2020-07-28T17:06:03,010 Created temporary directory: /tmp/pip-ephem-wheel-cache-4rga2as5 2020-07-28T17:06:03,014 Created temporary directory: /tmp/pip-req-tracker-g6axlxkr 2020-07-28T17:06:03,015 Initialized build tracking at /tmp/pip-req-tracker-g6axlxkr 2020-07-28T17:06:03,015 Created build tracker: /tmp/pip-req-tracker-g6axlxkr 2020-07-28T17:06:03,016 Entered build tracker: /tmp/pip-req-tracker-g6axlxkr 2020-07-28T17:06:03,017 Created temporary directory: /tmp/pip-wheel-ewi6g9aw 2020-07-28T17:06:03,031 1 location(s) to search for versions of dadi: 2020-07-28T17:06:03,031 * https://pypi.org/simple/dadi/ 2020-07-28T17:06:03,031 Fetching project page and analyzing links: https://pypi.org/simple/dadi/ 2020-07-28T17:06:03,033 Getting page https://pypi.org/simple/dadi/ 2020-07-28T17:06:03,036 Found index url https://pypi.org/simple 2020-07-28T17:06:03,250 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/a0/90/3c79d2526f0a8d618db53d12845c82e0c4da4d26e8cf3180a7d7074f348a/dadi-1.9.92-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=f512d91bb45eaa4463ef9d8b7e3391d9d5292428f2179e73d0859d319e444a9c (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,251 Found link https://files.pythonhosted.org/packages/41/b7/79564b96938451691e1505554798f4d62748ea25d64bf589e883455938da/dadi-1.9.92.tar.gz#sha256=c842ed5641b46d5d0ba5a5f3a7bc0ab7a588324e376ecc0743514448eb080611 (from https://pypi.org/simple/dadi/), version: 1.9.92 2020-07-28T17:06:03,252 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/53/5e/fea903fd0c54bdd9d87e9d0a8e552204f4596bcbb40173d469742ac1ab6d/dadi-2.0.1-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=80bd4d1a3157545b92a43840613d325d4e493e1a7df0154cc5572d4e6cda8a3b (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,252 Found link https://files.pythonhosted.org/packages/06/94/dbf599959d8a04ea52c520414d1af185a8f57cd2c2be7181af97e927852a/dadi-2.0.1.tar.gz#sha256=a3bf1d780eb97bd3a9804c063e5a463ca8b7c9bb2a4bc21b23ef0b5192d67be3 (from https://pypi.org/simple/dadi/), version: 2.0.1 2020-07-28T17:06:03,253 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/2e/b8/8b868a117552fde24a5d513e8673fa059bd106fc87c1bb8743b000cc343d/dadi-2.0.2-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=de3bc70b1c95c750e641e0e1b05ce757bd8894b1ab61406483a6281144458b43 (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,253 Found link https://files.pythonhosted.org/packages/05/3c/0679df7beac434aa1dfaae53ef4b1717d849dcc8b7eadf2ef0f42545f22c/dadi-2.0.2.tar.gz#sha256=91013eaca614600944254e8618e02de188461cb35d6a1fdf8133b2acd722803d (from https://pypi.org/simple/dadi/), version: 2.0.2 2020-07-28T17:06:03,254 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/2b/87/9645c8580abd51d5be25532f7927e067020cf03871b5a1468c29849a72af/dadi-2.0.3-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=bfb0af514aacae0da5be85f15cb562d851e44406dacb419770f59d16e28540a7 (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,255 Found link https://files.pythonhosted.org/packages/20/43/6bb9b18f73e31701eeff2f69ca3964ea8ce483bd444ecb4c8bc3a20350f1/dadi-2.0.3.tar.gz#sha256=3c0259325ae9bdb803f310973d4624d0054e2afa9fae5a5d1fa6d31aaec637b7 (from https://pypi.org/simple/dadi/), version: 2.0.3 2020-07-28T17:06:03,255 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/3b/59/aef8d0105a55ea7024c0fdae8b5d981bc02ae2dce6c962a3ab5c838c87ee/dadi-2.0.4-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=0556c2f6d7f20e45ee485ee247661bf04f5613062bfa292d3e7e4625ebcd8571 (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,256 Found link https://files.pythonhosted.org/packages/67/b8/da1c9fa1e38411f1bfb4ef1df6405ed8adbc26ccca9f3f084f248a91cb70/dadi-2.0.4.tar.gz#sha256=e50112a06678f795155e963caf4800936399b231bb7d063e735d26357ec6f645 (from https://pypi.org/simple/dadi/), version: 2.0.4 2020-07-28T17:06:03,256 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/b9/12/7c937c7d55f57f519b15ae85b3a893915a91aeddeb86b60d204d9b8a0b95/dadi-2.0.5-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=addb28c6c845ea8380d98068e88ba009111aabc8a1f1d9e8de3bdccde39c92ff (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,257 Found link https://files.pythonhosted.org/packages/1d/79/b0703bf0a3bccfd46243719970c4c12ef9d25702c1c1f11a38cd858feeba/dadi-2.0.5.tar.gz#sha256=6a14fc996062bfd7bcfda5a08177458fc12dd2e14dda5d78f94e91db32d97b45 (from https://pypi.org/simple/dadi/), version: 2.0.5 2020-07-28T17:06:03,257 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/bf/ec/4028c2bc860bc5fd000757a85580f06d372cf0093ad3d69fc337f4e3638f/dadi-2.0.6-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=1711d2b5dbf96df7ee42e3b1e56f74eeec04b27b207b10c470984f0d98ffdb06 (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,258 Found link https://files.pythonhosted.org/packages/8f/37/bd2a39f621a56e9c48d8bfe234583e1de6548c78fb56ada775e0f660ecd4/dadi-2.0.6.tar.gz#sha256=41727bf965005f3345493eb53d424631a315768a3ba054530a7e13259c6e2a9c (from https://pypi.org/simple/dadi/), version: 2.0.6 2020-07-28T17:06:03,258 Skipping link: No binaries permitted for dadi: https://files.pythonhosted.org/packages/68/7a/555e1602617ed94760f124020cd81e93387a50111223161fa1aef70fc203/dadi-2.1.0-cp37-cp37m-macosx_10_7_x86_64.whl#sha256=abe233ee9114b0f6a672ccedfdafe019cec46ab4006b86bf3e6d057ecd96784d (from https://pypi.org/simple/dadi/) 2020-07-28T17:06:03,259 Found link https://files.pythonhosted.org/packages/ef/2d/b8636392a28b5d7fe2665a15ab9899651ed7e2af7264c8685e648371aa5c/dadi-2.1.0.tar.gz#sha256=97a15aa7ef501850cad4cff66b11b66ecb65d5d68acbf2ff713585c81c3a1038 (from https://pypi.org/simple/dadi/), version: 2.1.0 2020-07-28T17:06:03,269 Given no hashes to check 1 links for project 'dadi': discarding no candidates 2020-07-28T17:06:03,270 Using version 2.1.0 (newest of versions: 2.1.0) 2020-07-28T17:06:03,276 Collecting dadi==2.1.0 2020-07-28T17:06:03,279 Created temporary directory: /tmp/pip-unpack-85tcnek1 2020-07-28T17:06:03,371 Downloading dadi-2.1.0.tar.gz (2.3 MB) 2020-07-28T17:06:05,676 Added dadi==2.1.0 from https://files.pythonhosted.org/packages/ef/2d/b8636392a28b5d7fe2665a15ab9899651ed7e2af7264c8685e648371aa5c/dadi-2.1.0.tar.gz#sha256=97a15aa7ef501850cad4cff66b11b66ecb65d5d68acbf2ff713585c81c3a1038 to build tracker '/tmp/pip-req-tracker-g6axlxkr' 2020-07-28T17:06:05,679 Running setup.py (path:/tmp/pip-wheel-ewi6g9aw/dadi/setup.py) egg_info for package dadi 2020-07-28T17:06:05,681 Created temporary directory: /tmp/pip-pip-egg-info-dbpwheqh 2020-07-28T17:06:05,682 Running command python setup.py egg_info 2020-07-28T17:06:08,566 running egg_info 2020-07-28T17:06:08,570 running build_src 2020-07-28T17:06:08,574 build_src 2020-07-28T17:06:08,575 building extension "dadi.tridiag" sources 2020-07-28T17:06:08,577 creating build 2020-07-28T17:06:08,577 creating build/src.linux-armv7l-3.7 2020-07-28T17:06:08,579 creating build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:08,580 f2py options: [] 2020-07-28T17:06:08,581 f2py: dadi/tridiag.pyf 2020-07-28T17:06:09,097 Reading fortran codes... 2020-07-28T17:06:09,097 Reading file 'dadi/tridiag.pyf' (format:free) 2020-07-28T17:06:09,098 Line #5 in dadi/tridiag.pyf:" intent(c) " 2020-07-28T17:06:09,098 All arguments will have attribute intent(c) 2020-07-28T17:06:09,099 Line #15 in dadi/tridiag.pyf:" intent(c) " 2020-07-28T17:06:09,100 All arguments will have attribute intent(c) 2020-07-28T17:06:09,100 Post-processing... 2020-07-28T17:06:09,101 Block: tridiag 2020-07-28T17:06:09,101 Block: tridiag 2020-07-28T17:06:09,102 Block: tridiag_fl 2020-07-28T17:06:09,102 Post-processing (stage 2)... 2020-07-28T17:06:09,103 Building modules... 2020-07-28T17:06:09,103 Building module "tridiag"... 2020-07-28T17:06:09,104 Constructing wrapper function "tridiag"... 2020-07-28T17:06:09,104 u = tridiag(a,b,c,r) 2020-07-28T17:06:09,105 Constructing wrapper function "tridiag_fl"... 2020-07-28T17:06:09,105 u = tridiag_fl(a,b,c,r) 2020-07-28T17:06:09,106 Wrote C/API module "tridiag" to file "build/src.linux-armv7l-3.7/dadi/tridiagmodule.c" 2020-07-28T17:06:09,106 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2020-07-28T17:06:09,107 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2020-07-28T17:06:09,107 creating build/src.linux-armv7l-3.7/build 2020-07-28T17:06:09,108 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2020-07-28T17:06:09,108 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:09,109 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:09,123 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:09,130 building extension "dadi.integration_c" sources 2020-07-28T17:06:09,132 f2py options: [] 2020-07-28T17:06:09,133 f2py: dadi/integration_c.pyf 2020-07-28T17:06:12,647 Reading fortran codes... 2020-07-28T17:06:12,649 Reading file 'dadi/integration_c.pyf' (format:free) 2020-07-28T17:06:12,650 Line #5 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,651 All arguments will have attribute intent(c) 2020-07-28T17:06:12,652 Line #18 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,653 All arguments will have attribute intent(c) 2020-07-28T17:06:12,653 Line #35 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,654 All arguments will have attribute intent(c) 2020-07-28T17:06:12,655 Line #52 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,656 All arguments will have attribute intent(c) 2020-07-28T17:06:12,657 Line #65 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,658 All arguments will have attribute intent(c) 2020-07-28T17:06:12,659 Line #78 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,660 All arguments will have attribute intent(c) 2020-07-28T17:06:12,661 Line #98 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,661 All arguments will have attribute intent(c) 2020-07-28T17:06:12,662 Line #118 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,662 All arguments will have attribute intent(c) 2020-07-28T17:06:12,663 Line #138 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,663 All arguments will have attribute intent(c) 2020-07-28T17:06:12,664 Line #152 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,664 All arguments will have attribute intent(c) 2020-07-28T17:06:12,664 Line #166 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,665 All arguments will have attribute intent(c) 2020-07-28T17:06:12,665 Line #180 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,665 All arguments will have attribute intent(c) 2020-07-28T17:06:12,666 Line #201 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,666 All arguments will have attribute intent(c) 2020-07-28T17:06:12,666 Line #222 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,667 All arguments will have attribute intent(c) 2020-07-28T17:06:12,667 Line #243 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,667 All arguments will have attribute intent(c) 2020-07-28T17:06:12,668 Line #264 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,668 All arguments will have attribute intent(c) 2020-07-28T17:06:12,668 Line #288 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,669 All arguments will have attribute intent(c) 2020-07-28T17:06:12,669 Line #312 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,670 All arguments will have attribute intent(c) 2020-07-28T17:06:12,670 Line #336 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,670 All arguments will have attribute intent(c) 2020-07-28T17:06:12,671 Line #360 in dadi/integration_c.pyf:" intent(c) " 2020-07-28T17:06:12,671 All arguments will have attribute intent(c) 2020-07-28T17:06:12,671 Post-processing... 2020-07-28T17:06:12,672 Block: integration_c 2020-07-28T17:06:12,672 Block: implicit_1Dx 2020-07-28T17:06:12,672 Block: implicit_2Dx 2020-07-28T17:06:12,673 Block: implicit_2Dy 2020-07-28T17:06:12,673 Block: implicit_precalc_2Dx 2020-07-28T17:06:12,673 Block: implicit_precalc_2Dy 2020-07-28T17:06:12,674 Block: implicit_3Dx 2020-07-28T17:06:12,674 Block: implicit_3Dy 2020-07-28T17:06:12,674 Block: implicit_3Dz 2020-07-28T17:06:12,675 Block: implicit_precalc_3Dx 2020-07-28T17:06:12,675 Block: implicit_precalc_3Dy 2020-07-28T17:06:12,675 Block: implicit_precalc_3Dz 2020-07-28T17:06:12,676 Block: implicit_4Dx 2020-07-28T17:06:12,676 Block: implicit_4Dy 2020-07-28T17:06:12,676 Block: implicit_4Dz 2020-07-28T17:06:12,677 Block: implicit_4Da 2020-07-28T17:06:12,677 Block: implicit_5Dx 2020-07-28T17:06:12,677 Block: implicit_5Dy 2020-07-28T17:06:12,678 Block: implicit_5Dz 2020-07-28T17:06:12,678 Block: implicit_5Da 2020-07-28T17:06:12,678 Block: implicit_5Db 2020-07-28T17:06:12,679 Post-processing (stage 2)... 2020-07-28T17:06:12,679 Building modules... 2020-07-28T17:06:12,680 Building module "integration_c"... 2020-07-28T17:06:12,680 Constructing wrapper function "implicit_1Dx"... 2020-07-28T17:06:12,680 phi = implicit_1Dx(phi,xx,nu,gamma,h,beta,dt,use_delj_trick) 2020-07-28T17:06:12,681 Constructing wrapper function "implicit_2Dx"... 2020-07-28T17:06:12,681 phi = implicit_2Dx(phi,xx,yy,nu1,m12,gamma1,h1,dt,use_delj_trick,[Mstart,Mend]) 2020-07-28T17:06:12,681 Constructing wrapper function "implicit_2Dy"... 2020-07-28T17:06:12,682 phi = implicit_2Dy(phi,xx,yy,nu2,m21,gamma2,h2,dt,use_delj_trick,[Lstart,Lend]) 2020-07-28T17:06:12,682 Constructing wrapper function "implicit_precalc_2Dx"... 2020-07-28T17:06:12,682 phi = implicit_precalc_2Dx(phi,ax,bx,cx,dt,[Mstart,Mend]) 2020-07-28T17:06:12,683 Constructing wrapper function "implicit_precalc_2Dy"... 2020-07-28T17:06:12,683 phi = implicit_precalc_2Dy(phi,ay,by,cy,dt,[Lstart,Lend]) 2020-07-28T17:06:12,683 Constructing wrapper function "implicit_3Dx"... 2020-07-28T17:06:12,684 phi = implicit_3Dx(phi,xx,yy,zz,nu1,m12,m13,gamma1,h1,dt,use_delj_trick,[Mstart,Mend]) 2020-07-28T17:06:12,684 Constructing wrapper function "implicit_3Dy"... 2020-07-28T17:06:12,684 phi = implicit_3Dy(phi,xx,yy,zz,nu2,m21,m23,gamma2,h2,dt,use_delj_trick,[Lstart,Lend]) 2020-07-28T17:06:12,685 Constructing wrapper function "implicit_3Dz"... 2020-07-28T17:06:12,685 phi = implicit_3Dz(phi,xx,yy,zz,nu3,m31,m32,gamma3,h3,dt,use_delj_trick,[Lstart,Lend]) 2020-07-28T17:06:12,685 Constructing wrapper function "implicit_precalc_3Dx"... 2020-07-28T17:06:12,686 phi = implicit_precalc_3Dx(phi,ax,bx,cx,dt,[Mstart,Mend]) 2020-07-28T17:06:12,686 Constructing wrapper function "implicit_precalc_3Dy"... 2020-07-28T17:06:12,686 phi = implicit_precalc_3Dy(phi,ay,by,cy,dt,[Lstart,Lend]) 2020-07-28T17:06:12,687 Constructing wrapper function "implicit_precalc_3Dz"... 2020-07-28T17:06:12,687 phi = implicit_precalc_3Dz(phi,az,bz,cz,dt,[Lstart,Lend]) 2020-07-28T17:06:12,687 Constructing wrapper function "implicit_4Dx"... 2020-07-28T17:06:12,688 phi = implicit_4Dx(phi,xx,yy,zz,aa,nu1,m12,m13,m14,gamma1,h1,dt,use_delj_trick) 2020-07-28T17:06:12,688 Constructing wrapper function "implicit_4Dy"... 2020-07-28T17:06:12,689 phi = implicit_4Dy(phi,xx,yy,zz,aa,nu2,m21,m23,m24,gamma2,h2,dt,use_delj_trick) 2020-07-28T17:06:12,689 Constructing wrapper function "implicit_4Dz"... 2020-07-28T17:06:12,689 phi = implicit_4Dz(phi,xx,yy,zz,aa,nu3,m31,m32,m34,gamma3,h3,dt,use_delj_trick) 2020-07-28T17:06:12,690 Constructing wrapper function "implicit_4Da"... 2020-07-28T17:06:12,690 phi = implicit_4Da(phi,xx,yy,zz,aa,nu4,m41,m42,m43,gamma4,h4,dt,use_delj_trick) 2020-07-28T17:06:12,690 Constructing wrapper function "implicit_5Dx"... 2020-07-28T17:06:12,691 phi = implicit_5Dx(phi,xx,yy,zz,aa,bb,nu1,m12,m13,m14,m15,gamma1,h1,dt,use_delj_trick) 2020-07-28T17:06:12,691 Constructing wrapper function "implicit_5Dy"... 2020-07-28T17:06:12,691 phi = implicit_5Dy(phi,xx,yy,zz,aa,bb,nu2,m21,m23,m24,m25,gamma2,h2,dt,use_delj_trick) 2020-07-28T17:06:12,692 Constructing wrapper function "implicit_5Dz"... 2020-07-28T17:06:12,692 phi = implicit_5Dz(phi,xx,yy,zz,aa,bb,nu3,m31,m32,m34,m35,gamma3,h3,dt,use_delj_trick) 2020-07-28T17:06:12,692 Constructing wrapper function "implicit_5Da"... 2020-07-28T17:06:12,693 phi = implicit_5Da(phi,xx,yy,zz,aa,bb,nu4,m41,m42,m43,m45,gamma4,h4,dt,use_delj_trick) 2020-07-28T17:06:12,693 Constructing wrapper function "implicit_5Db"... 2020-07-28T17:06:12,693 phi = implicit_5Db(phi,xx,yy,zz,aa,bb,nu5,m51,m52,m53,m54,gamma5,h5,dt,use_delj_trick) 2020-07-28T17:06:12,694 Wrote C/API module "integration_c" to file "build/src.linux-armv7l-3.7/dadi/integration_cmodule.c" 2020-07-28T17:06:12,694 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2020-07-28T17:06:12,694 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2020-07-28T17:06:12,695 building extension "dadi.DFE.PDFs_c" sources 2020-07-28T17:06:12,695 creating build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:12,695 f2py options: [] 2020-07-28T17:06:12,696 f2py: dadi/DFE/PDFs.pyf 2020-07-28T17:06:12,942 Reading fortran codes... 2020-07-28T17:06:12,942 Reading file 'dadi/DFE/PDFs.pyf' (format:free) 2020-07-28T17:06:12,943 Line #5 in dadi/DFE/PDFs.pyf:" intent(c) " 2020-07-28T17:06:12,943 All arguments will have attribute intent(c) 2020-07-28T17:06:12,944 Line #16 in dadi/DFE/PDFs.pyf:" intent(c) " 2020-07-28T17:06:12,944 All arguments will have attribute intent(c) 2020-07-28T17:06:12,945 Line #22 in dadi/DFE/PDFs.pyf:" intent(c) " 2020-07-28T17:06:12,945 All arguments will have attribute intent(c) 2020-07-28T17:06:12,946 Post-processing... 2020-07-28T17:06:12,946 Block: PDFs_c 2020-07-28T17:06:12,948 Block: biv_lognormal 2020-07-28T17:06:12,948 Block: gamma_func 2020-07-28T17:06:12,949 Block: biv_ind_gamma 2020-07-28T17:06:12,950 Post-processing (stage 2)... 2020-07-28T17:06:12,950 Building modules... 2020-07-28T17:06:12,951 Building module "PDFs_c"... 2020-07-28T17:06:12,951 Constructing wrapper function "biv_lognormal"... 2020-07-28T17:06:12,952 output = biv_lognormal(xx,yy,params) 2020-07-28T17:06:12,953 Constructing wrapper function "gamma_func"... 2020-07-28T17:06:12,953 y = gamma_func(z) 2020-07-28T17:06:12,953 Constructing wrapper function "biv_ind_gamma"... 2020-07-28T17:06:12,954 output = biv_ind_gamma(xx,yy,params) 2020-07-28T17:06:12,954 Wrote C/API module "PDFs_c" to file "build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c" 2020-07-28T17:06:12,955 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c' to sources. 2020-07-28T17:06:12,956 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE' to include_dirs. 2020-07-28T17:06:12,957 creating build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:12,957 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:12,958 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:12,959 build_src: building npy-pkg config files 2020-07-28T17:06:12,963 creating /tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info 2020-07-28T17:06:12,976 writing /tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/PKG-INFO 2020-07-28T17:06:12,981 writing dependency_links to /tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/dependency_links.txt 2020-07-28T17:06:12,986 writing top-level names to /tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/top_level.txt 2020-07-28T17:06:12,990 writing manifest file '/tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/SOURCES.txt' 2020-07-28T17:06:13,022 reading manifest file '/tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/SOURCES.txt' 2020-07-28T17:06:13,025 reading manifest template 'MANIFEST.in' 2020-07-28T17:06:13,173 warning: no files found matching 'manual.pdf' under directory 'doc' 2020-07-28T17:06:13,174 warning: no files found matching '*.tex' under directory 'doc' 2020-07-28T17:06:13,175 warning: no files found matching '*.bib' under directory 'doc' 2020-07-28T17:06:13,366 warning: no previously-included files matching '*.msout' found anywhere in distribution 2020-07-28T17:06:13,370 warning: no previously-included files matching '*.swp' found anywhere in distribution 2020-07-28T17:06:13,374 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2020-07-28T17:06:13,377 warning: no previously-included files matching 'seedms' found anywhere in distribution 2020-07-28T17:06:13,381 warning: no previously-included files matching '*.png' found anywhere in distribution 2020-07-28T17:06:13,383 warning: no previously-included files matching '*.bpkl' found anywhere in distribution 2020-07-28T17:06:13,386 warning: no previously-included files matching '*.npz' found anywhere in distribution 2020-07-28T17:06:13,389 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-07-28T17:06:13,391 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2020-07-28T17:06:13,411 writing manifest file '/tmp/pip-pip-egg-info-dbpwheqh/dadi.egg-info/SOURCES.txt' 2020-07-28T17:06:13,414 appenddecl: "intent" not implemented. 2020-07-28T17:06:13,647 Source in /tmp/pip-wheel-ewi6g9aw/dadi has version 2.1.0, which satisfies requirement dadi==2.1.0 from https://files.pythonhosted.org/packages/ef/2d/b8636392a28b5d7fe2665a15ab9899651ed7e2af7264c8685e648371aa5c/dadi-2.1.0.tar.gz#sha256=97a15aa7ef501850cad4cff66b11b66ecb65d5d68acbf2ff713585c81c3a1038 2020-07-28T17:06:13,648 Removed dadi==2.1.0 from https://files.pythonhosted.org/packages/ef/2d/b8636392a28b5d7fe2665a15ab9899651ed7e2af7264c8685e648371aa5c/dadi-2.1.0.tar.gz#sha256=97a15aa7ef501850cad4cff66b11b66ecb65d5d68acbf2ff713585c81c3a1038 from build tracker '/tmp/pip-req-tracker-g6axlxkr' 2020-07-28T17:06:13,652 Building wheels for collected packages: dadi 2020-07-28T17:06:13,661 Created temporary directory: /tmp/pip-wheel-w_gtz_ds 2020-07-28T17:06:13,662 Building wheel for dadi (setup.py): started 2020-07-28T17:06:13,663 Destination directory: /tmp/pip-wheel-w_gtz_ds 2020-07-28T17:06:13,663 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ewi6g9aw/dadi/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ewi6g9aw/dadi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w_gtz_ds 2020-07-28T17:06:16,433 running bdist_wheel 2020-07-28T17:06:16,436 running build 2020-07-28T17:06:16,436 running config_cc 2020-07-28T17:06:16,437 unifing config_cc, config, build_clib, build_ext, build commands --compiler options 2020-07-28T17:06:16,438 running config_fc 2020-07-28T17:06:16,438 unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options 2020-07-28T17:06:16,438 running build_src 2020-07-28T17:06:16,439 build_src 2020-07-28T17:06:16,440 building extension "dadi.tridiag" sources 2020-07-28T17:06:16,440 f2py options: [] 2020-07-28T17:06:16,440 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2020-07-28T17:06:16,441 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2020-07-28T17:06:16,647 building extension "dadi.integration_c" sources 2020-07-28T17:06:16,649 f2py options: [] 2020-07-28T17:06:16,650 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c' to sources. 2020-07-28T17:06:16,651 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi' to include_dirs. 2020-07-28T17:06:16,651 building extension "dadi.DFE.PDFs_c" sources 2020-07-28T17:06:16,652 f2py options: [] 2020-07-28T17:06:16,653 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c' to sources. 2020-07-28T17:06:16,654 adding 'build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE' to include_dirs. 2020-07-28T17:06:16,655 build_src: building npy-pkg config files 2020-07-28T17:06:16,657 running build_py 2020-07-28T17:06:16,668 creating build/lib.linux-armv7l-3.7 2020-07-28T17:06:16,668 creating build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,671 copying dadi/__init__.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,676 copying dadi/Spectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,689 copying dadi/Numerics.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,698 copying dadi/Plotting.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,706 copying dadi/NLopt_mod.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,712 copying dadi/Misc.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,720 copying dadi/PhiManip.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,729 copying dadi/Demographics2D.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,734 copying dadi/Demographics1D.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,738 copying dadi/Inference.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,749 copying dadi/Godambe.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,757 copying dadi/Integration.py -> build/lib.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,769 creating build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,771 copying dadi/cuda/__init__.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,775 copying dadi/cuda/kernels.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,779 copying dadi/cuda/cusparse.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,786 copying dadi/cuda/Integration.py -> build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,798 creating build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,801 copying dadi/Triallele/__init__.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,805 copying dadi/Triallele/plotting.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,810 copying dadi/Triallele/demographics.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,815 copying dadi/Triallele/TriSpectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,821 copying dadi/Triallele/integration.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,828 copying dadi/Triallele/numerics.py -> build/lib.linux-armv7l-3.7/dadi/Triallele 2020-07-28T17:06:16,839 creating build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,841 copying dadi/TwoLocus/__init__.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,846 copying dadi/TwoLocus/plotting.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,851 copying dadi/TwoLocus/demographics.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,855 copying dadi/TwoLocus/TLSpectrum_mod.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,861 copying dadi/TwoLocus/inference.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,868 copying dadi/TwoLocus/integration.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,874 copying dadi/TwoLocus/numerics.py -> build/lib.linux-armv7l-3.7/dadi/TwoLocus 2020-07-28T17:06:16,887 creating build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,889 copying dadi/DFE/__init__.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,893 copying dadi/DFE/DemogSelModels.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,898 copying dadi/DFE/Plotting.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,903 copying dadi/DFE/Cache1D_mod.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,910 copying dadi/DFE/Cache2D_mod.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,917 copying dadi/DFE/PDFs.py -> build/lib.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:16,923 copying dadi/cuda/kernels.cu -> build/lib.linux-armv7l-3.7/dadi/cuda 2020-07-28T17:06:16,936 running build_ext 2020-07-28T17:06:16,984 customize UnixCCompiler 2020-07-28T17:06:16,988 customize UnixCCompiler using build_ext 2020-07-28T17:06:16,992 building 'dadi.tridiag' extension 2020-07-28T17:06:16,993 compiling C sources 2020-07-28T17:06:16,993 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2020-07-28T17:06:16,994 creating build/temp.linux-armv7l-3.7/build 2020-07-28T17:06:16,995 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2020-07-28T17:06:16,997 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:16,999 creating build/temp.linux-armv7l-3.7/dadi 2020-07-28T17:06:17,001 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build 2020-07-28T17:06:17,001 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7 2020-07-28T17:06:17,003 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi 2020-07-28T17:06:17,005 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2020-07-28T17:06:17,068 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/tridiagmodule.carm-linux-gnueabihf-gcc: dadi/tridiag.c 2020-07-28T17:06:17,069 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c 2020-07-28T17:06:17,791 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-07-28T17:06:17,792 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-07-28T17:06:17,792 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-07-28T17:06:17,793 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2020-07-28T17:06:17,794 from build/src.linux-armv7l-3.7/dadi/tridiagmodule.c:16: 2020-07-28T17:06:17,794 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-07-28T17:06:17,795 #warning "Using deprecated NumPy API, disable it with " \ 2020-07-28T17:06:17,795 ^~~~~~~ 2020-07-28T17:06:17,796 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-07-28T17:06:17,796 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-07-28T17:06:17,797 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-07-28T17:06:17,797 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2020-07-28T17:06:17,797 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.c:2: 2020-07-28T17:06:17,798 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-07-28T17:06:17,798 #warning "Using deprecated NumPy API, disable it with " \ 2020-07-28T17:06:17,799 ^~~~~~~ 2020-07-28T17:06:17,883 build/src.linux-armv7l-3.7/dadi/tridiagmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2020-07-28T17:06:17,884 static int f2py_size(PyArrayObject* var, ...) 2020-07-28T17:06:17,885 ^~~~~~~~~ 2020-07-28T17:06:19,924 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/tridiagmodule.o build/temp.linux-armv7l-3.7/dadi/tridiag.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so 2020-07-28T17:06:20,156 building 'dadi.integration_c' extension 2020-07-28T17:06:20,157 compiling C sources 2020-07-28T17:06:20,157 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2020-07-28T17:06:20,159 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2020-07-28T17:06:20,167 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/integration_cmodule.carm-linux-gnueabihf-gcc: dadi/integration1D.c 2020-07-28T17:06:20,168 arm-linux-gnueabihf-gcc: dadi/integration2D.c 2020-07-28T17:06:20,177 arm-linux-gnueabihf-gcc: dadi/integration3D.c 2020-07-28T17:06:20,711 arm-linux-gnueabihf-gcc: dadi/integration4D.c 2020-07-28T17:06:20,970 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-07-28T17:06:20,971 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-07-28T17:06:20,972 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-07-28T17:06:20,973 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.h:13, 2020-07-28T17:06:20,974 from build/src.linux-armv7l-3.7/dadi/integration_cmodule.c:16: 2020-07-28T17:06:20,975 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-07-28T17:06:20,976 #warning "Using deprecated NumPy API, disable it with " \ 2020-07-28T17:06:20,977 ^~~~~~~ 2020-07-28T17:06:21,217 arm-linux-gnueabihf-gcc: dadi/integration5D.c 2020-07-28T17:06:21,366 build/src.linux-armv7l-3.7/dadi/integration_cmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2020-07-28T17:06:21,367 static int f2py_size(PyArrayObject* var, ...) 2020-07-28T17:06:21,368 ^~~~~~~~~ 2020-07-28T17:06:21,994 arm-linux-gnueabihf-gcc: dadi/integration_shared.c 2020-07-28T17:06:26,739 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/integration_cmodule.o build/temp.linux-armv7l-3.7/dadi/integration1D.o build/temp.linux-armv7l-3.7/dadi/integration2D.o build/temp.linux-armv7l-3.7/dadi/integration3D.o build/temp.linux-armv7l-3.7/dadi/integration4D.o build/temp.linux-armv7l-3.7/dadi/integration5D.o build/temp.linux-armv7l-3.7/dadi/integration_shared.o build/temp.linux-armv7l-3.7/dadi/tridiag.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so 2020-07-28T17:06:27,033 building 'dadi.DFE.PDFs_c' extension 2020-07-28T17:06:27,034 compiling C sources 2020-07-28T17:06:27,035 C compiler: arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2020-07-28T17:06:27,037 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:27,041 creating build/temp.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:27,044 creating build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE 2020-07-28T17:06:27,046 compile options: '-Ibuild/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c' 2020-07-28T17:06:27,053 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c 2020-07-28T17:06:27,054 arm-linux-gnueabihf-gcc: build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.carm-linux-gnueabihf-gcc: dadi/DFE/PDFs.c 2020-07-28T17:06:27,262 dadi/DFE/PDFs.c:4: warning: "M_PI" redefined 2020-07-28T17:06:27,263 #define M_PI 3.14159265358979323846264338327950288 2020-07-28T17:06:27,265 In file included from dadi/DFE/PDFs.c:2: 2020-07-28T17:06:27,266 /usr/include/math.h:1065: note: this is the location of the previous definition 2020-07-28T17:06:27,267 # define M_PI 3.14159265358979323846 /* pi */ 2020-07-28T17:06:27,727 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-07-28T17:06:27,728 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-07-28T17:06:27,729 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-07-28T17:06:27,730 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.h:13, 2020-07-28T17:06:27,730 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.c:2: 2020-07-28T17:06:27,731 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-07-28T17:06:27,731 #warning "Using deprecated NumPy API, disable it with " \ 2020-07-28T17:06:27,731 ^~~~~~~ 2020-07-28T17:06:27,732 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2020-07-28T17:06:27,732 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2020-07-28T17:06:27,733 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2020-07-28T17:06:27,733 from build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.h:13, 2020-07-28T17:06:27,733 from build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c:16: 2020-07-28T17:06:27,734 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2020-07-28T17:06:27,734 #warning "Using deprecated NumPy API, disable it with " \ 2020-07-28T17:06:27,735 ^~~~~~~ 2020-07-28T17:06:27,816 build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.c:102:12: warning: ‘f2py_size’ defined but not used [-Wunused-function] 2020-07-28T17:06:27,817 static int f2py_size(PyArrayObject* var, ...) 2020-07-28T17:06:27,818 ^~~~~~~~~ 2020-07-28T17:06:29,854 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/PDFs_cmodule.o build/temp.linux-armv7l-3.7/dadi/DFE/PDFs.o build/temp.linux-armv7l-3.7/build/src.linux-armv7l-3.7/build/src.linux-armv7l-3.7/dadi/DFE/fortranobject.o -o build/lib.linux-armv7l-3.7/dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so 2020-07-28T17:06:30,079 installing to build/bdist.linux-armv7l/wheel 2020-07-28T17:06:30,080 running install 2020-07-28T17:06:30,081 running install_lib 2020-07-28T17:06:30,089 creating build/bdist.linux-armv7l 2020-07-28T17:06:30,091 creating build/bdist.linux-armv7l/wheel 2020-07-28T17:06:30,096 creating build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,100 creating build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,103 copying build/lib.linux-armv7l-3.7/dadi/cuda/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,108 copying build/lib.linux-armv7l-3.7/dadi/cuda/kernels.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,113 copying build/lib.linux-armv7l-3.7/dadi/cuda/kernels.cu -> build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,119 copying build/lib.linux-armv7l-3.7/dadi/cuda/cusparse.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,128 copying build/lib.linux-armv7l-3.7/dadi/cuda/Integration.py -> build/bdist.linux-armv7l/wheel/dadi/cuda 2020-07-28T17:06:30,141 creating build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,145 copying build/lib.linux-armv7l-3.7/dadi/Triallele/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,151 copying build/lib.linux-armv7l-3.7/dadi/Triallele/plotting.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,157 copying build/lib.linux-armv7l-3.7/dadi/Triallele/demographics.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,162 copying build/lib.linux-armv7l-3.7/dadi/Triallele/TriSpectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,170 copying build/lib.linux-armv7l-3.7/dadi/Triallele/integration.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,176 copying build/lib.linux-armv7l-3.7/dadi/Triallele/numerics.py -> build/bdist.linux-armv7l/wheel/dadi/Triallele 2020-07-28T17:06:30,183 copying build/lib.linux-armv7l-3.7/dadi/__init__.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,190 creating build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,193 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,200 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/plotting.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,208 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/demographics.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,214 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/TLSpectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,221 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/inference.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,228 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/integration.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,233 copying build/lib.linux-armv7l-3.7/dadi/TwoLocus/numerics.py -> build/bdist.linux-armv7l/wheel/dadi/TwoLocus 2020-07-28T17:06:30,245 copying build/lib.linux-armv7l-3.7/dadi/Spectrum_mod.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,261 copying build/lib.linux-armv7l-3.7/dadi/Numerics.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,272 copying build/lib.linux-armv7l-3.7/dadi/Plotting.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,280 copying build/lib.linux-armv7l-3.7/dadi/NLopt_mod.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,286 copying build/lib.linux-armv7l-3.7/dadi/Misc.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,294 copying build/lib.linux-armv7l-3.7/dadi/PhiManip.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,305 creating build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,308 copying build/lib.linux-armv7l-3.7/dadi/DFE/__init__.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,314 copying build/lib.linux-armv7l-3.7/dadi/DFE/DemogSelModels.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,321 copying build/lib.linux-armv7l-3.7/dadi/DFE/Plotting.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,330 copying build/lib.linux-armv7l-3.7/dadi/DFE/Cache1D_mod.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,336 copying build/lib.linux-armv7l-3.7/dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,354 copying build/lib.linux-armv7l-3.7/dadi/DFE/Cache2D_mod.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,364 copying build/lib.linux-armv7l-3.7/dadi/DFE/PDFs.py -> build/bdist.linux-armv7l/wheel/dadi/DFE 2020-07-28T17:06:30,370 copying build/lib.linux-armv7l-3.7/dadi/Demographics2D.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,375 copying build/lib.linux-armv7l-3.7/dadi/Demographics1D.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,380 copying build/lib.linux-armv7l-3.7/dadi/Inference.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,390 copying build/lib.linux-armv7l-3.7/dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,431 copying build/lib.linux-armv7l-3.7/dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,447 copying build/lib.linux-armv7l-3.7/dadi/Godambe.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,456 copying build/lib.linux-armv7l-3.7/dadi/Integration.py -> build/bdist.linux-armv7l/wheel/dadi 2020-07-28T17:06:30,466 running install_egg_info 2020-07-28T17:06:30,478 running egg_info 2020-07-28T17:06:30,491 writing dadi.egg-info/PKG-INFO 2020-07-28T17:06:30,496 writing dependency_links to dadi.egg-info/dependency_links.txt 2020-07-28T17:06:30,500 writing top-level names to dadi.egg-info/top_level.txt 2020-07-28T17:06:30,545 reading manifest file 'dadi.egg-info/SOURCES.txt' 2020-07-28T17:06:30,635 reading manifest template 'MANIFEST.in' 2020-07-28T17:06:30,788 warning: no files found matching 'manual.pdf' under directory 'doc' 2020-07-28T17:06:30,789 warning: no files found matching '*.tex' under directory 'doc' 2020-07-28T17:06:30,791 warning: no files found matching '*.bib' under directory 'doc' 2020-07-28T17:06:30,980 warning: no previously-included files matching '*.msout' found anywhere in distribution 2020-07-28T17:06:30,986 warning: no previously-included files matching '*.swp' found anywhere in distribution 2020-07-28T17:06:30,991 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2020-07-28T17:06:30,994 warning: no previously-included files matching 'seedms' found anywhere in distribution 2020-07-28T17:06:30,997 warning: no previously-included files matching '*.png' found anywhere in distribution 2020-07-28T17:06:30,1000 warning: no previously-included files matching '*.bpkl' found anywhere in distribution 2020-07-28T17:06:31,003 warning: no previously-included files matching '*.npz' found anywhere in distribution 2020-07-28T17:06:31,006 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-07-28T17:06:31,009 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2020-07-28T17:06:31,035 writing manifest file 'dadi.egg-info/SOURCES.txt' 2020-07-28T17:06:31,039 Copying dadi.egg-info to build/bdist.linux-armv7l/wheel/dadi-2.1.0-py3.7.egg-info 2020-07-28T17:06:31,060 running install_scripts 2020-07-28T17:06:31,061 running install_clib 2020-07-28T17:06:31,062 customize UnixCCompiler 2020-07-28T17:06:31,101 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2020-07-28T17:06:31,119 creating build/bdist.linux-armv7l/wheel/dadi-2.1.0.dist-info/WHEEL 2020-07-28T17:06:31,124 creating '/tmp/pip-wheel-w_gtz_ds/dadi-2.1.0-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-07-28T17:06:31,129 adding 'dadi/Demographics1D.py' 2020-07-28T17:06:31,132 adding 'dadi/Demographics2D.py' 2020-07-28T17:06:31,137 adding 'dadi/Godambe.py' 2020-07-28T17:06:31,146 adding 'dadi/Inference.py' 2020-07-28T17:06:31,155 adding 'dadi/Integration.py' 2020-07-28T17:06:31,163 adding 'dadi/Misc.py' 2020-07-28T17:06:31,166 adding 'dadi/NLopt_mod.py' 2020-07-28T17:06:31,174 adding 'dadi/Numerics.py' 2020-07-28T17:06:31,181 adding 'dadi/PhiManip.py' 2020-07-28T17:06:31,187 adding 'dadi/Plotting.py' 2020-07-28T17:06:31,206 adding 'dadi/Spectrum_mod.py' 2020-07-28T17:06:31,210 adding 'dadi/__init__.py' 2020-07-28T17:06:31,324 adding 'dadi/integration_c.cpython-37m-arm-linux-gnueabihf.so' 2020-07-28T17:06:31,368 adding 'dadi/tridiag.cpython-37m-arm-linux-gnueabihf.so' 2020-07-28T17:06:31,374 adding 'dadi/DFE/Cache1D_mod.py' 2020-07-28T17:06:31,379 adding 'dadi/DFE/Cache2D_mod.py' 2020-07-28T17:06:31,382 adding 'dadi/DFE/DemogSelModels.py' 2020-07-28T17:06:31,385 adding 'dadi/DFE/PDFs.py' 2020-07-28T17:06:31,426 adding 'dadi/DFE/PDFs_c.cpython-37m-arm-linux-gnueabihf.so' 2020-07-28T17:06:31,431 adding 'dadi/DFE/Plotting.py' 2020-07-28T17:06:31,433 adding 'dadi/DFE/__init__.py' 2020-07-28T17:06:31,440 adding 'dadi/Triallele/TriSpectrum_mod.py' 2020-07-28T17:06:31,442 adding 'dadi/Triallele/__init__.py' 2020-07-28T17:06:31,445 adding 'dadi/Triallele/demographics.py' 2020-07-28T17:06:31,448 adding 'dadi/Triallele/integration.py' 2020-07-28T17:06:31,454 adding 'dadi/Triallele/numerics.py' 2020-07-28T17:06:31,458 adding 'dadi/Triallele/plotting.py' 2020-07-28T17:06:31,463 adding 'dadi/TwoLocus/TLSpectrum_mod.py' 2020-07-28T17:06:31,466 adding 'dadi/TwoLocus/__init__.py' 2020-07-28T17:06:31,468 adding 'dadi/TwoLocus/demographics.py' 2020-07-28T17:06:31,472 adding 'dadi/TwoLocus/inference.py' 2020-07-28T17:06:31,475 adding 'dadi/TwoLocus/integration.py' 2020-07-28T17:06:31,487 adding 'dadi/TwoLocus/numerics.py' 2020-07-28T17:06:31,491 adding 'dadi/TwoLocus/plotting.py' 2020-07-28T17:06:31,499 adding 'dadi/cuda/Integration.py' 2020-07-28T17:06:31,502 adding 'dadi/cuda/__init__.py' 2020-07-28T17:06:31,506 adding 'dadi/cuda/cusparse.py' 2020-07-28T17:06:31,509 adding 'dadi/cuda/kernels.cu' 2020-07-28T17:06:31,511 adding 'dadi/cuda/kernels.py' 2020-07-28T17:06:31,516 adding 'dadi-2.1.0.dist-info/LICENSE.txt' 2020-07-28T17:06:31,518 adding 'dadi-2.1.0.dist-info/METADATA' 2020-07-28T17:06:31,520 adding 'dadi-2.1.0.dist-info/WHEEL' 2020-07-28T17:06:31,522 adding 'dadi-2.1.0.dist-info/top_level.txt' 2020-07-28T17:06:31,524 adding 'dadi-2.1.0.dist-info/RECORD' 2020-07-28T17:06:31,561 removing build/bdist.linux-armv7l/wheel 2020-07-28T17:06:31,850 Building wheel for dadi (setup.py): finished with status 'done' 2020-07-28T17:06:31,860 Created wheel for dadi: filename=dadi-2.1.0-cp37-cp37m-linux_armv7l.whl size=393556 sha256=fce46a4fb7ce4029ec332287307a3b5a746ca21d44a4ec78ab4fa0355db10a8d 2020-07-28T17:06:31,861 Stored in directory: /tmp/pip-ephem-wheel-cache-4rga2as5/wheels/9c/cb/a9/1b6c02a454ee1457f17f39cef4946cea985b886affdc519a56 2020-07-28T17:06:31,864 Successfully built dadi 2020-07-28T17:06:31,940 Removed build tracker: '/tmp/pip-req-tracker-g6axlxkr'