2020-07-30T15:58:52,471 Created temporary directory: /tmp/pip-ephem-wheel-cache-hvlql7s4 2020-07-30T15:58:52,475 Created temporary directory: /tmp/pip-req-tracker-d9e7axk6 2020-07-30T15:58:52,475 Initialized build tracking at /tmp/pip-req-tracker-d9e7axk6 2020-07-30T15:58:52,476 Created build tracker: /tmp/pip-req-tracker-d9e7axk6 2020-07-30T15:58:52,476 Entered build tracker: /tmp/pip-req-tracker-d9e7axk6 2020-07-30T15:58:52,478 Created temporary directory: /tmp/pip-wheel-414_3jy0 2020-07-30T15:58:52,494 1 location(s) to search for versions of pyobo: 2020-07-30T15:58:52,494 * https://pypi.org/simple/pyobo/ 2020-07-30T15:58:52,495 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/ 2020-07-30T15:58:52,496 Getting page https://pypi.org/simple/pyobo/ 2020-07-30T15:58:52,499 Found index url https://pypi.org/simple 2020-07-30T15:58:52,741 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2020-07-30T15:58:52,743 Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz#sha256=9fb4e320e19a802e3e97f2829d7cee4adfb324cccc8103c8abdf70148ace754b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1 2020-07-30T15:58:52,743 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl#sha256=4786be08595237409c6a2895c339ada4dba0a17f8e1212caa94b8a5c3d0c5f22 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,745 Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz#sha256=062fd78150d328133a011fe086a3b4567a30e6fdadbb0857fd0963cac5c388e0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2 2020-07-30T15:58:52,745 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/30/c1/4c7e619de5335d05a503530dbff450dbb3ba10b2e50775308f23edc62dc4/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,746 Found link https://files.pythonhosted.org/packages/6d/60/0378905c3a343db9d89179bcb84f0c8d29387d7c322fab2aa73f7b4734d2/pyobo-0.0.3.tar.gz#sha256=f451cd4382ee65a9ec22e516e7faf633f940d1f3aff972cc9d74dd17007c1215 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.3 2020-07-30T15:58:52,747 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/b3/3ce0c93c64fbc62a618c2a84892503ac438e2e4008c58c737401b1fac69c/pyobo-0.0.4-py3-none-any.whl#sha256=c85b32484262f90bffa2fc2e8ff832b044ec28aa7bee288c54f5ee28b898de5b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,748 Found link https://files.pythonhosted.org/packages/3a/77/399811b835d969bfb9ca11665192feb3d77ccdc814df1cb3a55de8ee6703/pyobo-0.0.4.tar.gz#sha256=98a73ff6fcd8a25f300e3c13e22770b95de3b75547d8acacfa3d4d43386c9596 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.4 2020-07-30T15:58:52,748 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/75/bc/9494351b989734fff9c48c8f78d8588c1cbd45a30504ce0db3bf8c4d24f3/pyobo-0.0.5-py3-none-any.whl#sha256=46f573a41f6d6c5b55c18fdb0e8b27d02aaa81c534f38d79cf18e66cfeb176cb (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,749 Found link https://files.pythonhosted.org/packages/d8/4d/6a4352fbdd9826bae90c9745ad7e2a2dda0982b266e5ebad41c3a68259a0/pyobo-0.0.5.tar.gz#sha256=dd983142befe5c4b175af3457f4cfd29704a03532c3eb575bd95a2a0907768c2 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.5 2020-07-30T15:58:52,750 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/73/45/0b78d73ff6f0b3a2f45db53d02d2761f4785b7abc3894b01859061f24313/pyobo-0.0.6-py3-none-any.whl#sha256=197133cf87ddf12a4c76b2d6e82d1f543aacde6cb66b090bc13ea3a2619622ea (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,751 Found link https://files.pythonhosted.org/packages/61/98/486dadecc83fbbd5d49648dd09a0d05d91501f4a7be461ba37a37fd711b6/pyobo-0.0.6.tar.gz#sha256=98b4fee0543fc0a00da34eeb2f3d888f8120c5ac796300de0c5dc12fee3f6bfd (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.6 2020-07-30T15:58:52,752 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d4/f1/e5fc418924c64b351b73a1ab496e98530033d285fd2bba61a31e17819833/pyobo-0.0.7-py3-none-any.whl#sha256=a60c825ee223c9578f47e948e3634fffe3b8f22e38d57b4020134a943d7769b1 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,753 Found link https://files.pythonhosted.org/packages/7f/43/adfd5d951cbbf3a90f721a031d0236de5ed4eafa9986e070243f21708c27/pyobo-0.0.7.tar.gz#sha256=5f919500e2702b52d28e189b20c1cd082f62035174d2326929bdf33fa8ccdab0 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.7 2020-07-30T15:58:52,753 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/f1/64/a51f3a9afc7a8b48df5e12260a97147770c7a01cde9bea622ec1542b679b/pyobo-0.1.0-py3-none-any.whl#sha256=67d9dd1ddc5183ccf9e89c8b95949905cadc45af7c8f407e45e091c58e502b27 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,754 Found link https://files.pythonhosted.org/packages/d7/87/9df6babfd05066e6b3053c2cc2e84cde0bcb51f0dfb3d84644c4887338d4/pyobo-0.1.0.tar.gz#sha256=f287c0f903fec64fc4d0c262ec668c83ffd2962197d9bd658f43b3b7c399fea6 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.0 2020-07-30T15:58:52,755 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/16/13/e4c80bcce8ecf7a0b87c82e510655799d58700b589a666d0af1561bbe4e7/pyobo-0.1.1-py3-none-any.whl#sha256=c64623e7d677d19ab21f7af2d68bd914fea72535b586fa4f5872cdfed96af59a (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,755 Found link https://files.pythonhosted.org/packages/64/ef/56ba6c14369ab67be4a3eb1a5fa5f5c5f95da2f76efc83fa742b47fdfd96/pyobo-0.1.1.tar.gz#sha256=c7da6b2c489f67a01725c3db9d3a20d4f1855f6f9db59051f76778aa771c967e (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.1 2020-07-30T15:58:52,756 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/c8/c9/40d1461f8009f21f300a120cbe42c85f2749757140d16195517d53506301/pyobo-0.1.2-py3-none-any.whl#sha256=e892fb1cb617ee242b72302278b48eff77351e908e6da0a5de8de17222e4430b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,757 Found link https://files.pythonhosted.org/packages/b7/57/8d5eda3353620cfe3984ca65d32a2b6d4d445412224c470991ecc76ed04a/pyobo-0.1.2.tar.gz#sha256=b2cb72e61258e5377051336a6b3d1f8d431bd90412caf2d118d20f1f9ab50a06 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.2 2020-07-30T15:58:52,758 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/35/87/944b0f8de93ee584e8a20aa2ddc5b354ef7c5fa92e559e2f3cc8a07a2448/pyobo-0.1.3-py3-none-any.whl#sha256=8ea5201a61a52dfd357805e594b44b5281352230aa05da7b8a3e24102df4735b (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,758 Found link https://files.pythonhosted.org/packages/55/54/ecd223332080bbca4d4944ca95bd656c3dddecac2045c6f1f6a4545ea178/pyobo-0.1.3.tar.gz#sha256=eae0c0fb82fb1cef414c76a70697029460f82f8eea5333ebff7b74c1225d0198 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.3 2020-07-30T15:58:52,759 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d7/34/13786f9e7e7ccec946d970eed81d08e859c3386afb58fd19c4fee8e41b1d/pyobo-0.2.0-py3-none-any.whl#sha256=23a402a8b63af2e682ae5465b81aad380bee4147181c6b0a5f3af39db7feb408 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2020-07-30T15:58:52,760 Found link https://files.pythonhosted.org/packages/a7/60/0ccaa58ebdba394749de119cf995e296338b14e9743d0be670ee7f4ef6fb/pyobo-0.2.0.tar.gz#sha256=1c1ce9d5cf37b9351d5d24b0d9c240a041b1b58420ecebaf86265b1bbd5ec8f5 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.2.0 2020-07-30T15:58:52,761 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/e7/36/1678b56f494a8cfe35516c3eb1f059e3438e2356238c53c0855f78b46db4/pyobo-0.2.1-py3-none-any.whl#sha256=de56eeabe9dbe4c72c9515919eeaf4221f33a4a0648982f211b8ea796ec4c915 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,762 Found link https://files.pythonhosted.org/packages/4a/2d/d1418fbea18fba95a005be6aa94b5ad5865d21308df1fa1f69fda80f2624/pyobo-0.2.1.tar.gz#sha256=26a6b27e185caa1e5f49f06a30914a5a21060fa987429cecba1fca953f6142e8 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.1 2020-07-30T15:58:52,762 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/74/86/85176fa9587fb42a17fa7d942fd3e7513228838d8da1b8ccd4d92b61c495/pyobo-0.2.2-py3-none-any.whl#sha256=4b4a5928e623a34f8e1a070997d68828028c35482519e10e01c1d38a4013debd (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,763 Found link https://files.pythonhosted.org/packages/43/15/9e745fbc81bf514d1ebb5d75cf0a9c413e85668d29dc198617511135842a/pyobo-0.2.2.tar.gz#sha256=07dcacaa30e674ef1276cd377497b2a333e19ec2873fb270e6aeeeeb3a9baf39 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.2 2020-07-30T15:58:52,764 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/52/b9/c6ac012e8f2ff75cb695ed9fa24b2b6e5627c4ad5e120b81e439309799e9/pyobo-0.2.3-py3-none-any.whl#sha256=0f5eae6073fb535116b3a954c2f1b79f04e42c8652613f7169a4c880beb59703 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,765 Found link https://files.pythonhosted.org/packages/c1/c6/3c8f9ddbd162dde3f32dcce31cf3874cb2252b4fd800547410234f1dcfd1/pyobo-0.2.3.tar.gz#sha256=b2e4bf893a7533c3853f96daa4a8ee92f6d2f1fa623874d4f2356025c1c05215 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.3 2020-07-30T15:58:52,765 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/60/fb/68a66841d481f2c965ec1fbe5e5d51f815ad0e63b7dbeb697dc8f8c6bde8/pyobo-0.2.4-py3-none-any.whl#sha256=a0e71c39feb74581691e3df72ad582200598361372d41720348af54bc8c2072f (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,766 Found link https://files.pythonhosted.org/packages/17/72/9da15b783fda89d16e6b4e1b3002b1edef6a65258e8fb639609c0d3dfb41/pyobo-0.2.4.tar.gz#sha256=57655af513402063c9f63afa99b720953866dad798d480825a8df89358aa1f86 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.4 2020-07-30T15:58:52,767 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/03/40/0132f29aa34cdc8d3d625017621979f0cc783ce9f80d8cb04370417c6eb3/pyobo-0.2.5-py3-none-any.whl#sha256=66782a7742a825b2a7f5fc54b37924552699ec9bbd503dbf63b1c6a080f94333 (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2020-07-30T15:58:52,768 Found link https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz#sha256=fc4c20686de6003e7e3aad1dea2a409495b61438a5fe82a76380861e02e76d6e (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.5 2020-07-30T15:58:52,780 Given no hashes to check 1 links for project 'pyobo': discarding no candidates 2020-07-30T15:58:52,782 Using version 0.2.5 (newest of versions: 0.2.5) 2020-07-30T15:58:52,787 Collecting pyobo==0.2.5 2020-07-30T15:58:52,791 Created temporary directory: /tmp/pip-unpack-46tqaq74 2020-07-30T15:58:53,005 Downloading pyobo-0.2.5.tar.gz (351 kB) 2020-07-30T15:58:54,151 Added pyobo==0.2.5 from https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz#sha256=fc4c20686de6003e7e3aad1dea2a409495b61438a5fe82a76380861e02e76d6e to build tracker '/tmp/pip-req-tracker-d9e7axk6' 2020-07-30T15:58:54,154 Running setup.py (path:/tmp/pip-wheel-414_3jy0/pyobo/setup.py) egg_info for package pyobo 2020-07-30T15:58:54,156 Created temporary directory: /tmp/pip-pip-egg-info-g8fmyq9c 2020-07-30T15:58:54,157 Running command python setup.py egg_info 2020-07-30T15:58:56,275 running egg_info 2020-07-30T15:58:56,279 creating /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info 2020-07-30T15:58:56,297 writing /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/PKG-INFO 2020-07-30T15:58:56,305 writing dependency_links to /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/dependency_links.txt 2020-07-30T15:58:56,308 writing entry points to /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/entry_points.txt 2020-07-30T15:58:56,311 writing requirements to /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/requires.txt 2020-07-30T15:58:56,313 writing top-level names to /tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/top_level.txt 2020-07-30T15:58:56,317 writing manifest file '/tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/SOURCES.txt' 2020-07-30T15:58:56,629 reading manifest file '/tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/SOURCES.txt' 2020-07-30T15:58:56,632 reading manifest template 'MANIFEST.in' 2020-07-30T15:58:56,657 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-07-30T15:58:56,659 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-07-30T15:58:56,661 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-07-30T15:58:56,663 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-07-30T15:58:56,665 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-07-30T15:58:56,667 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-07-30T15:58:56,668 warning: no previously-included files found matching '.bumpversion.cfg' 2020-07-30T15:58:56,671 warning: no files found matching '*.txt' 2020-07-30T15:58:56,674 warning: no files found matching 'doc8.ini' 2020-07-30T15:58:56,674 warning: no files found matching '.coveragerc' 2020-07-30T15:58:56,691 writing manifest file '/tmp/pip-pip-egg-info-g8fmyq9c/pyobo.egg-info/SOURCES.txt' 2020-07-30T15:58:56,817 Source in /tmp/pip-wheel-414_3jy0/pyobo has version 0.2.5, which satisfies requirement pyobo==0.2.5 from https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz#sha256=fc4c20686de6003e7e3aad1dea2a409495b61438a5fe82a76380861e02e76d6e 2020-07-30T15:58:56,819 Removed pyobo==0.2.5 from https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz#sha256=fc4c20686de6003e7e3aad1dea2a409495b61438a5fe82a76380861e02e76d6e from build tracker '/tmp/pip-req-tracker-d9e7axk6' 2020-07-30T15:58:56,826 Building wheels for collected packages: pyobo 2020-07-30T15:58:56,836 Created temporary directory: /tmp/pip-wheel-npb0m48l 2020-07-30T15:58:56,836 Building wheel for pyobo (setup.py): started 2020-07-30T15:58:56,837 Destination directory: /tmp/pip-wheel-npb0m48l 2020-07-30T15:58:56,837 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-414_3jy0/pyobo/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-414_3jy0/pyobo/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-npb0m48l 2020-07-30T15:58:58,903 running bdist_wheel 2020-07-30T15:58:58,917 running build 2020-07-30T15:58:58,918 running build_py 2020-07-30T15:58:59,195 creating build 2020-07-30T15:58:59,196 creating build/lib 2020-07-30T15:58:59,198 creating build/lib/pyobo 2020-07-30T15:58:59,200 copying src/pyobo/aws.py -> build/lib/pyobo 2020-07-30T15:58:59,205 copying src/pyobo/__init__.py -> build/lib/pyobo 2020-07-30T15:58:59,209 copying src/pyobo/citation_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,213 copying src/pyobo/io_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,218 copying src/pyobo/version.py -> build/lib/pyobo 2020-07-30T15:58:59,222 copying src/pyobo/normalizer.py -> build/lib/pyobo 2020-07-30T15:58:59,228 copying src/pyobo/constants.py -> build/lib/pyobo 2020-07-30T15:58:59,234 copying src/pyobo/__main__.py -> build/lib/pyobo 2020-07-30T15:58:59,239 copying src/pyobo/path_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,245 copying src/pyobo/identifier_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,250 copying src/pyobo/cli_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,256 copying src/pyobo/ndex_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,261 copying src/pyobo/cache_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,268 copying src/pyobo/getters.py -> build/lib/pyobo 2020-07-30T15:58:59,274 copying src/pyobo/cli.py -> build/lib/pyobo 2020-07-30T15:58:59,280 copying src/pyobo/extract.py -> build/lib/pyobo 2020-07-30T15:58:59,287 copying src/pyobo/iter_utils.py -> build/lib/pyobo 2020-07-30T15:58:59,300 creating build/lib/pyobo/sources 2020-07-30T15:58:59,303 copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,308 copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,312 copying src/pyobo/sources/covid.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,316 copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,320 copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,326 copying src/pyobo/sources/msig.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,332 copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,338 copying src/pyobo/sources/utils.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,344 copying src/pyobo/sources/drugbank.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,349 copying src/pyobo/sources/itis.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,354 copying src/pyobo/sources/biogrid.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,358 copying src/pyobo/sources/mirbase_mature.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,362 copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,368 copying src/pyobo/sources/conso.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,374 copying src/pyobo/sources/npass.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,380 copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,386 copying src/pyobo/sources/pfam.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,392 copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,398 copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,404 copying src/pyobo/sources/pfam_clan.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,409 copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,415 copying src/pyobo/sources/chebi.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,421 copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,427 copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,434 copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,439 copying src/pyobo/sources/interpro.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,446 copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,452 copying src/pyobo/sources/mirbase_family.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,458 copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,464 copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,470 copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,477 copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,484 copying src/pyobo/sources/mirbase_constants.py -> build/lib/pyobo/sources 2020-07-30T15:58:59,492 creating build/lib/pyobo/database 2020-07-30T15:58:59,494 copying src/pyobo/database/__init__.py -> build/lib/pyobo/database 2020-07-30T15:58:59,500 copying src/pyobo/database/__main__.py -> build/lib/pyobo/database 2020-07-30T15:58:59,506 copying src/pyobo/database/cli.py -> build/lib/pyobo/database 2020-07-30T15:58:59,511 creating build/lib/pyobo/apps 2020-07-30T15:58:59,513 copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps 2020-07-30T15:58:59,518 copying src/pyobo/apps/utils.py -> build/lib/pyobo/apps 2020-07-30T15:58:59,523 creating build/lib/pyobo/struct 2020-07-30T15:58:59,525 copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,531 copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,536 copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,543 copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,552 copying src/pyobo/struct/registry.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,558 copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct 2020-07-30T15:58:59,565 creating build/lib/pyobo/xrefdb 2020-07-30T15:58:59,568 copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb 2020-07-30T15:58:59,572 copying src/pyobo/xrefdb/__main__.py -> build/lib/pyobo/xrefdb 2020-07-30T15:58:59,576 copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb 2020-07-30T15:58:59,582 copying src/pyobo/xrefdb/cli.py -> build/lib/pyobo/xrefdb 2020-07-30T15:58:59,588 creating build/lib/pyobo/registries 2020-07-30T15:58:59,591 copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,597 copying src/pyobo/registries/utils.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,602 copying src/pyobo/registries/metaregistry.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,608 copying src/pyobo/registries/ols.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,614 copying src/pyobo/registries/obofoundry.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,620 copying src/pyobo/registries/miriam.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,626 copying src/pyobo/registries/compare.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,631 copying src/pyobo/registries/registries.py -> build/lib/pyobo/registries 2020-07-30T15:58:59,640 creating build/lib/pyobo/sources/umls 2020-07-30T15:58:59,642 copying src/pyobo/sources/umls/__init__.py -> build/lib/pyobo/sources/umls 2020-07-30T15:58:59,649 copying src/pyobo/sources/umls/umls.py -> build/lib/pyobo/sources/umls 2020-07-30T15:58:59,655 copying src/pyobo/sources/umls/__main__.py -> build/lib/pyobo/sources/umls 2020-07-30T15:58:59,663 creating build/lib/pyobo/database/sql 2020-07-30T15:58:59,665 copying src/pyobo/database/sql/__init__.py -> build/lib/pyobo/database/sql 2020-07-30T15:58:59,671 copying src/pyobo/database/sql/frontend.py -> build/lib/pyobo/database/sql 2020-07-30T15:58:59,677 copying src/pyobo/database/sql/backend.py -> build/lib/pyobo/database/sql 2020-07-30T15:58:59,683 copying src/pyobo/database/sql/loader.py -> build/lib/pyobo/database/sql 2020-07-30T15:58:59,691 creating build/lib/pyobo/apps/gilda 2020-07-30T15:58:59,821 copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda 2020-07-30T15:58:59,827 copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda 2020-07-30T15:58:59,833 copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda 2020-07-30T15:58:59,841 creating build/lib/pyobo/apps/mapper 2020-07-30T15:58:59,842 copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper 2020-07-30T15:58:59,847 copying src/pyobo/apps/mapper/mapper.py -> build/lib/pyobo/apps/mapper 2020-07-30T15:58:59,852 copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper 2020-07-30T15:58:59,857 creating build/lib/pyobo/apps/resolver 2020-07-30T15:58:59,859 copying src/pyobo/apps/resolver/__init__.py -> build/lib/pyobo/apps/resolver 2020-07-30T15:58:59,865 copying src/pyobo/apps/resolver/resolver.py -> build/lib/pyobo/apps/resolver 2020-07-30T15:58:59,872 copying src/pyobo/apps/resolver/__main__.py -> build/lib/pyobo/apps/resolver 2020-07-30T15:58:59,880 creating build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,883 copying src/pyobo/xrefdb/sources/intact.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,887 copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,892 copying src/pyobo/xrefdb/sources/famplex.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,896 copying src/pyobo/xrefdb/sources/ncit.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,900 copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,906 copying src/pyobo/xrefdb/sources/pubchem.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,912 copying src/pyobo/xrefdb/sources/wikidata.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,917 copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,923 copying src/pyobo/xrefdb/sources/compath.py -> build/lib/pyobo/xrefdb/sources 2020-07-30T15:58:59,927 running egg_info 2020-07-30T15:58:59,968 writing src/pyobo.egg-info/PKG-INFO 2020-07-30T15:58:59,974 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2020-07-30T15:58:59,977 writing entry points to src/pyobo.egg-info/entry_points.txt 2020-07-30T15:58:59,981 writing requirements to src/pyobo.egg-info/requires.txt 2020-07-30T15:58:59,983 writing top-level names to src/pyobo.egg-info/top_level.txt 2020-07-30T15:59:00,012 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2020-07-30T15:59:00,028 reading manifest template 'MANIFEST.in' 2020-07-30T15:59:00,051 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2020-07-30T15:59:00,053 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2020-07-30T15:59:00,056 warning: no previously-included files matching '*.so' found anywhere in distribution 2020-07-30T15:59:00,059 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2020-07-30T15:59:00,061 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2020-07-30T15:59:00,064 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2020-07-30T15:59:00,066 warning: no previously-included files found matching '.bumpversion.cfg' 2020-07-30T15:59:00,069 warning: no files found matching '*.txt' 2020-07-30T15:59:00,071 warning: no files found matching 'doc8.ini' 2020-07-30T15:59:00,071 warning: no files found matching '.coveragerc' 2020-07-30T15:59:00,092 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2020-07-30T15:59:00,102 copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries 2020-07-30T15:59:00,109 copying src/pyobo/registries/miriam.json -> build/lib/pyobo/registries 2020-07-30T15:59:00,183 copying src/pyobo/registries/obofoundry.json -> build/lib/pyobo/registries 2020-07-30T15:59:00,210 copying src/pyobo/registries/ols.json -> build/lib/pyobo/registries 2020-07-30T15:59:00,282 copying src/pyobo/sources/umls/synonym_types.tsv -> build/lib/pyobo/sources/umls 2020-07-30T15:59:00,289 creating build/lib/pyobo/apps/gilda/templates 2020-07-30T15:59:00,292 copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates 2020-07-30T15:59:00,299 copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates 2020-07-30T15:59:00,303 copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates 2020-07-30T15:59:00,308 creating build/lib/pyobo/apps/mapper/templates 2020-07-30T15:59:00,310 copying src/pyobo/apps/mapper/templates/mapper_home.html -> build/lib/pyobo/apps/mapper/templates 2020-07-30T15:59:00,315 creating build/lib/pyobo/apps/resolver/templates 2020-07-30T15:59:00,317 copying src/pyobo/apps/resolver/templates/home.html -> build/lib/pyobo/apps/resolver/templates 2020-07-30T15:59:00,358 installing to build/bdist.linux-armv7l/wheel 2020-07-30T15:59:00,358 running install 2020-07-30T15:59:00,360 running install_lib 2020-07-30T15:59:00,368 creating build/bdist.linux-armv7l 2020-07-30T15:59:00,368 creating build/bdist.linux-armv7l/wheel 2020-07-30T15:59:00,373 creating build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,377 creating build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,379 copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,385 copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,390 copying build/lib/pyobo/sources/covid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,396 copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,401 copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,405 copying build/lib/pyobo/sources/msig.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,410 copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,415 copying build/lib/pyobo/sources/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,419 copying build/lib/pyobo/sources/drugbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,425 copying build/lib/pyobo/sources/itis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,430 copying build/lib/pyobo/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,436 copying build/lib/pyobo/sources/mirbase_mature.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,441 copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,447 copying build/lib/pyobo/sources/conso.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,452 copying build/lib/pyobo/sources/npass.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,458 copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,464 copying build/lib/pyobo/sources/pfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,470 copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,476 copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,482 copying build/lib/pyobo/sources/pfam_clan.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,487 copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,491 copying build/lib/pyobo/sources/chebi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,495 copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,500 copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,505 copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,510 copying build/lib/pyobo/sources/interpro.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,516 copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,522 copying build/lib/pyobo/sources/mirbase_family.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,528 copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,532 copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,537 copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,541 copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,546 copying build/lib/pyobo/sources/mirbase_constants.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2020-07-30T15:59:00,553 creating build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2020-07-30T15:59:00,555 copying build/lib/pyobo/sources/umls/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2020-07-30T15:59:00,561 copying build/lib/pyobo/sources/umls/synonym_types.tsv -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2020-07-30T15:59:00,568 copying build/lib/pyobo/sources/umls/umls.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2020-07-30T15:59:00,573 copying build/lib/pyobo/sources/umls/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2020-07-30T15:59:00,577 copying build/lib/pyobo/aws.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,582 copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,586 copying build/lib/pyobo/citation_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,593 copying build/lib/pyobo/io_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,599 copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,604 copying build/lib/pyobo/normalizer.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,612 creating build/bdist.linux-armv7l/wheel/pyobo/database 2020-07-30T15:59:00,613 copying build/lib/pyobo/database/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database 2020-07-30T15:59:00,618 copying build/lib/pyobo/database/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/database 2020-07-30T15:59:00,623 creating build/bdist.linux-armv7l/wheel/pyobo/database/sql 2020-07-30T15:59:00,625 copying build/lib/pyobo/database/sql/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql 2020-07-30T15:59:00,630 copying build/lib/pyobo/database/sql/frontend.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql 2020-07-30T15:59:00,635 copying build/lib/pyobo/database/sql/backend.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql 2020-07-30T15:59:00,641 copying build/lib/pyobo/database/sql/loader.py -> build/bdist.linux-armv7l/wheel/pyobo/database/sql 2020-07-30T15:59:00,647 copying build/lib/pyobo/database/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/database 2020-07-30T15:59:00,652 copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,656 copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,661 creating build/bdist.linux-armv7l/wheel/pyobo/apps 2020-07-30T15:59:00,664 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2020-07-30T15:59:00,666 copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2020-07-30T15:59:00,672 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2020-07-30T15:59:00,675 copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2020-07-30T15:59:00,681 copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2020-07-30T15:59:00,686 copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2020-07-30T15:59:00,691 copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2020-07-30T15:59:00,695 copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2020-07-30T15:59:00,699 copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2020-07-30T15:59:00,703 copying build/lib/pyobo/apps/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2020-07-30T15:59:00,708 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2020-07-30T15:59:00,710 copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2020-07-30T15:59:00,717 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2020-07-30T15:59:00,720 copying build/lib/pyobo/apps/mapper/templates/mapper_home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2020-07-30T15:59:00,726 copying build/lib/pyobo/apps/mapper/mapper.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2020-07-30T15:59:00,732 copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2020-07-30T15:59:00,739 creating build/bdist.linux-armv7l/wheel/pyobo/apps/resolver 2020-07-30T15:59:00,742 copying build/lib/pyobo/apps/resolver/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/resolver 2020-07-30T15:59:00,747 copying build/lib/pyobo/apps/resolver/resolver.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/resolver 2020-07-30T15:59:00,755 creating build/bdist.linux-armv7l/wheel/pyobo/apps/resolver/templates 2020-07-30T15:59:00,757 copying build/lib/pyobo/apps/resolver/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/resolver/templates 2020-07-30T15:59:00,764 copying build/lib/pyobo/apps/resolver/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/resolver 2020-07-30T15:59:00,769 copying build/lib/pyobo/path_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,774 copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,780 copying build/lib/pyobo/cli_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,787 creating build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,789 copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,795 copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,801 copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,808 copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,816 copying build/lib/pyobo/struct/registry.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,820 copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2020-07-30T15:59:00,824 copying build/lib/pyobo/ndex_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,828 copying build/lib/pyobo/cache_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,833 copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,840 copying build/lib/pyobo/cli.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,847 copying build/lib/pyobo/extract.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,856 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2020-07-30T15:59:00,860 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,863 copying build/lib/pyobo/xrefdb/sources/intact.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,868 copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,872 copying build/lib/pyobo/xrefdb/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,877 copying build/lib/pyobo/xrefdb/sources/ncit.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,882 copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,887 copying build/lib/pyobo/xrefdb/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,892 copying build/lib/pyobo/xrefdb/sources/wikidata.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,897 copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,902 copying build/lib/pyobo/xrefdb/sources/compath.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2020-07-30T15:59:00,906 copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2020-07-30T15:59:00,911 copying build/lib/pyobo/xrefdb/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2020-07-30T15:59:00,916 copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2020-07-30T15:59:00,922 copying build/lib/pyobo/xrefdb/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2020-07-30T15:59:00,927 copying build/lib/pyobo/iter_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2020-07-30T15:59:00,933 creating build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:00,936 copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:00,941 copying build/lib/pyobo/registries/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:00,946 copying build/lib/pyobo/registries/obofoundry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:00,971 copying build/lib/pyobo/registries/metaregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:00,976 copying build/lib/pyobo/registries/ols.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,047 copying build/lib/pyobo/registries/ols.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,051 copying build/lib/pyobo/registries/obofoundry.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,056 copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,065 copying build/lib/pyobo/registries/miriam.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,072 copying build/lib/pyobo/registries/compare.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,079 copying build/lib/pyobo/registries/miriam.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,150 copying build/lib/pyobo/registries/registries.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2020-07-30T15:59:01,155 running install_egg_info 2020-07-30T15:59:01,176 Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.2.5-py3.7.egg-info 2020-07-30T15:59:01,212 running install_scripts 2020-07-30T15:59:01,403 creating build/bdist.linux-armv7l/wheel/pyobo-0.2.5.dist-info/WHEEL 2020-07-30T15:59:01,408 creating '/tmp/pip-wheel-npb0m48l/pyobo-0.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-07-30T15:59:01,413 adding 'pyobo/__init__.py' 2020-07-30T15:59:01,416 adding 'pyobo/__main__.py' 2020-07-30T15:59:01,420 adding 'pyobo/aws.py' 2020-07-30T15:59:01,424 adding 'pyobo/cache_utils.py' 2020-07-30T15:59:01,428 adding 'pyobo/citation_utils.py' 2020-07-30T15:59:01,433 adding 'pyobo/cli.py' 2020-07-30T15:59:01,437 adding 'pyobo/cli_utils.py' 2020-07-30T15:59:01,439 adding 'pyobo/constants.py' 2020-07-30T15:59:01,443 adding 'pyobo/extract.py' 2020-07-30T15:59:01,445 adding 'pyobo/getters.py' 2020-07-30T15:59:01,448 adding 'pyobo/identifier_utils.py' 2020-07-30T15:59:01,451 adding 'pyobo/io_utils.py' 2020-07-30T15:59:01,453 adding 'pyobo/iter_utils.py' 2020-07-30T15:59:01,456 adding 'pyobo/ndex_utils.py' 2020-07-30T15:59:01,459 adding 'pyobo/normalizer.py' 2020-07-30T15:59:01,462 adding 'pyobo/path_utils.py' 2020-07-30T15:59:01,464 adding 'pyobo/version.py' 2020-07-30T15:59:01,467 adding 'pyobo/apps/__init__.py' 2020-07-30T15:59:01,470 adding 'pyobo/apps/utils.py' 2020-07-30T15:59:01,473 adding 'pyobo/apps/gilda/__init__.py' 2020-07-30T15:59:01,476 adding 'pyobo/apps/gilda/__main__.py' 2020-07-30T15:59:01,478 adding 'pyobo/apps/gilda/cli.py' 2020-07-30T15:59:01,482 adding 'pyobo/apps/gilda/templates/base.html' 2020-07-30T15:59:01,484 adding 'pyobo/apps/gilda/templates/home.html' 2020-07-30T15:59:01,486 adding 'pyobo/apps/gilda/templates/matches.html' 2020-07-30T15:59:01,490 adding 'pyobo/apps/mapper/__init__.py' 2020-07-30T15:59:01,492 adding 'pyobo/apps/mapper/__main__.py' 2020-07-30T15:59:01,495 adding 'pyobo/apps/mapper/mapper.py' 2020-07-30T15:59:01,499 adding 'pyobo/apps/mapper/templates/mapper_home.html' 2020-07-30T15:59:01,502 adding 'pyobo/apps/resolver/__init__.py' 2020-07-30T15:59:01,505 adding 'pyobo/apps/resolver/__main__.py' 2020-07-30T15:59:01,508 adding 'pyobo/apps/resolver/resolver.py' 2020-07-30T15:59:01,512 adding 'pyobo/apps/resolver/templates/home.html' 2020-07-30T15:59:01,515 adding 'pyobo/database/__init__.py' 2020-07-30T15:59:01,517 adding 'pyobo/database/__main__.py' 2020-07-30T15:59:01,520 adding 'pyobo/database/cli.py' 2020-07-30T15:59:01,523 adding 'pyobo/database/sql/__init__.py' 2020-07-30T15:59:01,526 adding 'pyobo/database/sql/backend.py' 2020-07-30T15:59:01,528 adding 'pyobo/database/sql/frontend.py' 2020-07-30T15:59:01,531 adding 'pyobo/database/sql/loader.py' 2020-07-30T15:59:01,535 adding 'pyobo/registries/__init__.py' 2020-07-30T15:59:01,537 adding 'pyobo/registries/compare.py' 2020-07-30T15:59:01,542 adding 'pyobo/registries/metaregistry.json' 2020-07-30T15:59:01,545 adding 'pyobo/registries/metaregistry.py' 2020-07-30T15:59:01,638 adding 'pyobo/registries/miriam.json' 2020-07-30T15:59:01,649 adding 'pyobo/registries/miriam.py' 2020-07-30T15:59:01,676 adding 'pyobo/registries/obofoundry.json' 2020-07-30T15:59:01,681 adding 'pyobo/registries/obofoundry.py' 2020-07-30T15:59:01,758 adding 'pyobo/registries/ols.json' 2020-07-30T15:59:01,769 adding 'pyobo/registries/ols.py' 2020-07-30T15:59:01,772 adding 'pyobo/registries/registries.py' 2020-07-30T15:59:01,775 adding 'pyobo/registries/utils.py' 2020-07-30T15:59:01,780 adding 'pyobo/sources/__init__.py' 2020-07-30T15:59:01,782 adding 'pyobo/sources/biogrid.py' 2020-07-30T15:59:01,785 adding 'pyobo/sources/cgnc.py' 2020-07-30T15:59:01,787 adding 'pyobo/sources/chebi.py' 2020-07-30T15:59:01,790 adding 'pyobo/sources/complexportal.py' 2020-07-30T15:59:01,793 adding 'pyobo/sources/conso.py' 2020-07-30T15:59:01,795 adding 'pyobo/sources/covid.py' 2020-07-30T15:59:01,799 adding 'pyobo/sources/drugbank.py' 2020-07-30T15:59:01,802 adding 'pyobo/sources/expasy.py' 2020-07-30T15:59:01,805 adding 'pyobo/sources/gmt_utils.py' 2020-07-30T15:59:01,808 adding 'pyobo/sources/hgnc.py' 2020-07-30T15:59:01,810 adding 'pyobo/sources/hgncgenefamily.py' 2020-07-30T15:59:01,813 adding 'pyobo/sources/interpro.py' 2020-07-30T15:59:01,816 adding 'pyobo/sources/itis.py' 2020-07-30T15:59:01,819 adding 'pyobo/sources/mesh.py' 2020-07-30T15:59:01,822 adding 'pyobo/sources/mgi.py' 2020-07-30T15:59:01,825 adding 'pyobo/sources/mirbase.py' 2020-07-30T15:59:01,827 adding 'pyobo/sources/mirbase_constants.py' 2020-07-30T15:59:01,830 adding 'pyobo/sources/mirbase_family.py' 2020-07-30T15:59:01,832 adding 'pyobo/sources/mirbase_mature.py' 2020-07-30T15:59:01,835 adding 'pyobo/sources/msig.py' 2020-07-30T15:59:01,838 adding 'pyobo/sources/ncbigene.py' 2020-07-30T15:59:01,840 adding 'pyobo/sources/npass.py' 2020-07-30T15:59:01,843 adding 'pyobo/sources/pathbank.py' 2020-07-30T15:59:01,846 adding 'pyobo/sources/pfam.py' 2020-07-30T15:59:01,848 adding 'pyobo/sources/pfam_clan.py' 2020-07-30T15:59:01,851 adding 'pyobo/sources/pid.py' 2020-07-30T15:59:01,854 adding 'pyobo/sources/pubchem.py' 2020-07-30T15:59:01,856 adding 'pyobo/sources/reactome.py' 2020-07-30T15:59:01,859 adding 'pyobo/sources/rgd.py' 2020-07-30T15:59:01,862 adding 'pyobo/sources/sgd.py' 2020-07-30T15:59:01,864 adding 'pyobo/sources/utils.py' 2020-07-30T15:59:01,868 adding 'pyobo/sources/wikipathways.py' 2020-07-30T15:59:01,871 adding 'pyobo/sources/umls/__init__.py' 2020-07-30T15:59:01,873 adding 'pyobo/sources/umls/__main__.py' 2020-07-30T15:59:01,877 adding 'pyobo/sources/umls/synonym_types.tsv' 2020-07-30T15:59:01,880 adding 'pyobo/sources/umls/umls.py' 2020-07-30T15:59:01,883 adding 'pyobo/struct/__init__.py' 2020-07-30T15:59:01,886 adding 'pyobo/struct/reference.py' 2020-07-30T15:59:01,888 adding 'pyobo/struct/registry.py' 2020-07-30T15:59:01,895 adding 'pyobo/struct/struct.py' 2020-07-30T15:59:01,898 adding 'pyobo/struct/typedef.py' 2020-07-30T15:59:01,901 adding 'pyobo/struct/utils.py' 2020-07-30T15:59:01,904 adding 'pyobo/xrefdb/__init__.py' 2020-07-30T15:59:01,906 adding 'pyobo/xrefdb/__main__.py' 2020-07-30T15:59:01,909 adding 'pyobo/xrefdb/cli.py' 2020-07-30T15:59:01,913 adding 'pyobo/xrefdb/xrefs_pipeline.py' 2020-07-30T15:59:01,917 adding 'pyobo/xrefdb/sources/__init__.py' 2020-07-30T15:59:01,920 adding 'pyobo/xrefdb/sources/cbms2019.py' 2020-07-30T15:59:01,922 adding 'pyobo/xrefdb/sources/compath.py' 2020-07-30T15:59:01,925 adding 'pyobo/xrefdb/sources/famplex.py' 2020-07-30T15:59:01,927 adding 'pyobo/xrefdb/sources/gilda.py' 2020-07-30T15:59:01,930 adding 'pyobo/xrefdb/sources/intact.py' 2020-07-30T15:59:01,933 adding 'pyobo/xrefdb/sources/ncit.py' 2020-07-30T15:59:01,935 adding 'pyobo/xrefdb/sources/pubchem.py' 2020-07-30T15:59:01,938 adding 'pyobo/xrefdb/sources/wikidata.py' 2020-07-30T15:59:01,942 adding 'pyobo-0.2.5.dist-info/LICENSE' 2020-07-30T15:59:01,946 adding 'pyobo-0.2.5.dist-info/METADATA' 2020-07-30T15:59:01,948 adding 'pyobo-0.2.5.dist-info/WHEEL' 2020-07-30T15:59:01,950 adding 'pyobo-0.2.5.dist-info/entry_points.txt' 2020-07-30T15:59:01,952 adding 'pyobo-0.2.5.dist-info/top_level.txt' 2020-07-30T15:59:01,954 adding 'pyobo-0.2.5.dist-info/RECORD' 2020-07-30T15:59:01,992 removing build/bdist.linux-armv7l/wheel 2020-07-30T15:59:02,227 Building wheel for pyobo (setup.py): finished with status 'done' 2020-07-30T15:59:02,237 Created wheel for pyobo: filename=pyobo-0.2.5-py3-none-any.whl size=375060 sha256=ec7f2c7e1eac703ae5e6ce520ebec332bc69817368144a721054c87c706c3f40 2020-07-30T15:59:02,238 Stored in directory: /tmp/pip-ephem-wheel-cache-hvlql7s4/wheels/76/62/6b/2eb707e704cb78a2265f3afef421cba3bd9c8378224d52f25f 2020-07-30T15:59:02,243 Successfully built pyobo 2020-07-30T15:59:02,315 Removed build tracker: '/tmp/pip-req-tracker-d9e7axk6'