2020-07-16T21:54:41,748 Created temporary directory: /tmp/pip-ephem-wheel-cache-gm3c2ym7
2020-07-16T21:54:41,752 Created temporary directory: /tmp/pip-req-tracker-fz54azv9
2020-07-16T21:54:41,753 Initialized build tracking at /tmp/pip-req-tracker-fz54azv9
2020-07-16T21:54:41,756 Created build tracker: /tmp/pip-req-tracker-fz54azv9
2020-07-16T21:54:41,756 Entered build tracker: /tmp/pip-req-tracker-fz54azv9
2020-07-16T21:54:41,758 Created temporary directory: /tmp/pip-wheel-qt45rbhc
2020-07-16T21:54:41,777 1 location(s) to search for versions of neoepiscope:
2020-07-16T21:54:41,777 * https://pypi.org/simple/neoepiscope/
2020-07-16T21:54:41,778 Fetching project page and analyzing links: https://pypi.org/simple/neoepiscope/
2020-07-16T21:54:41,781 Getting page https://pypi.org/simple/neoepiscope/
2020-07-16T21:54:41,785 Found index url https://pypi.org/simple
2020-07-16T21:54:42,185   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/b4/ba/522219aa8b8352160f6ba2ca61097738afa2c6920b9a7bbd4da50fcc8da0/neoepiscope-0.2.0-py2-none-any.whl#sha256=55346d80fe30aa74364285c46bc69a3afae1a06a979388b831f697672874c722 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,186   Found link https://files.pythonhosted.org/packages/3e/8c/95683b457bffe28795c95717a5ccaf84553b6dd882f4955b0a79c6c00f5f/neoepiscope-0.2.0.tar.gz#sha256=b76ee238ba61be0809f732b35982715bbbc52ced24581f28f618b1646340ae0c (from https://pypi.org/simple/neoepiscope/), version: 0.2.0
2020-07-16T21:54:42,187   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/20/b1/e4c1c036f951cfa7751e0b28cd371354baf73abef4f1cdae96f7a8b5ab63/neoepiscope-0.2.1-py3-none-any.whl#sha256=bb5ec6fd4e55f07b36c92973a37ece0d2679ef7e19b492e6adb5928104a9a474 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,188   Found link https://files.pythonhosted.org/packages/d4/65/4109ba8cd2a59b73dbf5264eb5581e2e7a3c65dd1ca06276baf27d220a71/neoepiscope-0.2.1.tar.gz#sha256=cd0ad7717b6536aea87753f66eb066f6d42eb23656b04fb8d5df2e4ebe68eb2f (from https://pypi.org/simple/neoepiscope/), version: 0.2.1
2020-07-16T21:54:42,189   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/b4/d5/07896094a43723acde6c2187030388f4c3bc06c718e17e2b4daa4a450de8/neoepiscope-0.3.0-py3-none-any.whl#sha256=59a923c59d94d2888611a877773b09686d65eaef84aefd75e39a920a4164193c (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,190   Found link https://files.pythonhosted.org/packages/09/9f/5bc3abded3c9d778cb938f12f65674dfc8feb2776b285d6a96504da6088e/neoepiscope-0.3.0.tar.gz#sha256=24a976a582e9cde446429da56efd0554509e2654a8ee5c259eea7c7d6251c810 (from https://pypi.org/simple/neoepiscope/), version: 0.3.0
2020-07-16T21:54:42,197   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/0c/9a/116f487b911c68feee05aff085141cd055ce942f7a85777e1f5723b537c7/neoepiscope-0.3.1-py3-none-any.whl#sha256=c3ef199ced1ebc76a603970b1dc24124f82e130dcd3d639fb1857289011577b7 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,199   Found link https://files.pythonhosted.org/packages/90/ce/4c2b40bd4d52c819514c858f6a34aa5e71cd4ec19cb5f61f5ef004410ad6/neoepiscope-0.3.2.tar.gz#sha256=a7522d7d6312d3cf52efcb5fee940cc2e922f05b9684816d6173f22b606f377a (from https://pypi.org/simple/neoepiscope/), version: 0.3.2
2020-07-16T21:54:42,200   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/73/20/96291bac14ab814e35c6f0174bebb13f022bffde78d329a2d285c711f54a/neoepiscope-0.3.3-py3-none-any.whl#sha256=6c1327b7a7312cd51e80a9d3b71a57159bf269a6fc68fbd7ae84867900df4bf5 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,201   Found link https://files.pythonhosted.org/packages/f3/65/c4c3a874622c26b2d2dd21fae7e69c58097c2c0a26eea31741756c2fbe91/neoepiscope-0.3.3.tar.gz#sha256=0657ecfafbcbbd73603c3e568d12ebff2cac6549801f8532e515b56669007d73 (from https://pypi.org/simple/neoepiscope/), version: 0.3.3
2020-07-16T21:54:42,202   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/16/8b/6b8821dc703180ad381576443ac70437e727f15f130af56d9901531de7ea/neoepiscope-0.3.5-py3-none-any.whl#sha256=08d23331f4bdd3fe3fd84a8a234b2c0107d67f23986042ae1e626910263d31dd (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,203   Found link https://files.pythonhosted.org/packages/2f/c7/4966ec20b2a6585079e779f04c8f27b45fb87396831b3e307217e648a31c/neoepiscope-0.3.5.tar.gz#sha256=80b001371258ec357c916d6e62a3d214bd65c3f02b10bd8c062f6df80709e89c (from https://pypi.org/simple/neoepiscope/), version: 0.3.5
2020-07-16T21:54:42,204   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/84/7f/4867f0c45581629b5f21ba65ec6ef3d01682b4c0b613f72fc193e1ec9cb0/neoepiscope-0.3.6-py3-none-any.whl#sha256=26579db85b8c06c457931213394db1c3b8c100c18ee09a9cec3c131ff9e6f8b1 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,205   Found link https://files.pythonhosted.org/packages/e2/4e/803495fc57d35325b8964c8952934ba1a983b622b91f14576560d2e46efd/neoepiscope-0.3.6.tar.gz#sha256=9113e2bc28ae009300078294d87e2ebb3fa78d2acf3af037a9bdc1f9692848a4 (from https://pypi.org/simple/neoepiscope/), version: 0.3.6
2020-07-16T21:54:42,206   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/af/46/21b4c4aec657bd124c7c4615862856bc84dc7c5e02a9dc56ec7d5686a6c9/neoepiscope-0.3.7-py3-none-any.whl#sha256=c87e3ac8ae2cb4f8180638ae9ddd840f18ca71fa2f592f636149ae689ce6c738 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,207   Found link https://files.pythonhosted.org/packages/b5/fe/19ec9eca338f513a4bea4e3fe902328d1924e2262aa497b1d55f3186af6f/neoepiscope-0.3.7.tar.gz#sha256=8a1a408003badfd74d7b4e98e00ce002365fe11e0310a0ed98976f2ac19e6c8f (from https://pypi.org/simple/neoepiscope/), version: 0.3.7
2020-07-16T21:54:42,208   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/89/e4/bddb6cddefdcd2ae088978c92f88824919399021c76f07bd071834ce7860/neoepiscope-0.3.8-py3-none-any.whl#sha256=e6deed715d295cbac717251368b2e1f89a51d7a7dc4a51fe921dffbe2d396f8b (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,209   Found link https://files.pythonhosted.org/packages/2a/dc/e07b6fc22dfd00a4073e2a3131cf6d8b695c0c0700868967259583124e36/neoepiscope-0.3.8.tar.gz#sha256=75841da0a9bf326f01b9e00313b59ccaad014e2cd1d19d17c70cb724f52f7cbd (from https://pypi.org/simple/neoepiscope/), version: 0.3.8
2020-07-16T21:54:42,210   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/76/19/102b36f7c46944f9c32f241371d688c9931c6c10a13e71479464f7cd0423/neoepiscope-0.3.9-py3-none-any.whl#sha256=a164543081e91824dbabdbece07e89480fcdf7909dda956d16ec9754669a55c8 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,211   Found link https://files.pythonhosted.org/packages/2d/7b/7e86766ea6d4c430244d2ea8f4744fb48b41e1ca9ce744c1405277f0b125/neoepiscope-0.3.9.tar.gz#sha256=9a938363a1906b02a2b8e5747147c22e1653275cd0dbd4ccda223d7e9955b19c (from https://pypi.org/simple/neoepiscope/), version: 0.3.9
2020-07-16T21:54:42,212   Skipping link: No binaries permitted for neoepiscope: https://files.pythonhosted.org/packages/cc/b6/da7bd253985b26a4c6d35d6726bd79d464fd452332b98398a19fac52d56e/neoepiscope-0.4.0-py3-none-any.whl#sha256=ef22f79ce1e217526036861725fe051af511a0c03cca2a1d70e875bc6c5b4838 (from https://pypi.org/simple/neoepiscope/)
2020-07-16T21:54:42,213   Found link https://files.pythonhosted.org/packages/cb/c2/d7b12208d8a52a3deb2bb6a21abafd26e08c78e161e2fca27065e46fcd44/neoepiscope-0.4.0.tar.gz#sha256=0bf3f1953bbb8c9c70f56326b9785453bb7edc365a436f65614ac4a576829c02 (from https://pypi.org/simple/neoepiscope/), version: 0.4.0
2020-07-16T21:54:42,228 Given no hashes to check 1 links for project 'neoepiscope': discarding no candidates
2020-07-16T21:54:42,230 Using version 0.4.0 (newest of versions: 0.4.0)
2020-07-16T21:54:42,237 Collecting neoepiscope==0.4.0
2020-07-16T21:54:42,242   Created temporary directory: /tmp/pip-unpack-9cq_gj2y
2020-07-16T21:54:43,287   Downloading neoepiscope-0.4.0.tar.gz (25.2 MB)
2020-07-16T21:54:57,748   Added neoepiscope==0.4.0 from https://files.pythonhosted.org/packages/cb/c2/d7b12208d8a52a3deb2bb6a21abafd26e08c78e161e2fca27065e46fcd44/neoepiscope-0.4.0.tar.gz#sha256=0bf3f1953bbb8c9c70f56326b9785453bb7edc365a436f65614ac4a576829c02 to build tracker '/tmp/pip-req-tracker-fz54azv9'
2020-07-16T21:54:57,751     Running setup.py (path:/tmp/pip-wheel-qt45rbhc/neoepiscope/setup.py) egg_info for package neoepiscope
2020-07-16T21:54:57,754     Created temporary directory: /tmp/pip-pip-egg-info-sty2dgjc
2020-07-16T21:54:57,755     Running command python setup.py egg_info
2020-07-16T21:55:00,268     running egg_info
2020-07-16T21:55:00,274     creating /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info
2020-07-16T21:55:00,277     writing dependency_links to /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/dependency_links.txt
2020-07-16T21:55:00,281     writing /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/PKG-INFO
2020-07-16T21:55:00,287     writing top-level names to /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/top_level.txt
2020-07-16T21:55:00,291     writing entry points to /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/entry_points.txt
2020-07-16T21:55:00,294     writing requirements to /tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/requires.txt
2020-07-16T21:55:00,299     writing manifest file '/tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/SOURCES.txt'
2020-07-16T21:55:00,665     reading manifest file '/tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/SOURCES.txt'
2020-07-16T21:55:00,669     reading manifest template 'MANIFEST.in'
2020-07-16T21:55:00,681     writing manifest file '/tmp/pip-pip-egg-info-sty2dgjc/neoepiscope.egg-info/SOURCES.txt'
2020-07-16T21:55:00,829   Source in /tmp/pip-wheel-qt45rbhc/neoepiscope has version 0.4.0, which satisfies requirement neoepiscope==0.4.0 from https://files.pythonhosted.org/packages/cb/c2/d7b12208d8a52a3deb2bb6a21abafd26e08c78e161e2fca27065e46fcd44/neoepiscope-0.4.0.tar.gz#sha256=0bf3f1953bbb8c9c70f56326b9785453bb7edc365a436f65614ac4a576829c02
2020-07-16T21:55:00,831   Removed neoepiscope==0.4.0 from https://files.pythonhosted.org/packages/cb/c2/d7b12208d8a52a3deb2bb6a21abafd26e08c78e161e2fca27065e46fcd44/neoepiscope-0.4.0.tar.gz#sha256=0bf3f1953bbb8c9c70f56326b9785453bb7edc365a436f65614ac4a576829c02 from build tracker '/tmp/pip-req-tracker-fz54azv9'
2020-07-16T21:55:00,835 Building wheels for collected packages: neoepiscope
2020-07-16T21:55:00,845   Created temporary directory: /tmp/pip-wheel-__7ngjjf
2020-07-16T21:55:00,846   Building wheel for neoepiscope (setup.py): started
2020-07-16T21:55:00,847   Destination directory: /tmp/pip-wheel-__7ngjjf
2020-07-16T21:55:00,847   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qt45rbhc/neoepiscope/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qt45rbhc/neoepiscope/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-__7ngjjf
2020-07-16T21:55:03,456   running bdist_wheel
2020-07-16T21:55:03,468   running build
2020-07-16T21:55:03,469   running build_py
2020-07-16T21:55:03,811   creating build
2020-07-16T21:55:03,812   creating build/lib
2020-07-16T21:55:03,813   creating build/lib/neoepiscope
2020-07-16T21:55:03,816   copying neoepiscope/transcript_expression.py -> build/lib/neoepiscope
2020-07-16T21:55:03,822   copying neoepiscope/__main__.py -> build/lib/neoepiscope
2020-07-16T21:55:03,825   copying neoepiscope/download.py -> build/lib/neoepiscope
2020-07-16T21:55:03,834   copying neoepiscope/binding_scores.py -> build/lib/neoepiscope
2020-07-16T21:55:03,849   copying neoepiscope/paths.py -> build/lib/neoepiscope
2020-07-16T21:55:03,854   copying neoepiscope/bowtie_index.py -> build/lib/neoepiscope
2020-07-16T21:55:03,862   copying neoepiscope/file_processing.py -> build/lib/neoepiscope
2020-07-16T21:55:03,871   copying neoepiscope/transcript.py -> build/lib/neoepiscope
2020-07-16T21:55:03,891   copying neoepiscope/__init__.py -> build/lib/neoepiscope
2020-07-16T21:55:03,898   copying neoepiscope/version.py -> build/lib/neoepiscope
2020-07-16T21:55:03,901   running egg_info
2020-07-16T21:55:03,930   writing neoepiscope.egg-info/PKG-INFO
2020-07-16T21:55:03,934   writing top-level names to neoepiscope.egg-info/top_level.txt
2020-07-16T21:55:03,936   writing requirements to neoepiscope.egg-info/requires.txt
2020-07-16T21:55:03,939   writing dependency_links to neoepiscope.egg-info/dependency_links.txt
2020-07-16T21:55:03,942   writing entry points to neoepiscope.egg-info/entry_points.txt
2020-07-16T21:55:03,952   reading manifest file 'neoepiscope.egg-info/SOURCES.txt'
2020-07-16T21:55:03,957   reading manifest template 'MANIFEST.in'
2020-07-16T21:55:03,969   writing manifest file 'neoepiscope.egg-info/SOURCES.txt'
2020-07-16T21:55:03,977   copying neoepiscope/PSSMHCpan1Sizes.pickle -> build/lib/neoepiscope
2020-07-16T21:55:03,982   copying neoepiscope/ambiguousEpitopeID.pickle -> build/lib/neoepiscope
2020-07-16T21:55:03,990   copying neoepiscope/availableAlleles.pickle -> build/lib/neoepiscope
2020-07-16T21:55:04,168   copying neoepiscope/epitopeID.pickle -> build/lib/neoepiscope
2020-07-16T21:55:08,544   installing to build/bdist.linux-armv7l/wheel
2020-07-16T21:55:08,545   running install
2020-07-16T21:55:08,547   running install_lib
2020-07-16T21:55:08,558   creating build/bdist.linux-armv7l
2020-07-16T21:55:08,559   creating build/bdist.linux-armv7l/wheel
2020-07-16T21:55:08,563   creating build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,566   copying build/lib/neoepiscope/transcript_expression.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,572   copying build/lib/neoepiscope/PSSMHCpan1Sizes.pickle -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,577   copying build/lib/neoepiscope/availableAlleles.pickle -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,751   copying build/lib/neoepiscope/__main__.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,755   copying build/lib/neoepiscope/ambiguousEpitopeID.pickle -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:08,763   copying build/lib/neoepiscope/epitopeID.pickle -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,167   copying build/lib/neoepiscope/download.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,176   copying build/lib/neoepiscope/binding_scores.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,191   copying build/lib/neoepiscope/paths.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,199   copying build/lib/neoepiscope/bowtie_index.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,208   copying build/lib/neoepiscope/file_processing.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,220   copying build/lib/neoepiscope/transcript.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,242   copying build/lib/neoepiscope/__init__.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,251   copying build/lib/neoepiscope/version.py -> build/bdist.linux-armv7l/wheel/neoepiscope
2020-07-16T21:55:13,254   running install_egg_info
2020-07-16T21:55:13,272   Copying neoepiscope.egg-info to build/bdist.linux-armv7l/wheel/neoepiscope-0.4.0-py3.5.egg-info
2020-07-16T21:55:13,306   running install_scripts
2020-07-16T21:55:13,506   creating build/bdist.linux-armv7l/wheel/neoepiscope-0.4.0.dist-info/WHEEL
2020-07-16T21:55:38,960   Building wheel for neoepiscope (setup.py): finished with status 'done'
2020-07-16T21:55:39,371   Created wheel for neoepiscope: filename=neoepiscope-0.4.0-py3-none-any.whl size=25054750 sha256=fd3cab468384b5b3285d7fe79ff5f27ee092670bb6e3a3334cf5b5eaf03b9d67
2020-07-16T21:55:39,372   Stored in directory: /tmp/pip-ephem-wheel-cache-gm3c2ym7/wheels/83/82/aa/80b68c14e434b02f893229105e7aa5c2c67ccb4f7c7bbd54cd
2020-07-16T21:55:39,376 Successfully built neoepiscope
2020-07-16T21:55:43,738 Removed build tracker: '/tmp/pip-req-tracker-fz54azv9'