-req-tracker-s_y9g_to
2020-07-14T05:02:33,233 Created build tracker: /tmp/pip-req-tracker-s_y9g_to
2020-07-14T05:02:33,233 Entered build tracker: /tmp/pip-req-tracker-s_y9g_to
2020-07-14T05:02:33,234 Created temporary directory: /tmp/pip-wheel-u357r78q
2020-07-14T05:02:33,251 1 location(s) to search for versions of pastis:
2020-07-14T05:02:33,251 * https://pypi.org/simple/pastis/
2020-07-14T05:02:33,252 Fetching project page and analyzing links: https://pypi.org/simple/pastis/
2020-07-14T05:02:33,253 Getting page https://pypi.org/simple/pastis/
2020-07-14T05:02:33,255 Found index url https://pypi.org/simple
2020-07-14T05:02:33,461   Found link https://files.pythonhosted.org/packages/2a/64/2bd48039f989b92789c09bb8b1cea8096e3a03b1371ed465f57016f1ddae/pastis-0.0.1.tar.gz#sha256=902028da84a51bd7369bd7c224f9533bac494d17c7ac7fd56e47273913904e99 (from https://pypi.org/simple/pastis/), version: 0.0.1
2020-07-14T05:02:33,462   Found link https://files.pythonhosted.org/packages/28/f8/e0b9e7494c953760d5cd7885f5ee462e8297a5e47ebd45397a641c98c6d1/pastis-0.1.0.tar.gz#sha256=686213587b4ac9400f5e33e7834a61d0b2541c101304b719ef5a0f1a421173ac (from https://pypi.org/simple/pastis/), version: 0.1.0
2020-07-14T05:02:33,463   Found link https://files.pythonhosted.org/packages/4e/be/48886faba4527eaf48a4915ef74a48664db12e902810ff32970b3bd9b687/pastis-0.2.0.tar.gz#sha256=84bccbe6a2f3b6e95a30d6bdd0fce13e040d38bd6ef210e04121f7fa31041c4e (from https://pypi.org/simple/pastis/), version: 0.2.0
2020-07-14T05:02:33,463   Found link https://files.pythonhosted.org/packages/f3/b5/66032c37cfb1b02d06b6ae75a716c386beb7941299230392e63e0c394073/pastis-0.2.1.tar.gz#sha256=34a92b2b64d1c969a2410818f0e6e4637d2f1a63500322c4e37327f56a698550 (from https://pypi.org/simple/pastis/), version: 0.2.1
2020-07-14T05:02:33,464   Found link https://files.pythonhosted.org/packages/18/2f/4211c8e255357b542edf0f4fb39fae2668e0596d4a7b4b0f6663b1698f00/pastis-0.2.2.tar.gz#sha256=29e946688a07bdba20fa4b8a946d21616248eb78afb0c4a49daf9fbea302cb9a (from https://pypi.org/simple/pastis/), version: 0.2.2
2020-07-14T05:02:33,464   Found link https://files.pythonhosted.org/packages/41/e0/2bdc6d53d1d3a6f4036a3be6a0d32b0b172703ed0c3c1b08aaa34f241702/pastis-0.3.0.tar.gz#sha256=40734cd9ccac77bd3ff6a5e3b8808d547e5b4cda00a73349de32336df48a471e (from https://pypi.org/simple/pastis/), version: 0.3.0
2020-07-14T05:02:33,465   Found link https://files.pythonhosted.org/packages/8a/67/fcf3ec25bb6b2214c2300539fc83fa8d48f919cc95cb1135273682a09e35/pastis-0.3.2rc0.tar.gz#sha256=14c850135c08152961e3415187c6e6233f9451cb6a3f9e48a330b2000f4e44e9 (from https://pypi.org/simple/pastis/), version: 0.3.2rc0
2020-07-14T05:02:33,466   Found link https://files.pythonhosted.org/packages/a0/23/0c744480a3c3f8b3fa429dc1bf67fbc87f48b69e636dabbad1c27808f53e/pastis-0.3.2.tar.gz#sha256=f6a5bfd77bfbed28c017b28e528c9114c1a0af56141d123a30d59b9c2a0caac3 (from https://pypi.org/simple/pastis/), version: 0.3.2
2020-07-14T05:02:33,466   Found link https://files.pythonhosted.org/packages/1c/ba/ac902db422d66dc56b7f47c1e40fd8bef32ba5911a99143ce2dbdb81532a/pastis-0.3.3a0.tar.gz#sha256=51143ea5fb4057b2c9c67ede55666d797eb8e36a6ac22b2d4b2de04e04d198c9 (from https://pypi.org/simple/pastis/), version: 0.3.3a0
2020-07-14T05:02:33,467   Found link https://files.pythonhosted.org/packages/de/24/f1b8aff79784e8e1be1710faa02fe0a2129fb923692773a028d28d3353db/pastis-0.3.3.tar.gz#sha256=fadca8f3f69b55681b5b435bd2562cd1c803538a054511e11600a8fa520c892b (from https://pypi.org/simple/pastis/), version: 0.3.3
2020-07-14T05:02:33,467   Found link https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf (from https://pypi.org/simple/pastis/), version: 0.4.0
2020-07-14T05:02:33,478 Given no hashes to check 1 links for project 'pastis': discarding no candidates
2020-07-14T05:02:33,479 Using version 0.4.0 (newest of versions: 0.4.0)
2020-07-14T05:02:33,485 Collecting pastis==0.4.0
2020-07-14T05:02:33,488   Created temporary directory: /tmp/pip-unpack-20vyhkev
2020-07-14T05:02:33,570   Downloading pastis-0.4.0.tar.gz (28.7 MB)
2020-07-14T05:02:56,398   Added pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf to build tracker '/tmp/pip-req-tracker-s_y9g_to'
2020-07-14T05:02:56,401     Running setup.py (path:/tmp/pip-wheel-u357r78q/pastis/setup.py) egg_info for package pastis
2020-07-14T05:02:56,403     Created temporary directory: /tmp/pip-pip-egg-info-t_q1zp1j
2020-07-14T05:02:56,404     Running command python setup.py egg_info
2020-07-14T05:02:58,334     running egg_info
2020-07-14T05:02:58,339     creating /tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info
2020-07-14T05:02:58,341     writing /tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/PKG-INFO
2020-07-14T05:02:58,347     writing dependency_links to /tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/dependency_links.txt
2020-07-14T05:02:58,351     writing requirements to /tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/requires.txt
2020-07-14T05:02:58,353     writing top-level names to /tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/top_level.txt
2020-07-14T05:02:58,357     writing manifest file '/tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/SOURCES.txt'
2020-07-14T05:02:58,378     reading manifest file '/tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/SOURCES.txt'
2020-07-14T05:02:58,385     writing manifest file '/tmp/pip-pip-egg-info-t_q1zp1j/pastis.egg-info/SOURCES.txt'
2020-07-14T05:02:58,387     /usr/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'configuration'
2020-07-14T05:02:58,388       warnings.warn(msg)
2020-07-14T05:02:58,492   Source in /tmp/pip-wheel-u357r78q/pastis has version 0.4.0, which satisfies requirement pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf
2020-07-14T05:02:58,493   Removed pastis==0.4.0 from https://files.pythonhosted.org/packages/64/a0/396cb8b6bbc987a5fdc9d95d2c4bc06972938fea265d18ab744532ea01dd/pastis-0.4.0.tar.gz#sha256=9c921e3d17f92a44147f31e70ade25dc5cdd0175d85b1410ff36b020202c1fdf from build tracker '/tmp/pip-req-tracker-s_y9g_to'
2020-07-14T05:02:58,496 Building wheels for collected packages: pastis
2020-07-14T05:02:58,505   Created temporary directory: /tmp/pip-wheel-n7wc9am7
2020-07-14T05:02:58,506   Building wheel for pastis (setup.py): started
2020-07-14T05:02:58,507   Destination directory: /tmp/pip-wheel-n7wc9am7
2020-07-14T05:02:58,507   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u357r78q/pastis/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u357r78q/pastis/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-n7wc9am7
2020-07-14T05:03:01,216   Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)Appending pastis.utils configuration to pastis
2020-07-14T05:03:01,217   Ignoring attempt to set 'name' (from 'pastis' to 'pastis.utils')
2020-07-14T05:03:01,220   Warning: Assuming default configuration (pastis/optimization/{setup_optimization,setup}.py was not found)Appending pastis.optimization configuration to pastis
2020-07-14T05:03:01,220   Ignoring attempt to set 'name' (from 'pastis' to 'pastis.optimization')
2020-07-14T05:03:01,243   Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)Appending pastis.externals.iced.utils configuration to pastis.externals.iced
2020-07-14T05:03:01,244   Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.utils')
2020-07-14T05:03:01,263   Appending pastis.externals.iced.datasets configuration to pastis.externals.iced
2020-07-14T05:03:01,264   Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.datasets')
2020-07-14T05:03:01,274   non-existing path in 'pastis/externals/iced/io': '../src/cblas'
2020-07-14T05:03:01,276   non-existing path in 'pastis/externals/iced/io': '../src/cblas'
2020-07-14T05:03:01,277   Appending pastis.externals.iced.io configuration to pastis.externals.iced
2020-07-14T05:03:01,278   Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.io')
2020-07-14T05:03:01,281   Warning: Assuming default configuration (pastis/externals/iced/normalization/{setup_normalization,setup}.py was not found)Appending pastis.externals.iced.normalization configuration to pastis.externals.iced
2020-07-14T05:03:01,282   Ignoring attempt to set 'name' (from 'pastis.externals.iced' to 'pastis.externals.iced.normalization')
2020-07-14T05:03:01,283   non-existing path in 'pastis/externals/iced': '../src/cblas'
2020-07-14T05:03:01,284   non-existing path in 'pastis/externals/iced': '../src/cblas'
2020-07-14T05:03:01,285   Appending pastis.externals.iced configuration to pastis.externals
2020-07-14T05:03:01,286   Ignoring attempt to set 'name' (from 'pastis.externals' to 'pastis.externals.iced')
2020-07-14T05:03:01,286   Appending pastis.externals configuration to pastis
2020-07-14T05:03:01,287   Ignoring attempt to set 'name' (from 'pastis' to 'pastis.externals')
2020-07-14T05:03:01,289   Warning: Assuming default configuration (pastis/datasets/{setup_datasets,setup}.py was not found)Appending pastis.datasets configuration to pastis
2020-07-14T05:03:01,289   Ignoring attempt to set 'name' (from 'pastis' to 'pastis.datasets')
2020-07-14T05:03:01,302   Warning: Assuming default configuration (pastis/io/read/{setup_read,setup}.py was not found)Appending pastis.io.read configuration to pastis.io
2020-07-14T05:03:01,303   Ignoring attempt to set 'name' (from 'pastis.io' to 'pastis.io.read')
2020-07-14T05:03:01,307   Warning: Assuming default configuration (pastis/io/write_struct/{setup_write_struct,setup}.py was not found)Appending pastis.io.write_struct configuration to pastis.io
2020-07-14T05:03:01,309   Ignoring attempt to set 'name' (from 'pastis.io' to 'pastis.io.write_struct')
2020-07-14T05:03:01,310   Appending pastis.io configuration to pastis
2020-07-14T05:03:01,311   Ignoring attempt to set 'name' (from 'pastis' to 'pastis.io')
2020-07-14T05:03:01,312   Appending pastis configuration to
2020-07-14T05:03:01,313   Ignoring attempt to set 'name' (from '' to 'pastis')
2020-07-14T05:03:01,337   running bdist_wheel
2020-07-14T05:03:01,340   running build
2020-07-14T05:03:01,340   running config_cc
2020-07-14T05:03:01,341   unifing config_cc, config, build_clib, build_ext, build commands --compiler options
2020-07-14T05:03:01,342   running config_fc
2020-07-14T05:03:01,342   unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
2020-07-14T05:03:01,343   running build_src
2020-07-14T05:03:01,343   build_src
2020-07-14T05:03:01,343   building extension "pastis.externals.iced.io.fastio_" sources
2020-07-14T05:03:01,344   building extension "pastis.externals.iced.io.read" sources
2020-07-14T05:03:01,344   building extension "pastis.externals.iced.normalization/_normalization_" sources
2020-07-14T05:03:01,344   building extension "pastis.externals.iced._filter_" sources
2020-07-14T05:03:01,345   building data_files sources
2020-07-14T05:03:01,345   build_src: building npy-pkg config files
2020-07-14T05:03:01,349   running build_py
2020-07-14T05:03:01,353   creating build
2020-07-14T05:03:01,354   creating build/lib.linux-armv7l-3.7
2020-07-14T05:03:01,355   creating build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,359   copying pastis/algorithms.py -> build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,365   copying pastis/setup.py -> build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,369   copying pastis/config.py -> build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,374   copying pastis/fastio.py -> build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,379   copying pastis/__init__.py -> build/lib.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,385   creating build/lib.linux-armv7l-3.7/pastis/utils
2020-07-14T05:03:01,388   copying pastis/utils/bezier.py -> build/lib.linux-armv7l-3.7/pastis/utils
2020-07-14T05:03:01,393   copying pastis/utils/__init__.py -> build/lib.linux-armv7l-3.7/pastis/utils
2020-07-14T05:03:01,397   copying pastis/utils/validation.py -> build/lib.linux-armv7l-3.7/pastis/utils
2020-07-14T05:03:01,405   creating build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,407   copying pastis/optimization/constraints.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,415   copying pastis/optimization/counts.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,424   copying pastis/optimization/utils_poisson.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,430   copying pastis/optimization/mds_old.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,435   copying pastis/optimization/poisson_model.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,441   copying pastis/optimization/negative_binomial_structure.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,447   copying pastis/optimization/negative_binomial.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,452   copying pastis/optimization/callbacks.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,458   copying pastis/optimization/estimate_alpha_beta.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,465   copying pastis/optimization/multiscale_optimization.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,471   copying pastis/optimization/poisson_structure.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,477   copying pastis/optimization/mds.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,483   copying pastis/optimization/piecewise_whole_genome.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,490   copying pastis/optimization/pastis_algorithms.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,499   copying pastis/optimization/__init__.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,503   copying pastis/optimization/initialization.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,509   copying pastis/optimization/utils.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,514   copying pastis/optimization/poisson.py -> build/lib.linux-armv7l-3.7/pastis/optimization
2020-07-14T05:03:01,523   creating build/lib.linux-armv7l-3.7/pastis/externals
2020-07-14T05:03:01,525   copying pastis/externals/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals
2020-07-14T05:03:01,530   copying pastis/externals/test_externals_setup.py -> build/lib.linux-armv7l-3.7/pastis/externals
2020-07-14T05:03:01,535   copying pastis/externals/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals
2020-07-14T05:03:01,542   creating build/lib.linux-armv7l-3.7/pastis/externals/iced
2020-07-14T05:03:01,544   copying pastis/externals/iced/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced
2020-07-14T05:03:01,548   copying pastis/externals/iced/filter.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced
2020-07-14T05:03:01,554   copying pastis/externals/iced/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced
2020-07-14T05:03:01,560   creating build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,563   copying pastis/externals/iced/utils/_vis.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,568   copying pastis/externals/iced/utils/_genome.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,574   copying pastis/externals/iced/utils/_validation.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,579   copying pastis/externals/iced/utils/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,583   copying pastis/externals/iced/utils/validation.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/utils
2020-07-14T05:03:01,590   creating build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets
2020-07-14T05:03:01,592   copying pastis/externals/iced/datasets/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets
2020-07-14T05:03:01,597   copying pastis/externals/iced/datasets/base.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets
2020-07-14T05:03:01,601   copying pastis/externals/iced/datasets/dldata.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets
2020-07-14T05:03:01,606   copying pastis/externals/iced/datasets/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets
2020-07-14T05:03:01,613   creating build/lib.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,615   copying pastis/externals/iced/io/setup.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,620   copying pastis/externals/iced/io/_io_else.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,625   copying pastis/externals/iced/io/_io_pandas.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,630   copying pastis/externals/iced/io/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,636   creating build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization
2020-07-14T05:03:01,639   copying pastis/externals/iced/normalization/_ca_utils.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization
2020-07-14T05:03:01,645   copying pastis/externals/iced/normalization/__init__.py -> build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization
2020-07-14T05:03:01,653   creating build/lib.linux-armv7l-3.7/pastis/datasets
2020-07-14T05:03:01,655   copying pastis/datasets/_generated_datasets.py -> build/lib.linux-armv7l-3.7/pastis/datasets
2020-07-14T05:03:01,660   copying pastis/datasets/__init__.py -> build/lib.linux-armv7l-3.7/pastis/datasets
2020-07-14T05:03:01,667   creating build/lib.linux-armv7l-3.7/pastis/io
2020-07-14T05:03:01,669   copying pastis/io/setup.py -> build/lib.linux-armv7l-3.7/pastis/io
2020-07-14T05:03:01,673   copying pastis/io/__init__.py -> build/lib.linux-armv7l-3.7/pastis/io
2020-07-14T05:03:01,680   creating build/lib.linux-armv7l-3.7/pastis/io/read
2020-07-14T05:03:01,682   copying pastis/io/read/hiclib.py -> build/lib.linux-armv7l-3.7/pastis/io/read
2020-07-14T05:03:01,688   copying pastis/io/read/all_data.py -> build/lib.linux-armv7l-3.7/pastis/io/read
2020-07-14T05:03:01,693   copying pastis/io/read/__init__.py -> build/lib.linux-armv7l-3.7/pastis/io/read
2020-07-14T05:03:01,700   creating build/lib.linux-armv7l-3.7/pastis/io/write_struct
2020-07-14T05:03:01,702   copying pastis/io/write_struct/pdb.py -> build/lib.linux-armv7l-3.7/pastis/io/write_struct
2020-07-14T05:03:01,708   copying pastis/io/write_struct/__init__.py -> build/lib.linux-armv7l-3.7/pastis/io/write_struct
2020-07-14T05:03:01,732   running build_ext
2020-07-14T05:03:01,774   customize UnixCCompiler
2020-07-14T05:03:01,776   customize UnixCCompiler using build_ext
2020-07-14T05:03:01,781   building 'pastis.externals.iced.io.fastio_' extension
2020-07-14T05:03:01,782   compiling C sources
2020-07-14T05:03:01,782   C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2020-07-14T05:03:01,784   creating build/temp.linux-armv7l-3.7/pastis
2020-07-14T05:03:01,784   creating build/temp.linux-armv7l-3.7/pastis/externals
2020-07-14T05:03:01,786   creating build/temp.linux-armv7l-3.7/pastis/externals/iced
2020-07-14T05:03:01,788   creating build/temp.linux-armv7l-3.7/pastis/externals/iced/io
2020-07-14T05:03:01,790   compile options: '-I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
2020-07-14T05:03:01,792   arm-linux-gnueabihf-gcc: pastis/externals/iced/io/fastio_.c
2020-07-14T05:03:02,530   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-07-14T05:03:02,531                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-07-14T05:03:02,531                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-07-14T05:03:02,532                    from pastis/externals/iced/io/fastio_.c:613:
2020-07-14T05:03:02,532   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-07-14T05:03:02,532    #warning "Using deprecated NumPy API, disable it with " \
2020-07-14T05:03:02,533     ^~~~~~~
2020-07-14T05:03:09,332   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so
2020-07-14T05:03:09,610   building 'pastis.externals.iced.io.read' extension
2020-07-14T05:03:09,611   compiling C sources
2020-07-14T05:03:09,612   C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2020-07-14T05:03:09,614   compile options: '-I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
2020-07-14T05:03:09,615   arm-linux-gnueabihf-gcc: pastis/externals/iced/io/read.c
2020-07-14T05:03:09,912   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/io/read.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so
2020-07-14T05:03:10,118   building 'pastis.externals.iced.normalization/_normalization_' extension
2020-07-14T05:03:10,118   compiling C sources
2020-07-14T05:03:10,119   C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2020-07-14T05:03:10,120   creating build/temp.linux-armv7l-3.7/pastis/externals/iced/normalization
2020-07-14T05:03:10,121   compile options: '-I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
2020-07-14T05:03:10,122   arm-linux-gnueabihf-gcc: pastis/externals/iced/normalization/_normalization_.c
2020-07-14T05:03:10,712   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-07-14T05:03:10,713                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-07-14T05:03:10,714                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-07-14T05:03:10,714                    from pastis/externals/iced/normalization/_normalization_.c:613:
2020-07-14T05:03:10,715   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-07-14T05:03:10,715    #warning "Using deprecated NumPy API, disable it with " \
2020-07-14T05:03:10,715     ^~~~~~~
2020-07-14T05:03:16,015   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/normalization/_normalization_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization/_normalization_.cpython-37m-arm-linux-gnueabihf.so
2020-07-14T05:03:16,261   building 'pastis.externals.iced._filter_' extension
2020-07-14T05:03:16,262   compiling C sources
2020-07-14T05:03:16,263   C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

2020-07-14T05:03:16,265   compile options: '-I../src/cblas -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c'
2020-07-14T05:03:16,265   arm-linux-gnueabihf-gcc: pastis/externals/iced/_filter_.c
2020-07-14T05:03:16,856   In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
2020-07-14T05:03:16,856                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2020-07-14T05:03:16,857                    from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2020-07-14T05:03:16,857                    from pastis/externals/iced/_filter_.c:613:
2020-07-14T05:03:16,858   /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2020-07-14T05:03:16,858    #warning "Using deprecated NumPy API, disable it with " \
2020-07-14T05:03:16,859     ^~~~~~~
2020-07-14T05:03:22,173   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/pastis/externals/iced/_filter_.o -lm -o build/lib.linux-armv7l-3.7/pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so
2020-07-14T05:03:22,420   running build_scripts
2020-07-14T05:03:22,421   creating build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,425   copying and adjusting pastis/script/pastis-mds -> build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,430   copying and adjusting pastis/script/pastis-nmds -> build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,434   copying and adjusting pastis/script/pastis-pm1 -> build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,439   copying and adjusting pastis/script/pastis-pm2 -> build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,444   copying and adjusting pastis/script/pastis-poisson -> build/scripts.linux-armv7l-3.7
2020-07-14T05:03:22,448   changing mode of build/scripts.linux-armv7l-3.7/pastis-mds from 644 to 755
2020-07-14T05:03:22,449   changing mode of build/scripts.linux-armv7l-3.7/pastis-nmds from 644 to 755
2020-07-14T05:03:22,450   changing mode of build/scripts.linux-armv7l-3.7/pastis-pm1 from 644 to 755
2020-07-14T05:03:22,451   changing mode of build/scripts.linux-armv7l-3.7/pastis-pm2 from 644 to 755
2020-07-14T05:03:22,452   changing mode of build/scripts.linux-armv7l-3.7/pastis-poisson from 644 to 755
2020-07-14T05:03:22,454   installing to build/bdist.linux-armv7l/wheel
2020-07-14T05:03:22,455   running install
2020-07-14T05:03:22,456   running install_lib
2020-07-14T05:03:22,468   creating build/bdist.linux-armv7l
2020-07-14T05:03:22,469   creating build/bdist.linux-armv7l/wheel
2020-07-14T05:03:22,473   creating build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,475   copying build/lib.linux-armv7l-3.7/pastis/algorithms.py -> build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,482   creating build/bdist.linux-armv7l/wheel/pastis/utils
2020-07-14T05:03:22,484   copying build/lib.linux-armv7l-3.7/pastis/utils/bezier.py -> build/bdist.linux-armv7l/wheel/pastis/utils
2020-07-14T05:03:22,488   copying build/lib.linux-armv7l-3.7/pastis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/utils
2020-07-14T05:03:22,493   copying build/lib.linux-armv7l-3.7/pastis/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/utils
2020-07-14T05:03:22,499   copying build/lib.linux-armv7l-3.7/pastis/setup.py -> build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,505   creating build/bdist.linux-armv7l/wheel/pastis/io
2020-07-14T05:03:22,509   creating build/bdist.linux-armv7l/wheel/pastis/io/read
2020-07-14T05:03:22,512   copying build/lib.linux-armv7l-3.7/pastis/io/read/hiclib.py -> build/bdist.linux-armv7l/wheel/pastis/io/read
2020-07-14T05:03:22,516   copying build/lib.linux-armv7l-3.7/pastis/io/read/all_data.py -> build/bdist.linux-armv7l/wheel/pastis/io/read
2020-07-14T05:03:22,521   copying build/lib.linux-armv7l-3.7/pastis/io/read/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io/read
2020-07-14T05:03:22,525   copying build/lib.linux-armv7l-3.7/pastis/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/io
2020-07-14T05:03:22,531   creating build/bdist.linux-armv7l/wheel/pastis/io/write_struct
2020-07-14T05:03:22,534   copying build/lib.linux-armv7l-3.7/pastis/io/write_struct/pdb.py -> build/bdist.linux-armv7l/wheel/pastis/io/write_struct
2020-07-14T05:03:22,540   copying build/lib.linux-armv7l-3.7/pastis/io/write_struct/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io/write_struct
2020-07-14T05:03:22,545   copying build/lib.linux-armv7l-3.7/pastis/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/io
2020-07-14T05:03:22,550   copying build/lib.linux-armv7l-3.7/pastis/config.py -> build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,557   creating build/bdist.linux-armv7l/wheel/pastis/externals
2020-07-14T05:03:22,560   copying build/lib.linux-armv7l-3.7/pastis/externals/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals
2020-07-14T05:03:22,566   copying build/lib.linux-armv7l-3.7/pastis/externals/test_externals_setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals
2020-07-14T05:03:22,573   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced
2020-07-14T05:03:22,577   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,580   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/_vis.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,586   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/_genome.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,593   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/_validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,598   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,604   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/utils/validation.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/utils
2020-07-14T05:03:22,610   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced
2020-07-14T05:03:22,617   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization
2020-07-14T05:03:22,620   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization/_ca_utils.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization
2020-07-14T05:03:22,628   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization/_normalization_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization
2020-07-14T05:03:22,649   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/normalization
2020-07-14T05:03:22,655   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced
2020-07-14T05:03:22,677   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,679   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,704   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,711   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,717   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/_io_else.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,722   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/_io_pandas.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,728   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/io/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/io
2020-07-14T05:03:22,734   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/filter.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced
2020-07-14T05:03:22,742   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets
2020-07-14T05:03:22,744   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/setup.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets
2020-07-14T05:03:22,751   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/base.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets
2020-07-14T05:03:22,756   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/dldata.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets
2020-07-14T05:03:22,762   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets
2020-07-14T05:03:22,767   copying build/lib.linux-armv7l-3.7/pastis/externals/iced/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals/iced
2020-07-14T05:03:22,772   copying build/lib.linux-armv7l-3.7/pastis/externals/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/externals
2020-07-14T05:03:22,777   copying build/lib.linux-armv7l-3.7/pastis/fastio.py -> build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,785   creating build/bdist.linux-armv7l/wheel/pastis/datasets
2020-07-14T05:03:22,787   copying build/lib.linux-armv7l-3.7/pastis/datasets/_generated_datasets.py -> build/bdist.linux-armv7l/wheel/pastis/datasets
2020-07-14T05:03:22,794   copying build/lib.linux-armv7l-3.7/pastis/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/datasets
2020-07-14T05:03:22,801   creating build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,803   copying build/lib.linux-armv7l-3.7/pastis/optimization/constraints.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,812   copying build/lib.linux-armv7l-3.7/pastis/optimization/counts.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,821   copying build/lib.linux-armv7l-3.7/pastis/optimization/utils_poisson.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,828   copying build/lib.linux-armv7l-3.7/pastis/optimization/mds_old.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,835   copying build/lib.linux-armv7l-3.7/pastis/optimization/poisson_model.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,842   copying build/lib.linux-armv7l-3.7/pastis/optimization/negative_binomial_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,848   copying build/lib.linux-armv7l-3.7/pastis/optimization/negative_binomial.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,854   copying build/lib.linux-armv7l-3.7/pastis/optimization/callbacks.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,861   copying build/lib.linux-armv7l-3.7/pastis/optimization/estimate_alpha_beta.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,868   copying build/lib.linux-armv7l-3.7/pastis/optimization/multiscale_optimization.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,876   copying build/lib.linux-armv7l-3.7/pastis/optimization/poisson_structure.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,883   copying build/lib.linux-armv7l-3.7/pastis/optimization/mds.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,889   copying build/lib.linux-armv7l-3.7/pastis/optimization/piecewise_whole_genome.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,898   copying build/lib.linux-armv7l-3.7/pastis/optimization/pastis_algorithms.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,907   copying build/lib.linux-armv7l-3.7/pastis/optimization/__init__.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,912   copying build/lib.linux-armv7l-3.7/pastis/optimization/initialization.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,919   copying build/lib.linux-armv7l-3.7/pastis/optimization/utils.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,925   copying build/lib.linux-armv7l-3.7/pastis/optimization/poisson.py -> build/bdist.linux-armv7l/wheel/pastis/optimization
2020-07-14T05:03:22,933   copying build/lib.linux-armv7l-3.7/pastis/__init__.py -> build/bdist.linux-armv7l/wheel/pastis
2020-07-14T05:03:22,937   running install_data
2020-07-14T05:03:22,939   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data
2020-07-14T05:03:22,940   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009
2020-07-14T05:03:22,944   copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009
2020-07-14T05:03:22,952   copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009
2020-07-14T05:03:23,043   copying pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/duan2009
2020-07-14T05:03:23,050   creating build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:23,053   copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:23,074   copying pastis/externals/iced/datasets/data/servant2018/simulation_3.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:23,083   copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_seg.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:23,106   copying pastis/externals/iced/datasets/data/servant2018/simulation_3.mat -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:24,204   copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_xgi.bed -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:24,230   copying pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.mat -> build/bdist.linux-armv7l/wheel/pastis/externals/iced/datasets/data/servant2018
2020-07-14T05:03:34,144   running install_clib
2020-07-14T05:03:34,145   customize UnixCCompiler
2020-07-14T05:03:34,147   running install_egg_info
2020-07-14T05:03:34,159   running egg_info
2020-07-14T05:03:34,161   creating pastis.egg-info
2020-07-14T05:03:34,163   writing pastis.egg-info/PKG-INFO
2020-07-14T05:03:34,169   writing dependency_links to pastis.egg-info/dependency_links.txt
2020-07-14T05:03:34,174   writing requirements to pastis.egg-info/requires.txt
2020-07-14T05:03:34,176   writing top-level names to pastis.egg-info/top_level.txt
2020-07-14T05:03:34,180   writing manifest file 'pastis.egg-info/SOURCES.txt'
2020-07-14T05:03:34,249   reading manifest file 'pastis.egg-info/SOURCES.txt'
2020-07-14T05:03:34,269   writing manifest file 'pastis.egg-info/SOURCES.txt'
2020-07-14T05:03:34,272   Copying pastis.egg-info to build/bdist.linux-armv7l/wheel/pastis-0.4.0-py3.7.egg-info
2020-07-14T05:03:34,306   running install_scripts
2020-07-14T05:03:34,309   creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.data
2020-07-14T05:03:34,311   creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,314   copying build/scripts.linux-armv7l-3.7/pastis-pm2 -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,320   copying build/scripts.linux-armv7l-3.7/pastis-nmds -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,325   copying build/scripts.linux-armv7l-3.7/pastis-pm1 -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,331   copying build/scripts.linux-armv7l-3.7/pastis-mds -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,336   copying build/scripts.linux-armv7l-3.7/pastis-poisson -> build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts
2020-07-14T05:03:34,342   changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-pm2 to 755
2020-07-14T05:03:34,343   changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-nmds to 755
2020-07-14T05:03:34,344   changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-pm1 to 755
2020-07-14T05:03:34,345   changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-mds to 755
2020-07-14T05:03:34,346   changing mode of build/bdist.linux-armv7l/wheel/pastis-0.4.0.data/scripts/pastis-poisson to 755
2020-07-14T05:03:34,396   creating build/bdist.linux-armv7l/wheel/pastis-0.4.0.dist-info/WHEEL
2020-07-14T05:03:34,402   creating '/tmp/pip-wheel-n7wc9am7/pastis-0.4.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2020-07-14T05:03:34,407   adding 'pastis/__init__.py'
2020-07-14T05:03:34,410   adding 'pastis/algorithms.py'
2020-07-14T05:03:34,413   adding 'pastis/config.py'
2020-07-14T05:03:34,415   adding 'pastis/fastio.py'
2020-07-14T05:03:34,418   adding 'pastis/setup.py'
2020-07-14T05:03:34,421   adding 'pastis/datasets/__init__.py'
2020-07-14T05:03:34,424   adding 'pastis/datasets/_generated_datasets.py'
2020-07-14T05:03:34,427   adding 'pastis/externals/__init__.py'
2020-07-14T05:03:34,430   adding 'pastis/externals/setup.py'
2020-07-14T05:03:34,432   adding 'pastis/externals/test_externals_setup.py'
2020-07-14T05:03:34,436   adding 'pastis/externals/iced/__init__.py'
2020-07-14T05:03:34,492   adding 'pastis/externals/iced/_filter_.cpython-37m-arm-linux-gnueabihf.so'
2020-07-14T05:03:34,497   adding 'pastis/externals/iced/filter.py'
2020-07-14T05:03:34,499   adding 'pastis/externals/iced/setup.py'
2020-07-14T05:03:34,503   adding 'pastis/externals/iced/datasets/__init__.py'
2020-07-14T05:03:34,506   adding 'pastis/externals/iced/datasets/base.py'
2020-07-14T05:03:34,508   adding 'pastis/externals/iced/datasets/dldata.py'
2020-07-14T05:03:34,510   adding 'pastis/externals/iced/datasets/setup.py'
2020-07-14T05:03:34,516   adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.bed'
2020-07-14T05:03:34,520   adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.cnv'
2020-07-14T05:03:34,791   adding 'pastis/externals/iced/datasets/data/duan2009/duan.SC.10000.raw_sub.matrix'
2020-07-14T05:03:34,825   adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.bed'
2020-07-14T05:04:04,117   adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000.mat'
2020-07-14T05:04:07,366   adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_seg.bed'
2020-07-14T05:04:07,423   adding 'pastis/externals/iced/datasets/data/servant2018/simul_cnv3_500000_xgi.bed'
2020-07-14T05:04:07,434   adding 'pastis/externals/iced/datasets/data/servant2018/simulation_3.bed'
2020-07-14T05:04:09,887   adding 'pastis/externals/iced/datasets/data/servant2018/simulation_3.mat'
2020-07-14T05:04:10,033   adding 'pastis/externals/iced/io/__init__.py'
2020-07-14T05:04:10,036   adding 'pastis/externals/iced/io/_io_else.py'
2020-07-14T05:04:10,039   adding 'pastis/externals/iced/io/_io_pandas.py'
2020-07-14T05:04:10,112   adding 'pastis/externals/iced/io/fastio_.cpython-37m-arm-linux-gnueabihf.so'
2020-07-14T05:04:10,119   adding 'pastis/externals/iced/io/read.cpython-37m-arm-linux-gnueabihf.so'
2020-07-14T05:04:10,122   adding 'pastis/externals/iced/io/setup.py'
2020-07-14T05:04:10,126   adding 'pastis/externals/iced/normalization/__init__.py'
2020-07-14T05:04:10,131   adding 'pastis/externals/iced/normalization/_ca_utils.py'
2020-07-14T05:04:10,187   adding 'pastis/externals/iced/normalization/_normalization_.cpython-37m-arm-linux-gnueabihf.so'
2020-07-14T05:04:10,193   adding 'pastis/externals/iced/utils/__init__.py'
2020-07-14T05:04:10,197   adding 'pastis/externals/iced/utils/_genome.py'
2020-07-14T05:04:10,199   adding 'pastis/externals/iced/utils/_validation.py'
2020-07-14T05:04:10,201   adding 'pastis/externals/iced/utils/_vis.py'
2020-07-14T05:04:10,204   adding 'pastis/externals/iced/utils/validation.py'
2020-07-14T05:04:10,208   adding 'pastis/io/__init__.py'
2020-07-14T05:04:10,211   adding 'pastis/io/setup.py'
2020-07-14T05:04:10,214   adding 'pastis/io/read/__init__.py'
2020-07-14T05:04:10,217   adding 'pastis/io/read/all_data.py'
2020-07-14T05:04:10,220   adding 'pastis/io/read/hiclib.py'
2020-07-14T05:04:10,223   adding 'pastis/io/write_struct/__init__.py'
2020-07-14T05:04:10,226   adding 'pastis/io/write_struct/pdb.py'
2020-07-14T05:04:10,230   adding 'pastis/optimization/__init__.py'
2020-07-14T05:04:10,234   adding 'pastis/optimization/callbacks.py'
2020-07-14T05:04:10,239   adding 'pastis/optimization/constraints.py'
2020-07-14T05:04:10,247   adding 'pastis/optimization/counts.py'
2020-07-14T05:04:10,251   adding 'pastis/optimization/estimate_alpha_beta.py'
2020-07-14T05:04:10,254   adding 'pastis/optimization/initialization.py'
2020-07-14T05:04:10,258   adding 'pastis/optimization/mds.py'
2020-07-14T05:04:10,261   adding 'pastis/optimization/mds_old.py'
2020-07-14T05:04:10,265   adding 'pastis/optimization/multiscale_optimization.py'
2020-07-14T05:04:10,269   adding 'pastis/optimization/negative_binomial.py'
2020-07-14T05:04:10,271   adding 'pastis/optimization/negative_binomial_structure.py'
2020-07-14T05:04:10,278   adding 'pastis/optimization/pastis_algorithms.py'
2020-07-14T05:04:10,284   adding 'pastis/optimization/piecewise_whole_genome.py'
2020-07-14T05:04:10,290   adding 'pastis/optimization/poisson.py'
2020-07-14T05:04:10,293   adding 'pastis/optimization/poisson_model.py'
2020-07-14T05:04:10,297   adding 'pastis/optimization/poisson_structure.py'
2020-07-14T05:04:10,300   adding 'pastis/optimization/utils.py'
2020-07-14T05:04:10,303   adding 'pastis/optimization/utils_poisson.py'
2020-07-14T05:04:10,307   adding 'pastis/utils/__init__.py'
2020-07-14T05:04:10,309   adding 'pastis/utils/bezier.py'
2020-07-14T05:04:10,312   adding 'pastis/utils/validation.py'
2020-07-14T05:04:10,317   adding 'pastis-0.4.0.data/scripts/pastis-mds'
2020-07-14T05:04:10,319   adding 'pastis-0.4.0.data/scripts/pastis-nmds'
2020-07-14T05:04:10,321   adding 'pastis-0.4.0.data/scripts/pastis-pm1'
2020-07-14T05:04:10,323   adding 'pastis-0.4.0.data/scripts/pastis-pm2'
2020-07-14T05:04:10,326   adding 'pastis-0.4.0.data/scripts/pastis-poisson'
2020-07-14T05:04:10,331   adding 'pastis-0.4.0.dist-info/METADATA'
2020-07-14T05:04:10,333   adding 'pastis-0.4.0.dist-info/WHEEL'
2020-07-14T05:04:10,335   adding 'pastis-0.4.0.dist-info/top_level.txt'
2020-07-14T05:04:10,337   adding 'pastis-0.4.0.dist-info/RECORD'
2020-07-14T05:04:10,548   removing build/bdist.linux-armv7l/wheel
2020-07-14T05:04:10,924   Building wheel for pastis (setup.py): finished with status 'done'
2020-07-14T05:04:11,343   Created wheel for pastis: filename=pastis-0.4.0-cp37-cp37m-linux_armv7l.whl size=28869060 sha256=a3268babfdf02e71490aaa43b1c6860f74e70445bb36a35c451475d59ac2bad2
2020-07-14T05:04:11,344   Stored in directory: /tmp/pip-ephem-wheel-cache-2jcufg5c/wheels/31/0e/b9/bfa2d323ae6c672a8bd3528850a43d863851fe01b550bbc9a0
2020-07-14T05:04:11,347 Successfully built pastis
2020-07-14T05:04:16,346 Removed build tracker: '/tmp/pip-req-tracker-s_y9g_to'