2020-07-26T08:37:07,097 Created temporary directory: /tmp/pip-ephem-wheel-cache-bhja1l89 2020-07-26T08:37:07,101 Created temporary directory: /tmp/pip-req-tracker-ne_gwtoz 2020-07-26T08:37:07,102 Initialized build tracking at /tmp/pip-req-tracker-ne_gwtoz 2020-07-26T08:37:07,104 Created build tracker: /tmp/pip-req-tracker-ne_gwtoz 2020-07-26T08:37:07,105 Entered build tracker: /tmp/pip-req-tracker-ne_gwtoz 2020-07-26T08:37:07,106 Created temporary directory: /tmp/pip-wheel-8ydq0a7i 2020-07-26T08:37:07,126 1 location(s) to search for versions of BioSAK: 2020-07-26T08:37:07,126 * https://pypi.org/simple/biosak/ 2020-07-26T08:37:07,126 Fetching project page and analyzing links: https://pypi.org/simple/biosak/ 2020-07-26T08:37:07,129 Getting page https://pypi.org/simple/biosak/ 2020-07-26T08:37:07,133 Found index url https://pypi.org/simple 2020-07-26T08:37:07,683 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/b7/99/82d0e205d8001e24ce0d2ff2686ec8b10324752f31646f1d790fa6607f52/BioSAK-1.20.15.tar.gz#sha256=495c201a145632ec50180ef8d575164152aa35c561fdd072769e7bbbdd24299e (from https://pypi.org/simple/biosak/), version: 1.20.15 2020-07-26T08:37:07,738 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/ed/d1/bd39f283316c7b061e1deac984cd66eed9d2af815286a496b343c6ec687e/BioSAK-1.20.16-py2-none-any.whl#sha256=911f47a209efd2a2312361016a4708f8151de40d5a359b18256d34281dbc7d19 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,739 Found link https://files.pythonhosted.org/packages/be/7d/957d8c35ca7ea83c2920fc2af0870b736211eca32288f166ed609ba7d864/BioSAK-1.20.16.tar.gz#sha256=c330786f56e2f73bd53e77caa94c8bb7282c1d2639b81afcbf26287e5542048d (from https://pypi.org/simple/biosak/), version: 1.20.16 2020-07-26T08:37:07,740 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/61/a3/b11da19ee38e426cb99d03b06ea819974edebc5d7ee5f34a3fbf1a2e09bf/BioSAK-1.20.18.tar.gz#sha256=0c406fc009c3a951b23964c036729f2e78dbed337293eb5185a85c08c68c7c40 (from https://pypi.org/simple/biosak/), version: 1.20.18 2020-07-26T08:37:07,744 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/88/ba/a15527810a9cff65465bb2bcefe5e5646b1ca29b3f3ab9be7b6b1352c448/BioSAK-1.20.19-py2-none-any.whl#sha256=deccfddd88abb7f32f1bcfa4150401f524a17f000f5dd5e003416efd63816c3b (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,745 Found link https://files.pythonhosted.org/packages/5e/f6/d9fc15d3b8e00ded1216f94651e643ad0eaf86c9e4222da6215743d5964a/BioSAK-1.20.19.tar.gz#sha256=38b6e739d386752023a9d56ccec2e258dead1be247de035174fa0135710ba02e (from https://pypi.org/simple/biosak/), version: 1.20.19 2020-07-26T08:37:07,746 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/aa/01/667028b6780fccc34278b9a912cc58acad9d4fc0e33b093a2d603b6bb806/BioSAK-1.20.21.tar.gz#sha256=cfc67a6e429f78fc36a38c69db6ec8a2d1526a1888c89408f818c2375757783c (from https://pypi.org/simple/biosak/), version: 1.20.21 2020-07-26T08:37:07,750 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/b8/ca/288b4691adf6026220db7bd057e607cf09c6e0fd160bab1dcb93fb01cf9a/BioSAK-1.20.22-py2-none-any.whl#sha256=84c0cbbf9c06782a50f91c7a39f4d6ebb1be90d8e6b1f00cdaa30e961062b549 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,751 Found link https://files.pythonhosted.org/packages/20/89/42363445fb06e4ba99bdd1e0e1c98adef6554becb4356ed9164684eadfcf/BioSAK-1.20.22.tar.gz#sha256=188d8db888e703f4be655557477f2d2ba4aeff3adac593db1119ab2f216709c7 (from https://pypi.org/simple/biosak/), version: 1.20.22 2020-07-26T08:37:07,752 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/64/02/5dda3c87c642e4f1b421e6a10a769aec6e963a9fca9ec62d85e8ff7c6ed1/BioSAK-1.20.23-py2-none-any.whl#sha256=4223f0172b3552cf37c7a1b6855b9bfa4ab0ebdf688c980d1e8eb60343439118 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,753 Found link https://files.pythonhosted.org/packages/5e/b4/85010bd10fd1de49eaa2976f82e6283f6a17dbb2a45c68874238389149b2/BioSAK-1.20.23.tar.gz#sha256=34d4d6b3eb20a9f0f07b0e8e350bd74297588a81c0c184cb166f1eaf4d305349 (from https://pypi.org/simple/biosak/), version: 1.20.23 2020-07-26T08:37:07,754 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/82/09/5a277318c965f01df9db83caabf44fdc0d10a61bc06f55eda149b3533915/BioSAK-1.21.0-py2-none-any.whl#sha256=34677d6af52ed6509ba3ad725673353cda787f994a2fe6879eadff0f0bb0a725 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,755 Found link https://files.pythonhosted.org/packages/ff/c8/2dc68c3e49002b4af214689a9aa9e3748d33328d0ad2de751087142d903d/BioSAK-1.21.0.tar.gz#sha256=a806b1009974b95daedc8ae3c3806d0edaba592e230e536b682cb7dbf193252d (from https://pypi.org/simple/biosak/), version: 1.21.0 2020-07-26T08:37:07,756 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/c4/e8/96356888f0531719beac4ffc23887f03afa3644c8a47819fae310d3d2399/BioSAK-1.21.1-py2-none-any.whl#sha256=589badc3ed4bc69b25a91d0ccc9067d0bba05c52a9791a5c3f62ca9a703de6d1 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,757 Found link https://files.pythonhosted.org/packages/91/e8/af0a8ef652d2d940056a92b6a244f9b4eb6f10beffcfd35290b6ad13e862/BioSAK-1.21.1.tar.gz#sha256=651b268f3948f04b38289f3184c38e490a131ede8580ca3ad725e26f74f744ae (from https://pypi.org/simple/biosak/), version: 1.21.1 2020-07-26T08:37:07,758 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/18/52/1bfe28b90ac9ab7c0d7a6905231f94f1f5af06831b6f6105f91fca7b6dbc/BioSAK-1.21.3.tar.gz#sha256=e63b8d2ed55060d4e3cbc41d8e849ede2b924a9e0777760ea8fefc987dbc1aec (from https://pypi.org/simple/biosak/), version: 1.21.3 2020-07-26T08:37:07,763 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/d5/19/4faf91e2252022ad1549e7d5e7defcfc89a0a46c88ae62952e7fc6a0d5ea/BioSAK-1.22.0-py2-none-any.whl#sha256=2f665ce4101e44d9b3cbe2d967a612f80fabbbbae0306592acfc0f8b73e9e44c (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,764 Found link https://files.pythonhosted.org/packages/3c/4f/c628c2884d2f2824cf78b172ab806fdaebc85d062ff7f1a006ca283c92f7/BioSAK-1.22.0.tar.gz#sha256=febb95222edaa9288e714f380e32c7c763bdfef9b66b1f5e989f6d15c731b546 (from https://pypi.org/simple/biosak/), version: 1.22.0 2020-07-26T08:37:07,765 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/cc/f3/de2fb79495627edcdfeb01db7062933e879c1d9b2ea9f4d219ef28d1d6f1/BioSAK-1.22.2.tar.gz#sha256=90670f2d2ce28272dda10f99d9961a3c1c561d33403870f19cc6b2df0c1a8c61 (from https://pypi.org/simple/biosak/), version: 1.22.2 2020-07-26T08:37:07,769 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/5a/35/4650b368fb3ee2a77b09b9ee3c0699bea8d35a3537bc0c4002d49d1a33af/BioSAK-1.22.3-py3-none-any.whl#sha256=f1f49f24104e4ae41643a3b1c306e0c4c78abf2ff801975adf17c3612032fe04 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,770 Found link https://files.pythonhosted.org/packages/89/08/f16c5e443d8df9cfe81a80249966d2b0d10d29e223c08c8cb6d1f8ecf491/BioSAK-1.22.3.tar.gz#sha256=87db4d6bfea11382a7541b29100dc3a9d7b5489b112e0ecac5fd7a15e8287491 (from https://pypi.org/simple/biosak/), version: 1.22.3 2020-07-26T08:37:07,771 Skipping link: No binaries permitted for BioSAK: 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https://files.pythonhosted.org/packages/56/e0/0604858856e89ae2d1fc4ce134f70af044ad98f4d1d7322648c77259ae2f/BioSAK-1.22.5.tar.gz#sha256=f9ef695575c9a3b14f14646585ecd13ccf165fa04e4fe1113f6cd7bdc09c690f (from https://pypi.org/simple/biosak/), version: 1.22.5 2020-07-26T08:37:07,775 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/73/62/855a4afb444e8b9f694d7dd1845726cbed55c847c3c4df398694e140a57e/BioSAK-1.22.6-py3-none-any.whl#sha256=4f4d4120f412ce29e71540521ab4c7fa9c6346344c938e64f42e7ec3d905c151 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,776 Found link https://files.pythonhosted.org/packages/c4/87/c45d4ec8d66887ef9b9fb1157782c90c9f527714355db4680aacfa1bdf85/BioSAK-1.22.6.tar.gz#sha256=c6c4170ce73781d00c71a4f2929cf9f2d3f2beaedb6d3b901a80ba5abbc4eb21 (from https://pypi.org/simple/biosak/), version: 1.22.6 2020-07-26T08:37:07,777 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/52/38/6c32531adf2e9c022ba1fd4231f1d6a7e330b1e45515ae582053fb0c356f/BioSAK-1.22.7-py3-none-any.whl#sha256=a5bc8af6125fb4069d2fe9d850f517d2715c45788d2ae88f2d167f7cf8413e47 (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,778 Found link https://files.pythonhosted.org/packages/69/bb/9467f816d4ff69ed87e3bd54cf2ac793698fc704f2e4355a7bff82d19aa6/BioSAK-1.22.7.tar.gz#sha256=5762ecb37627055ae92df6d748b33dfe64c8d0bb43735dc757309e8551e8887b (from https://pypi.org/simple/biosak/), version: 1.22.7 2020-07-26T08:37:07,779 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/ea/1f/4bdb5b1e8683cc91ab07e3746b82df6f8a218d10e73a06ca4f2ea1ac9cf9/BioSAK-1.22.8-py3-none-any.whl#sha256=0a31a8b48dd4dc66c17b62dc8c46a36f3869f3f0fe45a0cbffa43ce581c6b07d (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,780 Found link https://files.pythonhosted.org/packages/50/bf/c5257cb7338d5dc6ca6b9414e544936f621d71812378344fe88c7f9d1b82/BioSAK-1.22.8.tar.gz#sha256=4e1763acbad0d07c1d72a8718891748466a45f5ad6b845650b4a8a7c789ac81c (from https://pypi.org/simple/biosak/), version: 1.22.8 2020-07-26T08:37:07,781 Skipping link: No binaries permitted for BioSAK: https://files.pythonhosted.org/packages/22/f7/519f8cfa3f0d622e604ad0910467e5e4052ff3a0d6b5e17f0ffe148ea0ad/BioSAK-1.22.9-py3-none-any.whl#sha256=c5bb1f2ecc168b51b8795be4079c91e88cdea5b782de20f2abfa2fe0703451cd (from https://pypi.org/simple/biosak/) 2020-07-26T08:37:07,782 Found link https://files.pythonhosted.org/packages/0c/6a/f18532ba64fcb561dafb2076963273fa3c92174893fe49192a4f4cedd60b/BioSAK-1.22.9.tar.gz#sha256=afd530a5835cfb040e17a5e3e2dc22346c2f836149140603ee4df47726bc72d0 (from https://pypi.org/simple/biosak/), version: 1.22.9 2020-07-26T08:37:07,814 Given no hashes to check 1 links for project 'BioSAK': discarding no candidates 2020-07-26T08:37:07,817 Using version 1.22.9 (newest of versions: 1.22.9) 2020-07-26T08:37:07,824 Collecting BioSAK==1.22.9 2020-07-26T08:37:07,829 Created temporary directory: /tmp/pip-unpack-x00rgkr_ 2020-07-26T08:37:08,148 Downloading BioSAK-1.22.9.tar.gz (1.7 MB) 2020-07-26T08:37:10,162 Added BioSAK==1.22.9 from https://files.pythonhosted.org/packages/0c/6a/f18532ba64fcb561dafb2076963273fa3c92174893fe49192a4f4cedd60b/BioSAK-1.22.9.tar.gz#sha256=afd530a5835cfb040e17a5e3e2dc22346c2f836149140603ee4df47726bc72d0 to build tracker '/tmp/pip-req-tracker-ne_gwtoz' 2020-07-26T08:37:10,166 Running setup.py (path:/tmp/pip-wheel-8ydq0a7i/BioSAK/setup.py) egg_info for package BioSAK 2020-07-26T08:37:10,168 Created temporary directory: /tmp/pip-pip-egg-info-k4j1g8xs 2020-07-26T08:37:10,169 Running command python setup.py egg_info 2020-07-26T08:37:12,705 running egg_info 2020-07-26T08:37:12,711 creating /tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info 2020-07-26T08:37:12,715 writing dependency_links to /tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/dependency_links.txt 2020-07-26T08:37:12,718 writing /tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/PKG-INFO 2020-07-26T08:37:12,725 writing top-level names to /tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/top_level.txt 2020-07-26T08:37:12,727 writing requirements to /tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/requires.txt 2020-07-26T08:37:12,731 writing manifest file '/tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/SOURCES.txt' 2020-07-26T08:37:13,165 reading manifest file '/tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/SOURCES.txt' 2020-07-26T08:37:13,168 reading manifest template 'MANIFEST.in' 2020-07-26T08:37:13,172 warning: no files found matching 'BioSAK/select_contig.pl' 2020-07-26T08:37:13,173 warning: no files found matching 'BioSAK/get_fasta_stats.pl' 2020-07-26T08:37:13,184 writing manifest file '/tmp/pip-pip-egg-info-k4j1g8xs/BioSAK.egg-info/SOURCES.txt' 2020-07-26T08:37:13,331 Source in /tmp/pip-wheel-8ydq0a7i/BioSAK has version 1.22.9, which satisfies requirement BioSAK==1.22.9 from https://files.pythonhosted.org/packages/0c/6a/f18532ba64fcb561dafb2076963273fa3c92174893fe49192a4f4cedd60b/BioSAK-1.22.9.tar.gz#sha256=afd530a5835cfb040e17a5e3e2dc22346c2f836149140603ee4df47726bc72d0 2020-07-26T08:37:13,333 Removed BioSAK==1.22.9 from https://files.pythonhosted.org/packages/0c/6a/f18532ba64fcb561dafb2076963273fa3c92174893fe49192a4f4cedd60b/BioSAK-1.22.9.tar.gz#sha256=afd530a5835cfb040e17a5e3e2dc22346c2f836149140603ee4df47726bc72d0 from build tracker '/tmp/pip-req-tracker-ne_gwtoz' 2020-07-26T08:37:13,336 Building wheels for collected packages: BioSAK 2020-07-26T08:37:13,348 Created temporary directory: /tmp/pip-wheel-h5kqoxig 2020-07-26T08:37:13,350 Building wheel for BioSAK (setup.py): started 2020-07-26T08:37:13,352 Destination directory: /tmp/pip-wheel-h5kqoxig 2020-07-26T08:37:13,353 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8ydq0a7i/BioSAK/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8ydq0a7i/BioSAK/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-h5kqoxig 2020-07-26T08:37:15,891 running bdist_wheel 2020-07-26T08:37:15,908 running build 2020-07-26T08:37:15,909 running build_py 2020-07-26T08:37:16,267 creating build 2020-07-26T08:37:16,268 creating build/lib 2020-07-26T08:37:16,269 creating build/lib/BioSAK 2020-07-26T08:37:16,272 copying BioSAK/plot_sam_depth.py -> build/lib/BioSAK 2020-07-26T08:37:16,278 copying BioSAK/get_EC_from_ko_stats_D.py -> build/lib/BioSAK 2020-07-26T08:37:16,282 copying BioSAK/COG2003.py -> build/lib/BioSAK 2020-07-26T08:37:16,287 copying BioSAK/split_folder.py -> build/lib/BioSAK 2020-07-26T08:37:16,291 copying BioSAK/global_functions.py -> build/lib/BioSAK 2020-07-26T08:37:16,295 copying BioSAK/manipulator_fasta.py -> build/lib/BioSAK 2020-07-26T08:37:16,299 copying BioSAK/get_gc.py -> build/lib/BioSAK 2020-07-26T08:37:16,305 copying BioSAK/KEGG_get_eukaryotic_kos.py -> build/lib/BioSAK 2020-07-26T08:37:16,310 copying BioSAK/manipulator_newick.py -> build/lib/BioSAK 2020-07-26T08:37:16,315 copying BioSAK/Prokka.py -> build/lib/BioSAK 2020-07-26T08:37:16,322 copying BioSAK/get_Pfam_hmms.py -> build/lib/BioSAK 2020-07-26T08:37:16,327 copying BioSAK/NetEnzymes.py -> build/lib/BioSAK 2020-07-26T08:37:16,335 copying BioSAK/SankeyTaxon.py -> build/lib/BioSAK 2020-07-26T08:37:16,341 copying BioSAK/boxplot_matrix_KEGG.py -> build/lib/BioSAK 2020-07-26T08:37:16,347 copying BioSAK/get_reads_from_sam.py -> build/lib/BioSAK 2020-07-26T08:37:16,352 copying BioSAK/get_aa_composition.py -> build/lib/BioSAK 2020-07-26T08:37:16,358 copying BioSAK/dbCAN.py -> build/lib/BioSAK 2020-07-26T08:37:16,365 copying BioSAK/get_bin_abundance.py -> build/lib/BioSAK 2020-07-26T08:37:16,370 copying BioSAK/KEGG.py -> build/lib/BioSAK 2020-07-26T08:37:16,378 copying BioSAK/boxplot_matrix_COG_backup.py -> build/lib/BioSAK 2020-07-26T08:37:16,383 copying BioSAK/gbk_to_ffn_faa.py -> build/lib/BioSAK 2020-07-26T08:37:16,389 copying BioSAK/sep_reads_by_barcode.py -> build/lib/BioSAK 2020-07-26T08:37:16,394 copying BioSAK/SILVA_for_BLCA.py -> build/lib/BioSAK 2020-07-26T08:37:16,399 copying BioSAK/BioSAK_config.py -> build/lib/BioSAK 2020-07-26T08:37:16,403 copying BioSAK/get_bin_abundance_old.py -> build/lib/BioSAK 2020-07-26T08:37:16,408 copying BioSAK/GTDB_for_BLCA.py -> build/lib/BioSAK 2020-07-26T08:37:16,412 copying BioSAK/FastaSplitler_by_num.py -> build/lib/BioSAK 2020-07-26T08:37:16,416 copying BioSAK/iTOL.py -> build/lib/BioSAK 2020-07-26T08:37:16,421 copying BioSAK/CheckM.py -> build/lib/BioSAK 2020-07-26T08:37:16,428 copying BioSAK/FastaSplitler_by_size.py -> build/lib/BioSAK 2020-07-26T08:37:16,433 copying BioSAK/download_GenBank_genome.py -> build/lib/BioSAK 2020-07-26T08:37:16,439 copying BioSAK/get_ko_gene_seqs.py -> build/lib/BioSAK 2020-07-26T08:37:16,445 copying BioSAK/get_TopHits_taxonomy.py -> build/lib/BioSAK 2020-07-26T08:37:16,451 copying BioSAK/COG2014.py -> build/lib/BioSAK 2020-07-26T08:37:16,461 copying BioSAK/sra_reads_downloader.py -> build/lib/BioSAK 2020-07-26T08:37:16,466 copying BioSAK/Prodigal.py -> build/lib/BioSAK 2020-07-26T08:37:16,472 copying BioSAK/Barrnap.py -> build/lib/BioSAK 2020-07-26T08:37:16,477 copying BioSAK/get_top_hit.py -> build/lib/BioSAK 2020-07-26T08:37:16,484 copying BioSAK/Enrichment.py -> build/lib/BioSAK 2020-07-26T08:37:16,493 copying BioSAK/parse_MetaCyc_RxnDB.py -> build/lib/BioSAK 2020-07-26T08:37:16,498 copying BioSAK/Reads_simulator.py -> build/lib/BioSAK 2020-07-26T08:37:16,504 copying BioSAK/Gene2Ctg.py -> build/lib/BioSAK 2020-07-26T08:37:16,510 copying BioSAK/fq2fa.py -> build/lib/BioSAK 2020-07-26T08:37:16,515 copying BioSAK/get_total_length.py -> build/lib/BioSAK 2020-07-26T08:37:16,520 copying BioSAK/BacDive.py -> build/lib/BioSAK 2020-07-26T08:37:16,525 copying BioSAK/select_seq.py -> build/lib/BioSAK 2020-07-26T08:37:16,529 copying BioSAK/boxplot_matrix_COG.py -> build/lib/BioSAK 2020-07-26T08:37:16,534 copying BioSAK/__init__.py -> build/lib/BioSAK 2020-07-26T08:37:16,537 copying BioSAK/Subset_tree.py -> build/lib/BioSAK 2020-07-26T08:37:16,541 copying BioSAK/keep_best_hit.py -> build/lib/BioSAK 2020-07-26T08:37:16,546 copying BioSAK/download_GenBank_genome2.py -> build/lib/BioSAK 2020-07-26T08:37:16,553 copying BioSAK/Newick_tree_plotter.py -> build/lib/BioSAK 2020-07-26T08:37:16,558 copying BioSAK/manipulator_msa.py -> build/lib/BioSAK 2020-07-26T08:37:16,563 copying BioSAK/get_gene_depth.py -> build/lib/BioSAK 2020-07-26T08:37:16,567 copying BioSAK/manipulator_sam.py -> build/lib/BioSAK 2020-07-26T08:37:16,571 copying BioSAK/get_SCG_tree.py -> build/lib/BioSAK 2020-07-26T08:37:16,577 copying BioSAK/rename_seq.py -> build/lib/BioSAK 2020-07-26T08:37:16,581 copying BioSAK/label_tree.py -> build/lib/BioSAK 2020-07-26T08:37:16,587 copying BioSAK/iTOL_backup.py -> build/lib/BioSAK 2020-07-26T08:37:16,592 copying BioSAK/format_converter.py -> build/lib/BioSAK 2020-07-26T08:37:16,597 running egg_info 2020-07-26T08:37:16,630 writing top-level names to BioSAK.egg-info/top_level.txt 2020-07-26T08:37:16,633 writing requirements to BioSAK.egg-info/requires.txt 2020-07-26T08:37:16,635 writing BioSAK.egg-info/PKG-INFO 2020-07-26T08:37:16,639 writing dependency_links to BioSAK.egg-info/dependency_links.txt 2020-07-26T08:37:16,657 reading manifest file 'BioSAK.egg-info/SOURCES.txt' 2020-07-26T08:37:16,663 reading manifest template 'MANIFEST.in' 2020-07-26T08:37:16,666 warning: no files found matching 'BioSAK/select_contig.pl' 2020-07-26T08:37:16,666 warning: no files found matching 'BioSAK/get_fasta_stats.pl' 2020-07-26T08:37:16,681 writing manifest file 'BioSAK.egg-info/SOURCES.txt' 2020-07-26T08:37:16,709 copying BioSAK/MetaCHIP_phylo.hmm -> build/lib/BioSAK 2020-07-26T08:37:17,015 copying BioSAK/MetaCyc_reactions_with_ec.txt -> build/lib/BioSAK 2020-07-26T08:37:17,129 copying BioSAK/VERSION -> build/lib/BioSAK 2020-07-26T08:37:17,134 copying BioSAK/cdd2cog.pl -> build/lib/BioSAK 2020-07-26T08:37:17,143 copying BioSAK/get_sankey_plot.R -> build/lib/BioSAK 2020-07-26T08:37:17,149 copying BioSAK/ko00001.keg -> build/lib/BioSAK 2020-07-26T08:37:17,474 copying BioSAK/label_tree.R -> build/lib/BioSAK 2020-07-26T08:37:17,546 running build_scripts 2020-07-26T08:37:17,547 creating build/scripts-3.5 2020-07-26T08:37:17,549 copying and adjusting bin/BioSAK -> build/scripts-3.5 2020-07-26T08:37:17,556 changing mode of build/scripts-3.5/BioSAK from 644 to 755 2020-07-26T08:37:17,564 installing to build/bdist.linux-armv7l/wheel 2020-07-26T08:37:17,565 running install 2020-07-26T08:37:17,567 running install_lib 2020-07-26T08:37:17,575 creating build/bdist.linux-armv7l 2020-07-26T08:37:17,576 creating build/bdist.linux-armv7l/wheel 2020-07-26T08:37:17,582 creating build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,584 copying build/lib/BioSAK/plot_sam_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,589 copying build/lib/BioSAK/get_EC_from_ko_stats_D.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,593 copying build/lib/BioSAK/COG2003.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,599 copying build/lib/BioSAK/split_folder.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,604 copying build/lib/BioSAK/global_functions.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,610 copying build/lib/BioSAK/manipulator_fasta.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,616 copying build/lib/BioSAK/get_gc.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,621 copying build/lib/BioSAK/KEGG_get_eukaryotic_kos.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,626 copying build/lib/BioSAK/manipulator_newick.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,632 copying build/lib/BioSAK/Prokka.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,638 copying build/lib/BioSAK/get_Pfam_hmms.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,644 copying build/lib/BioSAK/NetEnzymes.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,651 copying build/lib/BioSAK/SankeyTaxon.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,658 copying build/lib/BioSAK/boxplot_matrix_KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,664 copying build/lib/BioSAK/get_reads_from_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,669 copying build/lib/BioSAK/get_aa_composition.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,675 copying build/lib/BioSAK/dbCAN.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,683 copying build/lib/BioSAK/get_bin_abundance.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,689 copying build/lib/BioSAK/KEGG.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,699 copying build/lib/BioSAK/boxplot_matrix_COG_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,705 copying build/lib/BioSAK/gbk_to_ffn_faa.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,711 copying build/lib/BioSAK/sep_reads_by_barcode.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,716 copying build/lib/BioSAK/SILVA_for_BLCA.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:17,721 copying build/lib/BioSAK/ko00001.keg -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,031 copying build/lib/BioSAK/BioSAK_config.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,035 copying build/lib/BioSAK/get_bin_abundance_old.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,040 copying build/lib/BioSAK/GTDB_for_BLCA.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,045 copying build/lib/BioSAK/FastaSplitler_by_num.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,051 copying build/lib/BioSAK/iTOL.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,058 copying build/lib/BioSAK/CheckM.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,064 copying build/lib/BioSAK/FastaSplitler_by_size.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,070 copying build/lib/BioSAK/download_GenBank_genome.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,076 copying build/lib/BioSAK/get_ko_gene_seqs.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,083 copying build/lib/BioSAK/get_TopHits_taxonomy.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,088 copying build/lib/BioSAK/COG2014.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,098 copying build/lib/BioSAK/get_sankey_plot.R -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,104 copying build/lib/BioSAK/sra_reads_downloader.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,109 copying build/lib/BioSAK/Prodigal.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,115 copying build/lib/BioSAK/Barrnap.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,121 copying build/lib/BioSAK/get_top_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,127 copying build/lib/BioSAK/Enrichment.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,137 copying build/lib/BioSAK/MetaCHIP_phylo.hmm -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,448 copying build/lib/BioSAK/MetaCyc_reactions_with_ec.txt -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,562 copying build/lib/BioSAK/parse_MetaCyc_RxnDB.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,566 copying build/lib/BioSAK/Reads_simulator.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,572 copying build/lib/BioSAK/label_tree.R -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,577 copying build/lib/BioSAK/Gene2Ctg.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,582 copying build/lib/BioSAK/fq2fa.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,588 copying build/lib/BioSAK/get_total_length.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,593 copying build/lib/BioSAK/BacDive.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,599 copying build/lib/BioSAK/select_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,605 copying build/lib/BioSAK/boxplot_matrix_COG.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,611 copying build/lib/BioSAK/__init__.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,615 copying build/lib/BioSAK/VERSION -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,621 copying build/lib/BioSAK/Subset_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,627 copying build/lib/BioSAK/keep_best_hit.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,632 copying build/lib/BioSAK/download_GenBank_genome2.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,638 copying build/lib/BioSAK/Newick_tree_plotter.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,644 copying build/lib/BioSAK/manipulator_msa.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,648 copying build/lib/BioSAK/get_gene_depth.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,655 copying build/lib/BioSAK/cdd2cog.pl -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,662 copying build/lib/BioSAK/manipulator_sam.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,667 copying build/lib/BioSAK/get_SCG_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,675 copying build/lib/BioSAK/rename_seq.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,680 copying build/lib/BioSAK/label_tree.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,687 copying build/lib/BioSAK/iTOL_backup.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,692 copying build/lib/BioSAK/format_converter.py -> build/bdist.linux-armv7l/wheel/BioSAK 2020-07-26T08:37:18,697 running install_egg_info 2020-07-26T08:37:18,721 Copying BioSAK.egg-info to build/bdist.linux-armv7l/wheel/BioSAK-1.22.9-py3.5.egg-info 2020-07-26T08:37:18,742 running install_scripts 2020-07-26T08:37:18,871 creating build/bdist.linux-armv7l/wheel/BioSAK-1.22.9.data 2020-07-26T08:37:18,872 creating build/bdist.linux-armv7l/wheel/BioSAK-1.22.9.data/scripts 2020-07-26T08:37:18,874 copying build/scripts-3.5/BioSAK -> build/bdist.linux-armv7l/wheel/BioSAK-1.22.9.data/scripts 2020-07-26T08:37:18,882 changing mode of build/bdist.linux-armv7l/wheel/BioSAK-1.22.9.data/scripts/BioSAK to 755 2020-07-26T08:37:18,944 creating build/bdist.linux-armv7l/wheel/BioSAK-1.22.9.dist-info/WHEEL 2020-07-26T08:37:21,443 Building wheel for BioSAK (setup.py): finished with status 'done' 2020-07-26T08:37:21,474 Created wheel for BioSAK: filename=BioSAK-1.22.9-py3-none-any.whl size=1712960 sha256=ee1622a6f7c50f8f108d709acedbbd59985388f66d3dc8e1479344b17615cfd7 2020-07-26T08:37:21,475 Stored in directory: /tmp/pip-ephem-wheel-cache-bhja1l89/wheels/5b/42/f9/3e550e07c6877759c69c8894294547e3ffea64c82c396bf873 2020-07-26T08:37:21,479 Successfully built BioSAK 2020-07-26T08:37:21,784 Removed build tracker: '/tmp/pip-req-tracker-ne_gwtoz'