2020-07-16T13:57:52,354 Created temporary directory: /tmp/pip-ephem-wheel-cache-8vuteicd
2020-07-16T13:57:52,359 Created temporary directory: /tmp/pip-req-tracker-57ll8gqi
2020-07-16T13:57:52,360 Initialized build tracking at /tmp/pip-req-tracker-57ll8gqi
2020-07-16T13:57:52,362 Created build tracker: /tmp/pip-req-tracker-57ll8gqi
2020-07-16T13:57:52,363 Entered build tracker: /tmp/pip-req-tracker-57ll8gqi
2020-07-16T13:57:52,364 Created temporary directory: /tmp/pip-wheel-h9uv52av
2020-07-16T13:57:52,383 1 location(s) to search for versions of faps:
2020-07-16T13:57:52,383 * https://pypi.org/simple/faps/
2020-07-16T13:57:52,384 Fetching project page and analyzing links: https://pypi.org/simple/faps/
2020-07-16T13:57:52,386 Getting page https://pypi.org/simple/faps/
2020-07-16T13:57:52,391 Found index url https://pypi.org/simple
2020-07-16T13:57:52,749   Found link https://files.pythonhosted.org/packages/e1/4e/b674e2ba31cac8029b974a3947b9f522cbff50ef441de9049abdee41c6f7/faps-1.1.0.tar.gz#sha256=bb40c6cd9529d7bbedd31858fe7cf7f690479fa685008e7a0567e7bf6048d8f5 (from https://pypi.org/simple/faps/), version: 1.1.0
2020-07-16T13:57:52,750   Found link https://files.pythonhosted.org/packages/9a/bb/c8b5e3ccbed219630989976f3a49b3ddb28a5b44f00b0b73c9e3108ee57f/faps-1.1.1.tar.gz#sha256=6dccb9f61093dca1fa6ead0b54f55a918186410123834c3c35ca5464c30c34c1 (from https://pypi.org/simple/faps/), version: 1.1.1
2020-07-16T13:57:52,751   Found link https://files.pythonhosted.org/packages/af/86/bd152f8a4386b664eb9d53c307c8f3c5ed03c0fcb425988c744e79bb3beb/faps-1.2.0.tar.gz#sha256=5f1e0e8531859c70cea24391f26230461b634de1b11d33422ce175840f2d9377 (from https://pypi.org/simple/faps/), version: 1.2.0
2020-07-16T13:57:52,752   Found link https://files.pythonhosted.org/packages/a3/45/66513f159998725a6934d455bcc0beb86f7f650372a86d7ced9e496ea916/faps-1.2.1.tar.gz#sha256=152cfbffec9301d922a4ac2e4ac3aae76cf8e1c0093ba2fff4211a9eaee9c94f (from https://pypi.org/simple/faps/), version: 1.2.1
2020-07-16T13:57:52,754   Found link https://files.pythonhosted.org/packages/cc/f6/b7bd85b4d74433eca7281fd3910fdd41ff10164d5c5723e9b2714c28b723/faps-1.2.3.tar.gz#sha256=5c0daefac441f12d3b3cb9bca5a868e409a8bdbe8f60230937e783f5f07874b1 (from https://pypi.org/simple/faps/), version: 1.2.3
2020-07-16T13:57:52,755   Found link https://files.pythonhosted.org/packages/5d/24/3b9746abfa526e45635cb0012f813e32bd914407d913473cf35631545428/faps-1.2.4.tar.gz#sha256=92e65046d96ea29872e7187b148ad8c116b581b41ff82c42acc52bc62e3f6053 (from https://pypi.org/simple/faps/), version: 1.2.4
2020-07-16T13:57:52,756   Found link https://files.pythonhosted.org/packages/d7/5c/c336e73f6861653bec8f80913b42bb213a0ad0e62b4152f6fedda0da33a6/faps-1.2.5.tar.gz#sha256=21ed7fc8d500ede35dcd8c4bb4db6bfc54f5ee9420be23cb5cfd3ea893d48d36 (from https://pypi.org/simple/faps/), version: 1.2.5
2020-07-16T13:57:52,757   Found link https://files.pythonhosted.org/packages/c1/eb/5ccddbe34ffab340c64e702a0b85b57cf8fbd2f703602b74c2cb17f8503e/faps-1.3.0.tar.gz#sha256=b4252dd178953347c74c49d7745b3d8ae958185dbc8408907d5cd1d069eacdef (from https://pypi.org/simple/faps/), version: 1.3.0
2020-07-16T13:57:52,759   Found link https://files.pythonhosted.org/packages/f2/45/f48fdd471db9f6aeac8764fcdac969488d9b2db3c7031382ea1b429ff402/faps-2.0.0.tar.gz#sha256=b2a2e9ec637d34907fc1540c9433bf7495eb0cbd8c557e28ef3477c393de9064 (from https://pypi.org/simple/faps/), version: 2.0.0
2020-07-16T13:57:52,760   Found link https://files.pythonhosted.org/packages/63/38/b35e2b5c10175f5296f83b307bab17c477b25d404a88f7d25240380fee4c/faps-2.1.0.tar.gz#sha256=2b7f23c502409c3251bb49de7847642e8f21b4f9ddc5034e982072552ef4a374 (from https://pypi.org/simple/faps/), version: 2.1.0
2020-07-16T13:57:52,761   Found link https://files.pythonhosted.org/packages/99/29/eb781e13af9e2c1e08593afe16f668462915b379dc4b7854eee384c5daeb/faps-2.2.1.tar.gz#sha256=66040c13e95a41f0cf153cf9ca905fc6861ff0e97090f49f24575173e2319411 (from https://pypi.org/simple/faps/), version: 2.2.1
2020-07-16T13:57:52,762   Found link https://files.pythonhosted.org/packages/04/e0/982dc62003c768a37d27ef17acf62e0a9ee6a7719279fe43f9d5407fd2ad/faps-2.3.0.tar.gz#sha256=a2c8101e0cecc1b5d47581d1009f2153db57ac79a0e2afb876acab6ad42c2a9d (from https://pypi.org/simple/faps/), version: 2.3.0
2020-07-16T13:57:52,763   Found link https://files.pythonhosted.org/packages/d4/02/4ec46ef1f168b5541b52e1310d99a36b6bacc3bfb12e888036bc7913789d/faps-2.4.0.tar.gz#sha256=7ed94c98e3d05ed5c413b2297b3563cde9dc47060eb65f835de1708ee7968469 (from https://pypi.org/simple/faps/), version: 2.4.0
2020-07-16T13:57:52,765   Found link https://files.pythonhosted.org/packages/8a/76/38c8eba324f082a4a91ec3e9d1d09bb7079ca4d4c12e674c492c1bc64242/faps-2.5.0.tar.gz#sha256=d8a40e6a46f7f7c6492abca3741d0a7d54dfaade3a52712a3ca19a3380619bf6 (from https://pypi.org/simple/faps/), version: 2.5.0
2020-07-16T13:57:52,766   Found link https://files.pythonhosted.org/packages/12/82/ec68f0bc63422918a15f1facc6b0fb19a68462705b406865b587a65795f8/faps-2.5.1.tar.gz#sha256=4dd4217a34d93feba9f9da448edb030baed7d0042b4642bf92b900c2a831ba20 (from https://pypi.org/simple/faps/), version: 2.5.1
2020-07-16T13:57:52,788 Given no hashes to check 1 links for project 'faps': discarding no candidates
2020-07-16T13:57:52,790 Using version 2.5.1 (newest of versions: 2.5.1)
2020-07-16T13:57:52,797 Collecting faps==2.5.1
2020-07-16T13:57:52,802   Created temporary directory: /tmp/pip-unpack-5un2ti4w
2020-07-16T13:57:53,064   Downloading faps-2.5.1.tar.gz (53 kB)
2020-07-16T13:57:53,344   Added faps==2.5.1 from https://files.pythonhosted.org/packages/12/82/ec68f0bc63422918a15f1facc6b0fb19a68462705b406865b587a65795f8/faps-2.5.1.tar.gz#sha256=4dd4217a34d93feba9f9da448edb030baed7d0042b4642bf92b900c2a831ba20 to build tracker '/tmp/pip-req-tracker-57ll8gqi'
2020-07-16T13:57:53,346     Running setup.py (path:/tmp/pip-wheel-h9uv52av/faps/setup.py) egg_info for package faps
2020-07-16T13:57:53,347     Created temporary directory: /tmp/pip-pip-egg-info-eqxo0w2h
2020-07-16T13:57:53,349     Running command python setup.py egg_info
2020-07-16T13:57:55,809     running egg_info
2020-07-16T13:57:55,814     creating /tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info
2020-07-16T13:57:55,817     writing top-level names to /tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/top_level.txt
2020-07-16T13:57:55,820     writing dependency_links to /tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/dependency_links.txt
2020-07-16T13:57:55,823     writing /tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/PKG-INFO
2020-07-16T13:57:55,829     writing requirements to /tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/requires.txt
2020-07-16T13:57:55,832     writing manifest file '/tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/SOURCES.txt'
2020-07-16T13:57:56,206     reading manifest file '/tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/SOURCES.txt'
2020-07-16T13:57:56,217     writing manifest file '/tmp/pip-pip-egg-info-eqxo0w2h/faps.egg-info/SOURCES.txt'
2020-07-16T13:57:56,362   Source in /tmp/pip-wheel-h9uv52av/faps has version 2.5.1, which satisfies requirement faps==2.5.1 from https://files.pythonhosted.org/packages/12/82/ec68f0bc63422918a15f1facc6b0fb19a68462705b406865b587a65795f8/faps-2.5.1.tar.gz#sha256=4dd4217a34d93feba9f9da448edb030baed7d0042b4642bf92b900c2a831ba20
2020-07-16T13:57:56,364   Removed faps==2.5.1 from https://files.pythonhosted.org/packages/12/82/ec68f0bc63422918a15f1facc6b0fb19a68462705b406865b587a65795f8/faps-2.5.1.tar.gz#sha256=4dd4217a34d93feba9f9da448edb030baed7d0042b4642bf92b900c2a831ba20 from build tracker '/tmp/pip-req-tracker-57ll8gqi'
2020-07-16T13:57:56,367 Building wheels for collected packages: faps
2020-07-16T13:57:56,377   Created temporary directory: /tmp/pip-wheel-hga9buk_
2020-07-16T13:57:56,378   Building wheel for faps (setup.py): started
2020-07-16T13:57:56,379   Destination directory: /tmp/pip-wheel-hga9buk_
2020-07-16T13:57:56,379   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-h9uv52av/faps/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-h9uv52av/faps/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hga9buk_
2020-07-16T13:57:58,847   running bdist_wheel
2020-07-16T13:57:58,864   running build
2020-07-16T13:57:58,865   running build_py
2020-07-16T13:57:59,218   creating build
2020-07-16T13:57:59,219   creating build/lib
2020-07-16T13:57:59,221   creating build/lib/faps
2020-07-16T13:57:59,223   copying faps/matingEvents.py -> build/lib/faps
2020-07-16T13:57:59,229   copying faps/mating_summary.py -> build/lib/faps
2020-07-16T13:57:59,233   copying faps/convert_genotypes.py -> build/lib/faps
2020-07-16T13:57:59,239   copying faps/paternity_list.py -> build/lib/faps
2020-07-16T13:57:59,244   copying faps/export_to_colony.py -> build/lib/faps
2020-07-16T13:57:59,251   copying faps/calculate_geno_probs.py -> build/lib/faps
2020-07-16T13:57:59,257   copying faps/mating_events.py -> build/lib/faps
2020-07-16T13:57:59,264   copying faps/squash_siblings.py -> build/lib/faps
2020-07-16T13:57:59,269   copying faps/do_clustering.py -> build/lib/faps
2020-07-16T13:57:59,275   copying faps/make_power.py -> build/lib/faps
2020-07-16T13:57:59,283   copying faps/make_parents.py -> build/lib/faps
2020-07-16T13:57:59,288   copying faps/calculate_SNP_calls.py -> build/lib/faps
2020-07-16T13:57:59,294   copying faps/accuracy_paternity.py -> build/lib/faps
2020-07-16T13:57:59,300   copying faps/read_genotypes.py -> build/lib/faps
2020-07-16T13:57:59,306   copying faps/read_paternity_array.py -> build/lib/faps
2020-07-16T13:57:59,312   copying faps/sibship_partitions.py -> build/lib/faps
2020-07-16T13:57:59,318   copying faps/sibshipCluster.py -> build/lib/faps
2020-07-16T13:57:59,326   copying faps/draw_fathers.py -> build/lib/faps
2020-07-16T13:57:59,333   copying faps/unique_rows.py -> build/lib/faps
2020-07-16T13:57:59,338   copying faps/make_sibships.py -> build/lib/faps
2020-07-16T13:57:59,344   copying faps/transition_probability.py -> build/lib/faps
2020-07-16T13:57:59,349   copying faps/sibship_clustering.py -> build/lib/faps
2020-07-16T13:57:59,356   copying faps/paternity_array.py -> build/lib/faps
2020-07-16T13:57:59,363   copying faps/pairwise_lik_fullsibs.py -> build/lib/faps
2020-07-16T13:57:59,369   copying faps/partition_accuracy.py -> build/lib/faps
2020-07-16T13:57:59,374   copying faps/paternityArray.py -> build/lib/faps
2020-07-16T13:57:59,382   copying faps/effective_nloci.py -> build/lib/faps
2020-07-16T13:57:59,387   copying faps/lik_partition.py -> build/lib/faps
2020-07-16T13:57:59,393   copying faps/alogsumexp.py -> build/lib/faps
2020-07-16T13:57:59,398   copying faps/pr_transition.py -> build/lib/faps
2020-07-16T13:57:59,404   copying faps/genotypeArray.py -> build/lib/faps
2020-07-16T13:57:59,411   copying faps/sibship_transitions.py -> build/lib/faps
2020-07-16T13:57:59,417   copying faps/incompatibilities.py -> build/lib/faps
2020-07-16T13:57:59,422   copying faps/__init__.py -> build/lib/faps
2020-07-16T13:57:59,428   copying faps/pr_unsampled.py -> build/lib/faps
2020-07-16T13:57:59,433   copying faps/summarise_sires.py -> build/lib/faps
2020-07-16T13:57:59,439   copying faps/lik_unsampled_fathers.py -> build/lib/faps
2020-07-16T13:57:59,443   copying faps/parent_index.py -> build/lib/faps
2020-07-16T13:57:59,447   copying faps/make_generation.py -> build/lib/faps
2020-07-16T13:57:59,452   copying faps/sibship_paternity.py -> build/lib/faps
2020-07-16T13:57:59,457   copying faps/lik_sampled_fathers.py -> build/lib/faps
2020-07-16T13:57:59,462   copying faps/relation_matrix.py -> build/lib/faps
2020-07-16T13:57:59,468   copying faps/make_offspring.py -> build/lib/faps
2020-07-16T13:57:59,472   running egg_info
2020-07-16T13:57:59,503   creating faps.egg-info
2020-07-16T13:57:59,505   writing dependency_links to faps.egg-info/dependency_links.txt
2020-07-16T13:57:59,508   writing requirements to faps.egg-info/requires.txt
2020-07-16T13:57:59,510   writing top-level names to faps.egg-info/top_level.txt
2020-07-16T13:57:59,512   writing faps.egg-info/PKG-INFO
2020-07-16T13:57:59,520   writing manifest file 'faps.egg-info/SOURCES.txt'
2020-07-16T13:57:59,532   reading manifest file 'faps.egg-info/SOURCES.txt'
2020-07-16T13:57:59,542   writing manifest file 'faps.egg-info/SOURCES.txt'
2020-07-16T13:57:59,561   installing to build/bdist.linux-armv7l/wheel
2020-07-16T13:57:59,562   running install
2020-07-16T13:57:59,564   running install_lib
2020-07-16T13:57:59,572   creating build/bdist.linux-armv7l
2020-07-16T13:57:59,573   creating build/bdist.linux-armv7l/wheel
2020-07-16T13:57:59,578   creating build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,580   copying build/lib/faps/matingEvents.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,585   copying build/lib/faps/mating_summary.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,590   copying build/lib/faps/convert_genotypes.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,594   copying build/lib/faps/paternity_list.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,598   copying build/lib/faps/export_to_colony.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,604   copying build/lib/faps/calculate_geno_probs.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,609   copying build/lib/faps/mating_events.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,615   copying build/lib/faps/squash_siblings.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,621   copying build/lib/faps/do_clustering.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,627   copying build/lib/faps/make_power.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,634   copying build/lib/faps/make_parents.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,640   copying build/lib/faps/calculate_SNP_calls.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,645   copying build/lib/faps/accuracy_paternity.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,651   copying build/lib/faps/read_genotypes.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,657   copying build/lib/faps/read_paternity_array.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,662   copying build/lib/faps/sibship_partitions.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,668   copying build/lib/faps/sibshipCluster.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,676   copying build/lib/faps/draw_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,682   copying build/lib/faps/unique_rows.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,687   copying build/lib/faps/make_sibships.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,693   copying build/lib/faps/transition_probability.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,698   copying build/lib/faps/sibship_clustering.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,704   copying build/lib/faps/paternity_array.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,711   copying build/lib/faps/pairwise_lik_fullsibs.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,717   copying build/lib/faps/partition_accuracy.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,722   copying build/lib/faps/paternityArray.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,730   copying build/lib/faps/effective_nloci.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,735   copying build/lib/faps/lik_partition.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,741   copying build/lib/faps/alogsumexp.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,746   copying build/lib/faps/pr_transition.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,752   copying build/lib/faps/genotypeArray.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,759   copying build/lib/faps/sibship_transitions.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,766   copying build/lib/faps/incompatibilities.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,771   copying build/lib/faps/__init__.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,777   copying build/lib/faps/pr_unsampled.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,782   copying build/lib/faps/summarise_sires.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,788   copying build/lib/faps/lik_unsampled_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,793   copying build/lib/faps/parent_index.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,798   copying build/lib/faps/make_generation.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,805   copying build/lib/faps/sibship_paternity.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,811   copying build/lib/faps/lik_sampled_fathers.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,817   copying build/lib/faps/relation_matrix.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,822   copying build/lib/faps/make_offspring.py -> build/bdist.linux-armv7l/wheel/faps
2020-07-16T13:57:59,826   running install_egg_info
2020-07-16T13:57:59,851   Copying faps.egg-info to build/bdist.linux-armv7l/wheel/faps-2.5.1-py3.5.egg-info
2020-07-16T13:57:59,879   running install_scripts
2020-07-16T13:58:00,052   creating build/bdist.linux-armv7l/wheel/faps-2.5.1.dist-info/WHEEL
2020-07-16T13:58:00,450   Building wheel for faps (setup.py): finished with status 'done'
2020-07-16T13:58:00,456   Created wheel for faps: filename=faps-2.5.1-py3-none-any.whl size=79095 sha256=c67c08c404d638ddeeb6ba48d3b8c22677bfdc0819eba290fa92178e7ccf607c
2020-07-16T13:58:00,457   Stored in directory: /tmp/pip-ephem-wheel-cache-8vuteicd/wheels/6b/00/84/437f65384499c4cd9760b94a77af254c302a283eb73fca72f2
2020-07-16T13:58:00,460 Successfully built faps
2020-07-16T13:58:00,481 Removed build tracker: '/tmp/pip-req-tracker-57ll8gqi'