2020-07-19T10:15:39,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-s6ubv5zb 2020-07-19T10:15:39,927 Created temporary directory: /tmp/pip-req-tracker-4p7cl75u 2020-07-19T10:15:39,928 Initialized build tracking at /tmp/pip-req-tracker-4p7cl75u 2020-07-19T10:15:39,928 Created build tracker: /tmp/pip-req-tracker-4p7cl75u 2020-07-19T10:15:39,929 Entered build tracker: /tmp/pip-req-tracker-4p7cl75u 2020-07-19T10:15:39,930 Created temporary directory: /tmp/pip-wheel-gtpgfmun 2020-07-19T10:15:39,947 1 location(s) to search for versions of sequana-denovo: 2020-07-19T10:15:39,947 * https://pypi.org/simple/sequana-denovo/ 2020-07-19T10:15:39,948 Fetching project page and analyzing links: https://pypi.org/simple/sequana-denovo/ 2020-07-19T10:15:39,949 Getting page https://pypi.org/simple/sequana-denovo/ 2020-07-19T10:15:39,951 Found index url https://pypi.org/simple 2020-07-19T10:15:40,158 Found link https://files.pythonhosted.org/packages/66/e0/ee445a2b08a8a5d73df35ac3f2ee93cdaee93097e7439c164f8767f96e8d/sequana_denovo-0.8.0.tar.gz#sha256=903aa0df8d41b9c27c2ddc14fbb96a50605c707760ff32f599da9f793ccfed0e (from https://pypi.org/simple/sequana-denovo/), version: 0.8.0 2020-07-19T10:15:40,159 Found link https://files.pythonhosted.org/packages/2a/ab/4ddd7a47f446dcc07f1a87351913da87df5187536f168ffb10408b867af6/sequana_denovo-0.8.1.tar.gz#sha256=9c87ebf49bc22c9308eadf934e8a01c4c30bccfd1ea62850a2e767ed5de6acf0 (from https://pypi.org/simple/sequana-denovo/), version: 0.8.1 2020-07-19T10:15:40,160 Found link https://files.pythonhosted.org/packages/b1/72/2785e80b092257cc6eb11831760cec66ae8aef0fa67b61424a9fe16d21e7/sequana_denovo-0.8.2.tar.gz#sha256=5dd09f8bec7c79577e43b7f5aa88ecea5538203e3a65099d441fc965a4f45e48 (from https://pypi.org/simple/sequana-denovo/), version: 0.8.2 2020-07-19T10:15:40,160 Found link https://files.pythonhosted.org/packages/6a/5a/e3dcc5a64d3a6ed2e68bbc4ec7201a6af57ae073b697329713f2487ad793/sequana_denovo-0.8.3.tar.gz#sha256=9b34ecf60538ac3f510bb63ced9ea92c7ffe80bb1b9c0aa67c07ae00bef7c2ae (from https://pypi.org/simple/sequana-denovo/), version: 0.8.3 2020-07-19T10:15:40,161 Found link https://files.pythonhosted.org/packages/56/13/09f7d47d7e8d23247eb5ed2af89ee40c2190f7d9a30357ab59764aa5f78f/sequana_denovo-0.8.4.tar.gz#sha256=e9fd9922e6a82732844e6ea5aae59a17871648f5bd6189e009677fc207068044 (from https://pypi.org/simple/sequana-denovo/), version: 0.8.4 2020-07-19T10:15:40,170 Given no hashes to check 1 links for project 'sequana-denovo': discarding no candidates 2020-07-19T10:15:40,171 Using version 0.8.4 (newest of versions: 0.8.4) 2020-07-19T10:15:40,177 Collecting sequana-denovo==0.8.4 2020-07-19T10:15:40,180 Created temporary directory: /tmp/pip-unpack-dosl12i3 2020-07-19T10:15:40,302 Downloading sequana_denovo-0.8.4.tar.gz (360 kB) 2020-07-19T10:15:41,065 Added sequana-denovo==0.8.4 from https://files.pythonhosted.org/packages/56/13/09f7d47d7e8d23247eb5ed2af89ee40c2190f7d9a30357ab59764aa5f78f/sequana_denovo-0.8.4.tar.gz#sha256=e9fd9922e6a82732844e6ea5aae59a17871648f5bd6189e009677fc207068044 to build tracker '/tmp/pip-req-tracker-4p7cl75u' 2020-07-19T10:15:41,067 Running setup.py (path:/tmp/pip-wheel-gtpgfmun/sequana-denovo/setup.py) egg_info for package sequana-denovo 2020-07-19T10:15:41,069 Created temporary directory: /tmp/pip-pip-egg-info-nlvdguan 2020-07-19T10:15:41,069 Running command python setup.py egg_info 2020-07-19T10:15:43,244 running egg_info 2020-07-19T10:15:43,249 creating /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info 2020-07-19T10:15:43,269 writing /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/PKG-INFO 2020-07-19T10:15:43,278 writing dependency_links to /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/dependency_links.txt 2020-07-19T10:15:43,282 writing entry points to /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/entry_points.txt 2020-07-19T10:15:43,285 writing requirements to /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/requires.txt 2020-07-19T10:15:43,288 writing top-level names to /tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/top_level.txt 2020-07-19T10:15:43,291 writing manifest file '/tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/SOURCES.txt' 2020-07-19T10:15:43,596 reading manifest file '/tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/SOURCES.txt' 2020-07-19T10:15:43,599 reading manifest template 'MANIFEST.in' 2020-07-19T10:15:43,602 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-07-19T10:15:43,603 warning: no previously-included files matching '*pyc' found under directory '*' 2020-07-19T10:15:43,810 writing manifest file '/tmp/pip-pip-egg-info-nlvdguan/sequana_denovo.egg-info/SOURCES.txt' 2020-07-19T10:15:43,946 Source in /tmp/pip-wheel-gtpgfmun/sequana-denovo has version 0.8.4, which satisfies requirement sequana-denovo==0.8.4 from https://files.pythonhosted.org/packages/56/13/09f7d47d7e8d23247eb5ed2af89ee40c2190f7d9a30357ab59764aa5f78f/sequana_denovo-0.8.4.tar.gz#sha256=e9fd9922e6a82732844e6ea5aae59a17871648f5bd6189e009677fc207068044 2020-07-19T10:15:43,947 Removed sequana-denovo==0.8.4 from https://files.pythonhosted.org/packages/56/13/09f7d47d7e8d23247eb5ed2af89ee40c2190f7d9a30357ab59764aa5f78f/sequana_denovo-0.8.4.tar.gz#sha256=e9fd9922e6a82732844e6ea5aae59a17871648f5bd6189e009677fc207068044 from build tracker '/tmp/pip-req-tracker-4p7cl75u' 2020-07-19T10:15:43,952 Building wheels for collected packages: sequana-denovo 2020-07-19T10:15:43,961 Created temporary directory: /tmp/pip-wheel-m9mcqlwk 2020-07-19T10:15:43,962 Building wheel for sequana-denovo (setup.py): started 2020-07-19T10:15:43,963 Destination directory: /tmp/pip-wheel-m9mcqlwk 2020-07-19T10:15:43,963 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gtpgfmun/sequana-denovo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gtpgfmun/sequana-denovo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-m9mcqlwk 2020-07-19T10:15:46,029 running bdist_wheel 2020-07-19T10:15:46,035 running build 2020-07-19T10:15:46,036 running build_py 2020-07-19T10:15:46,295 creating build 2020-07-19T10:15:46,296 creating build/lib 2020-07-19T10:15:46,298 creating build/lib/sequana_pipelines 2020-07-19T10:15:46,299 creating build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,302 copying sequana_pipelines/denovo/__init__.py -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,306 copying sequana_pipelines/denovo/main.py -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,312 creating build/lib/sequana_pipelines/denovo/data 2020-07-19T10:15:46,314 copying sequana_pipelines/denovo/data/__init__.py -> build/lib/sequana_pipelines/denovo/data 2020-07-19T10:15:46,332 copying sequana_pipelines/denovo/config.yaml -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,337 copying sequana_pipelines/denovo/denovo.rules -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,343 copying sequana_pipelines/denovo/cluster_config.json -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,349 copying sequana_pipelines/denovo/requirements.txt -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,355 copying sequana_pipelines/denovo/dag.png -> build/lib/sequana_pipelines/denovo 2020-07-19T10:15:46,370 copying sequana_pipelines/denovo/data/JB409847.fasta -> build/lib/sequana_pipelines/denovo/data 2020-07-19T10:15:46,382 copying sequana_pipelines/denovo/data/data_R2_.fastq.gz -> build/lib/sequana_pipelines/denovo/data 2020-07-19T10:15:46,400 copying sequana_pipelines/denovo/data/data_R1_.fastq.gz -> build/lib/sequana_pipelines/denovo/data 2020-07-19T10:15:46,421 installing to build/bdist.linux-armv7l/wheel 2020-07-19T10:15:46,422 running install 2020-07-19T10:15:46,426 running install_lib 2020-07-19T10:15:46,436 creating build/bdist.linux-armv7l 2020-07-19T10:15:46,437 creating build/bdist.linux-armv7l/wheel 2020-07-19T10:15:46,442 creating build/bdist.linux-armv7l/wheel/sequana_pipelines 2020-07-19T10:15:46,446 creating build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,448 copying build/lib/sequana_pipelines/denovo/__init__.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,455 copying build/lib/sequana_pipelines/denovo/main.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,461 creating build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo/data 2020-07-19T10:15:46,463 copying build/lib/sequana_pipelines/denovo/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo/data 2020-07-19T10:15:46,469 copying build/lib/sequana_pipelines/denovo/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo/data 2020-07-19T10:15:46,473 copying build/lib/sequana_pipelines/denovo/data/data_R2_.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo/data 2020-07-19T10:15:46,491 copying build/lib/sequana_pipelines/denovo/data/data_R1_.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo/data 2020-07-19T10:15:46,507 copying build/lib/sequana_pipelines/denovo/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,511 copying build/lib/sequana_pipelines/denovo/dag.png -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,525 copying build/lib/sequana_pipelines/denovo/config.yaml -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,532 copying build/lib/sequana_pipelines/denovo/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,537 copying build/lib/sequana_pipelines/denovo/denovo.rules -> build/bdist.linux-armv7l/wheel/sequana_pipelines/denovo 2020-07-19T10:15:46,543 running install_egg_info 2020-07-19T10:15:46,557 running egg_info 2020-07-19T10:15:46,571 writing sequana_denovo.egg-info/PKG-INFO 2020-07-19T10:15:46,576 writing dependency_links to sequana_denovo.egg-info/dependency_links.txt 2020-07-19T10:15:46,579 writing entry points to sequana_denovo.egg-info/entry_points.txt 2020-07-19T10:15:46,581 writing requirements to sequana_denovo.egg-info/requires.txt 2020-07-19T10:15:46,584 writing top-level names to sequana_denovo.egg-info/top_level.txt 2020-07-19T10:15:46,594 reading manifest file 'sequana_denovo.egg-info/SOURCES.txt' 2020-07-19T10:15:46,603 reading manifest template 'MANIFEST.in' 2020-07-19T10:15:46,606 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-07-19T10:15:46,607 warning: no previously-included files matching '*pyc' found under directory '*' 2020-07-19T10:15:46,852 writing manifest file 'sequana_denovo.egg-info/SOURCES.txt' 2020-07-19T10:15:46,856 Copying sequana_denovo.egg-info to build/bdist.linux-armv7l/wheel/sequana_denovo-0.8.4-py3.7.egg-info 2020-07-19T10:15:46,895 running install_scripts 2020-07-19T10:15:46,971 creating build/bdist.linux-armv7l/wheel/sequana_denovo-0.8.4.dist-info/WHEEL 2020-07-19T10:15:46,976 creating '/tmp/pip-wheel-m9mcqlwk/sequana_denovo-0.8.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-07-19T10:15:46,985 adding 'sequana_pipelines/denovo/__init__.py' 2020-07-19T10:15:46,989 adding 'sequana_pipelines/denovo/cluster_config.json' 2020-07-19T10:15:46,993 adding 'sequana_pipelines/denovo/config.yaml' 2020-07-19T10:15:47,020 adding 'sequana_pipelines/denovo/dag.png' 2020-07-19T10:15:47,025 adding 'sequana_pipelines/denovo/denovo.rules' 2020-07-19T10:15:47,028 adding 'sequana_pipelines/denovo/main.py' 2020-07-19T10:15:47,030 adding 'sequana_pipelines/denovo/requirements.txt' 2020-07-19T10:15:47,045 adding 'sequana_pipelines/denovo/data/JB409847.fasta' 2020-07-19T10:15:47,048 adding 'sequana_pipelines/denovo/data/__init__.py' 2020-07-19T10:15:47,070 adding 'sequana_pipelines/denovo/data/data_R1_.fastq.gz' 2020-07-19T10:15:47,093 adding 'sequana_pipelines/denovo/data/data_R2_.fastq.gz' 2020-07-19T10:15:47,098 adding 'sequana_denovo-0.8.4.dist-info/METADATA' 2020-07-19T10:15:47,100 adding 'sequana_denovo-0.8.4.dist-info/WHEEL' 2020-07-19T10:15:47,102 adding 'sequana_denovo-0.8.4.dist-info/entry_points.txt' 2020-07-19T10:15:47,104 adding 'sequana_denovo-0.8.4.dist-info/top_level.txt' 2020-07-19T10:15:47,105 adding 'sequana_denovo-0.8.4.dist-info/RECORD' 2020-07-19T10:15:47,137 removing build/bdist.linux-armv7l/wheel 2020-07-19T10:15:47,293 Building wheel for sequana-denovo (setup.py): finished with status 'done' 2020-07-19T10:15:47,302 Created wheel for sequana-denovo: filename=sequana_denovo-0.8.4-py3-none-any.whl size=343685 sha256=2cd293a92d5334f20ba5f04e2d37323cc70e1de548fa3c9d4e62313e83b43ef4 2020-07-19T10:15:47,303 Stored in directory: /tmp/pip-ephem-wheel-cache-s6ubv5zb/wheels/a3/78/0d/c7db20942d179a91a38cc6830494e96aca2823afa2526ddba1 2020-07-19T10:15:47,306 Successfully built sequana-denovo 2020-07-19T10:15:47,373 Removed build tracker: '/tmp/pip-req-tracker-4p7cl75u'