2020-07-14T12:56:09,037 Created temporary directory: /tmp/pip-ephem-wheel-cache-ri4q21e4
2020-07-14T12:56:09,041 Created temporary directory: /tmp/pip-req-tracker-0znylnez
2020-07-14T12:56:09,042 Initialized build tracking at /tmp/pip-req-tracker-0znylnez
2020-07-14T12:56:09,044 Created build tracker: /tmp/pip-req-tracker-0znylnez
2020-07-14T12:56:09,044 Entered build tracker: /tmp/pip-req-tracker-0znylnez
2020-07-14T12:56:09,046 Created temporary directory: /tmp/pip-wheel-78msrm1f
2020-07-14T12:56:09,061 1 location(s) to search for versions of var2pharm:
2020-07-14T12:56:09,061 * https://pypi.org/simple/var2pharm/
2020-07-14T12:56:09,062 Fetching project page and analyzing links: https://pypi.org/simple/var2pharm/
2020-07-14T12:56:09,064 Getting page https://pypi.org/simple/var2pharm/
2020-07-14T12:56:09,068 Found index url https://pypi.org/simple
2020-07-14T12:56:09,415   Skipping link: No binaries permitted for var2pharm: https://files.pythonhosted.org/packages/d1/83/ae5ecc6a7e01ecede625f9a4d8d51cbda08c890ab24712f9371dab3ae448/var2pharm-0.0.1-py3-none-any.whl#sha256=12e8a193465124fe20da7ac36c2c7224a8fc2beeeb7903061bbef8c9a056a794 (from https://pypi.org/simple/var2pharm/)
2020-07-14T12:56:09,416   Found link https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b (from https://pypi.org/simple/var2pharm/), version: 0.0.1
2020-07-14T12:56:09,425 Given no hashes to check 1 links for project 'var2pharm': discarding no candidates
2020-07-14T12:56:09,427 Using version 0.0.1 (newest of versions: 0.0.1)
2020-07-14T12:56:09,433 Collecting var2pharm==0.0.1
2020-07-14T12:56:09,438   Created temporary directory: /tmp/pip-unpack-yilg5j6d
2020-07-14T12:56:09,670   Downloading var2pharm-0.0.1.tar.gz (131 kB)
2020-07-14T12:56:09,989   Added var2pharm==0.0.1 from https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b to build tracker '/tmp/pip-req-tracker-0znylnez'
2020-07-14T12:56:09,991     Running setup.py (path:/tmp/pip-wheel-78msrm1f/var2pharm/setup.py) egg_info for package var2pharm
2020-07-14T12:56:09,993     Created temporary directory: /tmp/pip-pip-egg-info-35o98o1c
2020-07-14T12:56:09,993     Running command python setup.py egg_info
2020-07-14T12:56:12,176     running egg_info
2020-07-14T12:56:12,185     creating /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info
2020-07-14T12:56:12,188     writing top-level names to /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/top_level.txt
2020-07-14T12:56:12,195     writing entry points to /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/entry_points.txt
2020-07-14T12:56:12,199     writing dependency_links to /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/dependency_links.txt
2020-07-14T12:56:12,203     writing /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/PKG-INFO
2020-07-14T12:56:12,210     writing requirements to /tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/requires.txt
2020-07-14T12:56:12,215     writing manifest file '/tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/SOURCES.txt'
2020-07-14T12:56:12,587     reading manifest file '/tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/SOURCES.txt'
2020-07-14T12:56:12,598     writing manifest file '/tmp/pip-pip-egg-info-35o98o1c/var2pharm.egg-info/SOURCES.txt'
2020-07-14T12:56:12,738   Source in /tmp/pip-wheel-78msrm1f/var2pharm has version 0.0.1, which satisfies requirement var2pharm==0.0.1 from https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b
2020-07-14T12:56:12,740   Removed var2pharm==0.0.1 from https://files.pythonhosted.org/packages/ad/46/b272152ba9232336dc2b11889e1a58f16b465372a2be40cad8c405a5e73a/var2pharm-0.0.1.tar.gz#sha256=e6a0030f628ef58166443169078a5ce31f85e81d94dd4d31f0f239aedcaef11b from build tracker '/tmp/pip-req-tracker-0znylnez'
2020-07-14T12:56:12,744 Building wheels for collected packages: var2pharm
2020-07-14T12:56:12,753   Created temporary directory: /tmp/pip-wheel-_eaca608
2020-07-14T12:56:12,754   Building wheel for var2pharm (setup.py): started
2020-07-14T12:56:12,755   Destination directory: /tmp/pip-wheel-_eaca608
2020-07-14T12:56:12,755   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-78msrm1f/var2pharm/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-78msrm1f/var2pharm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_eaca608
2020-07-14T12:56:14,924   running bdist_wheel
2020-07-14T12:56:14,941   running build
2020-07-14T12:56:14,942   running build_py
2020-07-14T12:56:15,289   creating build
2020-07-14T12:56:15,290   creating build/lib
2020-07-14T12:56:15,293   creating build/lib/var2pharm
2020-07-14T12:56:15,297   copying var2pharm/__main__.py -> build/lib/var2pharm
2020-07-14T12:56:15,303   copying var2pharm/report.py -> build/lib/var2pharm
2020-07-14T12:56:15,309   copying var2pharm/common.py -> build/lib/var2pharm
2020-07-14T12:56:15,314   copying var2pharm/sglib.py -> build/lib/var2pharm
2020-07-14T12:56:15,322   copying var2pharm/bam2sdf.py -> build/lib/var2pharm
2020-07-14T12:56:15,329   copying var2pharm/version.py -> build/lib/var2pharm
2020-07-14T12:56:15,335   copying var2pharm/bam2report.py -> build/lib/var2pharm
2020-07-14T12:56:15,342   copying var2pharm/__init__.py -> build/lib/var2pharm
2020-07-14T12:56:15,346   copying var2pharm/bam2gdf.py -> build/lib/var2pharm
2020-07-14T12:56:15,351   copying var2pharm/sdf2gdf.py -> build/lib/var2pharm
2020-07-14T12:56:15,357   creating build/lib/var2pharm/resources
2020-07-14T12:56:15,361   copying var2pharm/resources/__init__.py -> build/lib/var2pharm/resources
2020-07-14T12:56:15,369   creating build/lib/var2pharm/resources/pgkb
2020-07-14T12:56:15,373   copying var2pharm/resources/pgkb/__init__.py -> build/lib/var2pharm/resources/pgkb
2020-07-14T12:56:15,380   creating build/lib/var2pharm/resources/cpic
2020-07-14T12:56:15,383   copying var2pharm/resources/cpic/__init__.py -> build/lib/var2pharm/resources/cpic
2020-07-14T12:56:15,389   creating build/lib/var2pharm/resources/r
2020-07-14T12:56:15,391   copying var2pharm/resources/r/__init__.py -> build/lib/var2pharm/resources/r
2020-07-14T12:56:15,397   creating build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,400   copying var2pharm/resources/sg/__init__.py -> build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,411   copying var2pharm/resources/pgkb/actions.txt -> build/lib/var2pharm/resources/pgkb
2020-07-14T12:56:15,435   copying var2pharm/resources/cpic/cpicPairs.csv -> build/lib/var2pharm/resources/cpic
2020-07-14T12:56:15,443   copying var2pharm/resources/r/cpa.R -> build/lib/var2pharm/resources/r
2020-07-14T12:56:15,448   copying var2pharm/resources/r/plotcov.R -> build/lib/var2pharm/resources/r
2020-07-14T12:56:15,454   copying var2pharm/resources/sg/gene_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,464   copying var2pharm/resources/sg/phenotype_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,471   copying var2pharm/resources/sg/snp_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,502   copying var2pharm/resources/sg/star_table.txt -> build/lib/var2pharm/resources/sg
2020-07-14T12:56:15,535   installing to build/bdist.linux-armv7l/wheel
2020-07-14T12:56:15,537   running install
2020-07-14T12:56:15,539   running install_lib
2020-07-14T12:56:15,547   creating build/bdist.linux-armv7l
2020-07-14T12:56:15,548   creating build/bdist.linux-armv7l/wheel
2020-07-14T12:56:15,552   creating build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,554   copying build/lib/var2pharm/__main__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,559   copying build/lib/var2pharm/report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,565   copying build/lib/var2pharm/common.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,570   copying build/lib/var2pharm/sglib.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,578   copying build/lib/var2pharm/bam2sdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,583   copying build/lib/var2pharm/version.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,589   copying build/lib/var2pharm/bam2report.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,595   copying build/lib/var2pharm/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,599   copying build/lib/var2pharm/bam2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,605   creating build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T12:56:15,608   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T12:56:15,610   copying build/lib/var2pharm/resources/pgkb/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T12:56:15,615   copying build/lib/var2pharm/resources/pgkb/actions.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/pgkb
2020-07-14T12:56:15,640   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T12:56:15,643   copying build/lib/var2pharm/resources/cpic/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T12:56:15,647   copying build/lib/var2pharm/resources/cpic/cpicPairs.csv -> build/bdist.linux-armv7l/wheel/var2pharm/resources/cpic
2020-07-14T12:56:15,655   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T12:56:15,657   copying build/lib/var2pharm/resources/r/plotcov.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T12:56:15,661   copying build/lib/var2pharm/resources/r/cpa.R -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T12:56:15,665   copying build/lib/var2pharm/resources/r/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/r
2020-07-14T12:56:15,669   copying build/lib/var2pharm/resources/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources
2020-07-14T12:56:15,674   creating build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,676   copying build/lib/var2pharm/resources/sg/phenotype_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,682   copying build/lib/var2pharm/resources/sg/gene_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,690   copying build/lib/var2pharm/resources/sg/__init__.py -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,694   copying build/lib/var2pharm/resources/sg/star_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,713   copying build/lib/var2pharm/resources/sg/snp_table.txt -> build/bdist.linux-armv7l/wheel/var2pharm/resources/sg
2020-07-14T12:56:15,744   copying build/lib/var2pharm/sdf2gdf.py -> build/bdist.linux-armv7l/wheel/var2pharm
2020-07-14T12:56:15,748   running install_egg_info
2020-07-14T12:56:15,797   running egg_info
2020-07-14T12:56:15,799   writing dependency_links to var2pharm.egg-info/dependency_links.txt
2020-07-14T12:56:15,802   writing requirements to var2pharm.egg-info/requires.txt
2020-07-14T12:56:15,805   writing entry points to var2pharm.egg-info/entry_points.txt
2020-07-14T12:56:15,808   writing var2pharm.egg-info/PKG-INFO
2020-07-14T12:56:15,812   writing top-level names to var2pharm.egg-info/top_level.txt
2020-07-14T12:56:15,827   reading manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T12:56:15,840   writing manifest file 'var2pharm.egg-info/SOURCES.txt'
2020-07-14T12:56:15,844   Copying var2pharm.egg-info to build/bdist.linux-armv7l/wheel/var2pharm-0.0.1-py3.5.egg-info
2020-07-14T12:56:15,874   running install_scripts
2020-07-14T12:56:16,079   creating build/bdist.linux-armv7l/wheel/var2pharm-0.0.1.dist-info/WHEEL
2020-07-14T12:56:16,507   Building wheel for var2pharm (setup.py): finished with status 'done'
2020-07-14T12:56:16,514   Created wheel for var2pharm: filename=var2pharm-0.0.1-py3-none-any.whl size=138299 sha256=33853ae13e04ff865a9d1dee70d6805321466dc3185143e218d8784b127aedbc
2020-07-14T12:56:16,515   Stored in directory: /tmp/pip-ephem-wheel-cache-ri4q21e4/wheels/6f/9f/fb/baa70c9ef9a6dd93001761aec352c997a4b0cee1393ab744bd
2020-07-14T12:56:16,519 Successfully built var2pharm
2020-07-14T12:56:16,549 Removed build tracker: '/tmp/pip-req-tracker-0znylnez'