2020-07-29T15:01:54,852 Created temporary directory: /tmp/pip-ephem-wheel-cache-nvwol7on
2020-07-29T15:01:54,856 Created temporary directory: /tmp/pip-req-tracker-bl6ygto3
2020-07-29T15:01:54,857 Initialized build tracking at /tmp/pip-req-tracker-bl6ygto3
2020-07-29T15:01:54,859 Created build tracker: /tmp/pip-req-tracker-bl6ygto3
2020-07-29T15:01:54,859 Entered build tracker: /tmp/pip-req-tracker-bl6ygto3
2020-07-29T15:01:54,861 Created temporary directory: /tmp/pip-wheel-kmecxx_x
2020-07-29T15:01:54,876 1 location(s) to search for versions of refgenie:
2020-07-29T15:01:54,876 * https://pypi.org/simple/refgenie/
2020-07-29T15:01:54,877 Fetching project page and analyzing links: https://pypi.org/simple/refgenie/
2020-07-29T15:01:54,879 Getting page https://pypi.org/simple/refgenie/
2020-07-29T15:01:54,883 Found index url https://pypi.org/simple
2020-07-29T15:01:55,277   Found link https://files.pythonhosted.org/packages/17/54/a0cc0afa24f558e0be77f717080c10e371750e79ffb1ac501485ca4fdfea/refgenie-0.0.1.tar.gz#sha256=71d69e2c21b08e59c68c1ef46c41542faca4e91efbb46a5745e3b3e5e199882e (from https://pypi.org/simple/refgenie/), version: 0.0.1
2020-07-29T15:01:55,278   Found link https://files.pythonhosted.org/packages/d9/ba/078d0aaadb0f9a93e9db100b377680c6308f24eef02e5b2c68376a6f4d34/refgenie-0.3.0.tar.gz#sha256=167e78d6dc3071c42ea651bdad6a8438f7b99b285a631ec79a6718ffa0ec07d1 (from https://pypi.org/simple/refgenie/), version: 0.3.0
2020-07-29T15:01:55,279   Found link https://files.pythonhosted.org/packages/b4/22/f4d122acae18ccda74ffbc4bd9e4b02aae9d6fa0dd34f0abed84abf815da/refgenie-0.3.1.tar.gz#sha256=7acd535abaaa519d793fa3286dd03c14e65d34590d2c6bf273a108fcf07c943b (from https://pypi.org/simple/refgenie/), version: 0.3.1
2020-07-29T15:01:55,280   Found link https://files.pythonhosted.org/packages/e6/11/e570020cef6b691bf9f2b040d18b5fed4536972b31a0bcb4ce3e7be5c2b5/refgenie-0.3.2.tar.gz#sha256=27bdf63883dc46debeb65713271247ced4276801c15c21390b9a07a34a983dd8 (from https://pypi.org/simple/refgenie/), version: 0.3.2
2020-07-29T15:01:55,281   Found link https://files.pythonhosted.org/packages/f5/7c/baccfeed0ab702f60f27f29801089de8744793233e7e9acdcc0762f5dbe1/refgenie-0.4.0.tar.gz#sha256=aa4fb08141f881431d21eab5be1b2442aaeab385916b2a9299f2333765286b57 (from https://pypi.org/simple/refgenie/), version: 0.4.0
2020-07-29T15:01:55,282   Found link https://files.pythonhosted.org/packages/d2/01/2ef4810d4bbfae03bfc83ec42fcad0889d266bdb07145cd15b07cec010fc/refgenie-0.4.1.tar.gz#sha256=45b3aaf1cf4cc09f36faeb39ac6aff4a80087379f4a90da36cbca8f0a9be7af4 (from https://pypi.org/simple/refgenie/), version: 0.4.1
2020-07-29T15:01:55,283   Found link https://files.pythonhosted.org/packages/72/e8/bcdd841edaa175dca9baff44dfe19cfa9d657266695413453c7fa3750040/refgenie-0.4.2.tar.gz#sha256=970132fa7d93b42457e9bffed9dceb816d0b8033825054e73da8c055d93cd326 (from https://pypi.org/simple/refgenie/), version: 0.4.2
2020-07-29T15:01:55,283   Found link https://files.pythonhosted.org/packages/eb/0b/0f524131a16ed7f61525207b33961195a024c02b297945e0b8a2e1e00610/refgenie-0.4.3.tar.gz#sha256=1b58f786ec82a9b2504f809d903f012e283758148ed94fdc430adbcbe7794f71 (from https://pypi.org/simple/refgenie/), version: 0.4.3
2020-07-29T15:01:55,284   Found link https://files.pythonhosted.org/packages/70/83/55da1456345a0aa79188f7dbe5fc40cc926b218c969d371aa91cde4857e4/refgenie-0.4.4.tar.gz#sha256=89d7edcb304a3ca966b158748d366e9e12fdc1ce296b3397d16c6f65eaf7d25b (from https://pypi.org/simple/refgenie/), version: 0.4.4
2020-07-29T15:01:55,285   Found link https://files.pythonhosted.org/packages/8a/0e/6e3bdf10a74967c5f6a3724c39ac558579037784b7980753ac39fdf17e35/refgenie-0.5.0.tar.gz#sha256=b8cc4675eabc4b74e60c438fe263aa63bbf96561ba1f19b2d3818e5cdf4bad14 (from https://pypi.org/simple/refgenie/), version: 0.5.0
2020-07-29T15:01:55,286   Found link https://files.pythonhosted.org/packages/65/98/f8e654ecf4c3f151d7b2ff7a7d8fbbd5f25de1a6b4d32e5c9897910d2ae6/refgenie-0.6.0.tar.gz#sha256=585feade22c891a9f98d3e8e0d4f666696af6ae941c3e5731e438956e35a7877 (from https://pypi.org/simple/refgenie/), version: 0.6.0
2020-07-29T15:01:55,287   Found link https://files.pythonhosted.org/packages/c3/e1/1d9fcb262828ca2f82dd12aae59af7816059abfffbb0021128fdf9a9b5fb/refgenie-0.7.0.tar.gz#sha256=75cb7a9412d4e93b933989602939f79fff5c8910bec2651ad0f7f97dc7d57de5 (from https://pypi.org/simple/refgenie/), version: 0.7.0
2020-07-29T15:01:55,288   Found link https://files.pythonhosted.org/packages/a6/ea/cd1485a9f10db3b79601088efaf3929858813f46c906548ba47f0dcab9a6/refgenie-0.7.1.tar.gz#sha256=1d391357b82f9e05a71b945666c33c013e6ef2207a0e794ee33f602f433916ad (from https://pypi.org/simple/refgenie/), version: 0.7.1
2020-07-29T15:01:55,288   Found link https://files.pythonhosted.org/packages/b2/19/d8233d168bc5f5dfb189bca53165dcb3120e1ca120a18a3f8f89727a5106/refgenie-0.7.2.tar.gz#sha256=5f2a57c41bbb9eba549757df57c533b9b98c7c3cc7feb0cc04a670a15291405b (from https://pypi.org/simple/refgenie/), version: 0.7.2
2020-07-29T15:01:55,289   Found link https://files.pythonhosted.org/packages/03/46/91c1cf4d4cee5d4caaf83337c4d1246b283e7abf389fdb2486109acb7b03/refgenie-0.8.0.tar.gz#sha256=70fbaad444149f10f1153588399a67254d1f3f39b1505d48b5f77e3457aa9c24 (from https://pypi.org/simple/refgenie/), version: 0.8.0
2020-07-29T15:01:55,290   Found link https://files.pythonhosted.org/packages/c3/65/11c4c959aa5cfeb06b90023bd09da1d2ea22b07f8c311bb560da8ac5306f/refgenie-0.8.1.tar.gz#sha256=4f507780c08809fbfd64554f76fa17e6bc83b76f0612767a487a62e8b827aa38 (from https://pypi.org/simple/refgenie/), version: 0.8.1
2020-07-29T15:01:55,291   Found link https://files.pythonhosted.org/packages/83/66/1d9fc71cbbb381300081d3a050e9c16bdc719c19dd6964d46c58555f8b9e/refgenie-0.8.2.tar.gz#sha256=dca32279f3021fe7a5318b834cb9e5c36eda12a6d86f99f01ee174ebe79de60c (from https://pypi.org/simple/refgenie/), version: 0.8.2
2020-07-29T15:01:55,292   Found link https://files.pythonhosted.org/packages/96/5a/918928e5e45c2b98065ab2019406ef16dc592099c01f5ff64effc6cf0f3b/refgenie-0.9.0.tar.gz#sha256=160e275f5f30026b74ec87732d012215426df09d183cd77a761813ec0b4ff549 (from https://pypi.org/simple/refgenie/), version: 0.9.0
2020-07-29T15:01:55,292   Found link https://files.pythonhosted.org/packages/de/0d/49c66c81875cd70d2dd98c26bfa5be7e12ae324929e8f1be6ce3015e653a/refgenie-0.9.1.tar.gz#sha256=e5e669c7d158659163073fa9c4140fc2aff3c7d7d681c0a26e5358a977412593 (from https://pypi.org/simple/refgenie/), version: 0.9.1
2020-07-29T15:01:55,293   Skipping link: No binaries permitted for refgenie: https://files.pythonhosted.org/packages/7b/40/a537d12b74e73cef6e6d723575180f751d67c9b8eea5bd47f037730f1a32/refgenie-0.9.2-py3-none-any.whl#sha256=102542a368e33ea6b38ee617cf18c2350d86a19cabd77198f049b437822370d5 (from https://pypi.org/simple/refgenie/)
2020-07-29T15:01:55,294   Found link https://files.pythonhosted.org/packages/ce/b3/769fb039c3cd2a5c5f8d0b7f44c5a5ae9b85e3ed69989ff850c114eb1da8/refgenie-0.9.2.tar.gz#sha256=bd1e4d7723c57288311d1afe9898542943303378095cf2bc9c2ba80f090f2dd9 (from https://pypi.org/simple/refgenie/), version: 0.9.2
2020-07-29T15:01:55,295   Skipping link: No binaries permitted for refgenie: https://files.pythonhosted.org/packages/af/52/c1e1bc63b3543f591ebdf44caccfaab3c730708256d926b9f4b1c34d1865/refgenie-0.9.3-py3-none-any.whl#sha256=8fe14966820157f75d1c326eb0e0f5a6bf2754a2c45a0271456bbfc99839601e (from https://pypi.org/simple/refgenie/)
2020-07-29T15:01:55,295   Found link https://files.pythonhosted.org/packages/17/42/ebffd05ebee556b96a781dbb640e8af0267256a46a497ba36c717a8cb301/refgenie-0.9.3.tar.gz#sha256=ee4791b5d38909ad45053e31213db23e1b871108ab2b21521ea70327fa8d1e63 (from https://pypi.org/simple/refgenie/), version: 0.9.3
2020-07-29T15:01:55,315 Given no hashes to check 1 links for project 'refgenie': discarding no candidates
2020-07-29T15:01:55,317 Using version 0.9.3 (newest of versions: 0.9.3)
2020-07-29T15:01:55,324 Collecting refgenie==0.9.3
2020-07-29T15:01:55,328   Created temporary directory: /tmp/pip-unpack-qjjowe9g
2020-07-29T15:01:55,552   Downloading refgenie-0.9.3.tar.gz (29 kB)
2020-07-29T15:01:55,743   Added refgenie==0.9.3 from https://files.pythonhosted.org/packages/17/42/ebffd05ebee556b96a781dbb640e8af0267256a46a497ba36c717a8cb301/refgenie-0.9.3.tar.gz#sha256=ee4791b5d38909ad45053e31213db23e1b871108ab2b21521ea70327fa8d1e63 to build tracker '/tmp/pip-req-tracker-bl6ygto3'
2020-07-29T15:01:55,747     Running setup.py (path:/tmp/pip-wheel-kmecxx_x/refgenie/setup.py) egg_info for package refgenie
2020-07-29T15:01:55,749     Created temporary directory: /tmp/pip-pip-egg-info-j5_uhhif
2020-07-29T15:01:55,750     Running command python setup.py egg_info
2020-07-29T15:02:00,771     running egg_info
2020-07-29T15:02:00,778     creating /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info
2020-07-29T15:02:00,782     writing dependency_links to /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/dependency_links.txt
2020-07-29T15:02:00,785     writing requirements to /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/requires.txt
2020-07-29T15:02:00,788     writing top-level names to /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/top_level.txt
2020-07-29T15:02:00,792     writing entry points to /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/entry_points.txt
2020-07-29T15:02:00,795     writing /tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/PKG-INFO
2020-07-29T15:02:00,801     writing manifest file '/tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/SOURCES.txt'
2020-07-29T15:02:01,149     reading manifest file '/tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/SOURCES.txt'
2020-07-29T15:02:01,153     reading manifest template 'MANIFEST.in'
2020-07-29T15:02:01,165     writing manifest file '/tmp/pip-pip-egg-info-j5_uhhif/refgenie.egg-info/SOURCES.txt'
2020-07-29T15:02:01,168     Pandoc conversion succeeded.
2020-07-29T15:02:01,316   Source in /tmp/pip-wheel-kmecxx_x/refgenie has version 0.9.3, which satisfies requirement refgenie==0.9.3 from https://files.pythonhosted.org/packages/17/42/ebffd05ebee556b96a781dbb640e8af0267256a46a497ba36c717a8cb301/refgenie-0.9.3.tar.gz#sha256=ee4791b5d38909ad45053e31213db23e1b871108ab2b21521ea70327fa8d1e63
2020-07-29T15:02:01,318   Removed refgenie==0.9.3 from https://files.pythonhosted.org/packages/17/42/ebffd05ebee556b96a781dbb640e8af0267256a46a497ba36c717a8cb301/refgenie-0.9.3.tar.gz#sha256=ee4791b5d38909ad45053e31213db23e1b871108ab2b21521ea70327fa8d1e63 from build tracker '/tmp/pip-req-tracker-bl6ygto3'
2020-07-29T15:02:01,322 Building wheels for collected packages: refgenie
2020-07-29T15:02:01,331   Created temporary directory: /tmp/pip-wheel-okd_pf6i
2020-07-29T15:02:01,332   Building wheel for refgenie (setup.py): started
2020-07-29T15:02:01,333   Destination directory: /tmp/pip-wheel-okd_pf6i
2020-07-29T15:02:01,333   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-kmecxx_x/refgenie/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-kmecxx_x/refgenie/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-okd_pf6i
2020-07-29T15:02:03,873   running bdist_wheel
2020-07-29T15:02:03,890   running build
2020-07-29T15:02:03,891   running build_py
2020-07-29T15:02:04,229   creating build
2020-07-29T15:02:04,230   creating build/lib
2020-07-29T15:02:04,231   creating build/lib/refgenie
2020-07-29T15:02:04,234   copying refgenie/refgenie.py -> build/lib/refgenie
2020-07-29T15:02:04,242   copying refgenie/__main__.py -> build/lib/refgenie
2020-07-29T15:02:04,246   copying refgenie/build_all_genome.py -> build/lib/refgenie
2020-07-29T15:02:04,250   copying refgenie/exceptions.py -> build/lib/refgenie
2020-07-29T15:02:04,254   copying refgenie/__init__.py -> build/lib/refgenie
2020-07-29T15:02:04,257   copying refgenie/asset_build_packages.py -> build/lib/refgenie
2020-07-29T15:02:04,265   copying refgenie/refget.py -> build/lib/refgenie
2020-07-29T15:02:04,270   copying refgenie/_version.py -> build/lib/refgenie
2020-07-29T15:02:04,275   copying refgenie/add_assets_igenome.py -> build/lib/refgenie
2020-07-29T15:02:04,281   copying refgenie/const.py -> build/lib/refgenie
2020-07-29T15:02:04,285   running egg_info
2020-07-29T15:02:04,319   writing requirements to refgenie.egg-info/requires.txt
2020-07-29T15:02:04,322   writing refgenie.egg-info/PKG-INFO
2020-07-29T15:02:04,327   writing entry points to refgenie.egg-info/entry_points.txt
2020-07-29T15:02:04,329   writing dependency_links to refgenie.egg-info/dependency_links.txt
2020-07-29T15:02:04,331   writing top-level names to refgenie.egg-info/top_level.txt
2020-07-29T15:02:04,341   reading manifest file 'refgenie.egg-info/SOURCES.txt'
2020-07-29T15:02:04,346   reading manifest template 'MANIFEST.in'
2020-07-29T15:02:04,356   writing manifest file 'refgenie.egg-info/SOURCES.txt'
2020-07-29T15:02:04,361   copying refgenie/refgenie.yaml -> build/lib/refgenie
2020-07-29T15:02:04,366   /usr/local/lib/python3.5/dist-packages/setuptools/lib2to3_ex.py:44: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
2020-07-29T15:02:04,366     SetuptoolsDeprecationWarning)
2020-07-29T15:02:04,367   Fixing build/lib/refgenie/refgenie.py build/lib/refgenie/__main__.py build/lib/refgenie/build_all_genome.py build/lib/refgenie/exceptions.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/refget.py build/lib/refgenie/_version.py build/lib/refgenie/add_assets_igenome.py build/lib/refgenie/const.py
2020-07-29T15:02:04,509   Skipping optional fixer: buffer
2020-07-29T15:02:04,901   Skipping optional fixer: idioms
2020-07-29T15:02:05,779   Skipping optional fixer: set_literal
2020-07-29T15:02:06,253   Skipping optional fixer: ws_comma
2020-07-29T15:02:12,176   Fixing build/lib/refgenie/refgenie.py build/lib/refgenie/__main__.py build/lib/refgenie/build_all_genome.py build/lib/refgenie/exceptions.py build/lib/refgenie/__init__.py build/lib/refgenie/asset_build_packages.py build/lib/refgenie/refget.py build/lib/refgenie/_version.py build/lib/refgenie/add_assets_igenome.py build/lib/refgenie/const.py
2020-07-29T15:02:12,271   Skipping optional fixer: buffer
2020-07-29T15:02:12,606   Skipping optional fixer: idioms
2020-07-29T15:02:13,597   Skipping optional fixer: set_literal
2020-07-29T15:02:13,994   Skipping optional fixer: ws_comma
2020-07-29T15:02:14,616   installing to build/bdist.linux-armv7l/wheel
2020-07-29T15:02:14,617   running install
2020-07-29T15:02:14,619   running install_lib
2020-07-29T15:02:14,627   creating build/bdist.linux-armv7l
2020-07-29T15:02:14,628   creating build/bdist.linux-armv7l/wheel
2020-07-29T15:02:14,631   creating build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,634   copying build/lib/refgenie/refgenie.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,642   copying build/lib/refgenie/__main__.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,645   copying build/lib/refgenie/build_all_genome.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,650   copying build/lib/refgenie/exceptions.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,654   copying build/lib/refgenie/refgenie.yaml -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,660   copying build/lib/refgenie/__init__.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,664   copying build/lib/refgenie/asset_build_packages.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,672   copying build/lib/refgenie/refget.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,675   copying build/lib/refgenie/_version.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,679   copying build/lib/refgenie/add_assets_igenome.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,683   copying build/lib/refgenie/const.py -> build/bdist.linux-armv7l/wheel/refgenie
2020-07-29T15:02:14,686   running install_egg_info
2020-07-29T15:02:14,710   Copying refgenie.egg-info to build/bdist.linux-armv7l/wheel/refgenie-0.9.3-py3.5.egg-info
2020-07-29T15:02:14,742   running install_scripts
2020-07-29T15:02:14,875   creating build/bdist.linux-armv7l/wheel/refgenie-0.9.3.dist-info/WHEEL
2020-07-29T15:02:14,972   Pandoc conversion succeeded.
2020-07-29T15:02:15,185   Building wheel for refgenie (setup.py): finished with status 'done'
2020-07-29T15:02:15,189   Created wheel for refgenie: filename=refgenie-0.9.3-py3-none-any.whl size=27500 sha256=76a1cab4d13f66dd4c4b5040cd771ab4826eea2df0ec94f3b1e14d7585d43460
2020-07-29T15:02:15,190   Stored in directory: /tmp/pip-ephem-wheel-cache-nvwol7on/wheels/fd/0f/3a/2c200abd2ff7305b43f075f0277cb3584b7f9f0a4e41c4a078
2020-07-29T15:02:15,194 Successfully built refgenie
2020-07-29T15:02:15,206 Removed build tracker: '/tmp/pip-req-tracker-bl6ygto3'