2020-08-04T14:05:03,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-r6qzy811
2020-08-04T14:05:03,945 Created temporary directory: /tmp/pip-req-tracker-hdhsbx5k
2020-08-04T14:05:03,946 Initialized build tracking at /tmp/pip-req-tracker-hdhsbx5k
2020-08-04T14:05:03,949 Created build tracker: /tmp/pip-req-tracker-hdhsbx5k
2020-08-04T14:05:03,949 Entered build tracker: /tmp/pip-req-tracker-hdhsbx5k
2020-08-04T14:05:03,951 Created temporary directory: /tmp/pip-wheel-xxzp0ljl
2020-08-04T14:05:03,972 1 location(s) to search for versions of damona:
2020-08-04T14:05:03,972 * https://pypi.org/simple/damona/
2020-08-04T14:05:03,973 Fetching project page and analyzing links: https://pypi.org/simple/damona/
2020-08-04T14:05:03,975 Getting page https://pypi.org/simple/damona/
2020-08-04T14:05:03,980 Found index url https://pypi.org/simple
2020-08-04T14:05:04,373   Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz#sha256=ffd1316e321796f0fa5a56b54f75dd4f5d927ecf0bc9c1a336f160f038ae6890 (from https://pypi.org/simple/damona/), version: 0.1.0
2020-08-04T14:05:04,374   Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz#sha256=b5c70b83f51e4d32f2f3dda532abf3713a177b8e5ef7a0b26a44a801a0313236 (from https://pypi.org/simple/damona/), version: 0.1.1
2020-08-04T14:05:04,376   Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz#sha256=6023b50d62eb18c216383a96021bf88cdf651ebc741397892b74bc49d642bdc1 (from https://pypi.org/simple/damona/), version: 0.2.0
2020-08-04T14:05:04,377   Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz#sha256=69aa6cb1042ad0bf06363f68867de0fec1be4cf717d73574829d15967fadf019 (from https://pypi.org/simple/damona/), version: 0.2.1
2020-08-04T14:05:04,378   Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 (from https://pypi.org/simple/damona/), version: 0.2.2
2020-08-04T14:05:04,390 Given no hashes to check 1 links for project 'damona': discarding no candidates
2020-08-04T14:05:04,392 Using version 0.2.2 (newest of versions: 0.2.2)
2020-08-04T14:05:04,399 Collecting damona==0.2.2
2020-08-04T14:05:04,404   Created temporary directory: /tmp/pip-unpack-nehvpzkd
2020-08-04T14:05:04,647   Downloading damona-0.2.2.tar.gz (13 kB)
2020-08-04T14:05:04,848   Added damona==0.2.2 from https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 to build tracker '/tmp/pip-req-tracker-hdhsbx5k'
2020-08-04T14:05:04,850     Running setup.py (path:/tmp/pip-wheel-xxzp0ljl/damona/setup.py) egg_info for package damona
2020-08-04T14:05:04,852     Created temporary directory: /tmp/pip-pip-egg-info-q1ukq5lj
2020-08-04T14:05:04,852     Running command python setup.py egg_info
2020-08-04T14:05:07,453     running egg_info
2020-08-04T14:05:07,458     creating /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info
2020-08-04T14:05:07,461     writing entry points to /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/entry_points.txt
2020-08-04T14:05:07,464     writing dependency_links to /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/dependency_links.txt
2020-08-04T14:05:07,467     writing /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/PKG-INFO
2020-08-04T14:05:07,474     writing requirements to /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/requires.txt
2020-08-04T14:05:07,476     writing top-level names to /tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/top_level.txt
2020-08-04T14:05:07,482     writing manifest file '/tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/SOURCES.txt'
2020-08-04T14:05:07,893     reading manifest file '/tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/SOURCES.txt'
2020-08-04T14:05:07,897     reading manifest template 'MANIFEST.in'
2020-08-04T14:05:07,900     warning: no previously-included files matching '__pycache__' found under directory '*'
2020-08-04T14:05:07,902     warning: no previously-included files matching '*pyc' found under directory '*'
2020-08-04T14:05:07,905     warning: no files found matching 'CONTRIBUTING.rst'
2020-08-04T14:05:07,906     warning: no files found matching 'LICENSE'
2020-08-04T14:05:07,907     warning: manifest_maker: MANIFEST.in, line 7: unknown action '<<<<<<<'

2020-08-04T14:05:07,909     warning: manifest_maker: MANIFEST.in, line 9: unknown action '======='

2020-08-04T14:05:07,911     warning: manifest_maker: MANIFEST.in, line 10: unknown action 'inclued'

2020-08-04T14:05:07,912     warning: manifest_maker: MANIFEST.in, line 11: unknown action '>>>>>>>'

2020-08-04T14:05:07,916     writing manifest file '/tmp/pip-pip-egg-info-q1ukq5lj/damona.egg-info/SOURCES.txt'
2020-08-04T14:05:08,075   Source in /tmp/pip-wheel-xxzp0ljl/damona has version 0.2.2, which satisfies requirement damona==0.2.2 from https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22
2020-08-04T14:05:08,076   Removed damona==0.2.2 from https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 from build tracker '/tmp/pip-req-tracker-hdhsbx5k'
2020-08-04T14:05:08,083 Building wheels for collected packages: damona
2020-08-04T14:05:08,093   Created temporary directory: /tmp/pip-wheel-fnd7tz3e
2020-08-04T14:05:08,094   Building wheel for damona (setup.py): started
2020-08-04T14:05:08,095   Destination directory: /tmp/pip-wheel-fnd7tz3e
2020-08-04T14:05:08,096   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xxzp0ljl/damona/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xxzp0ljl/damona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fnd7tz3e
2020-08-04T14:05:11,231   running bdist_wheel
2020-08-04T14:05:11,251   running build
2020-08-04T14:05:11,251   running build_py
2020-08-04T14:05:11,698   creating build
2020-08-04T14:05:11,699   creating build/lib
2020-08-04T14:05:11,701   creating build/lib/damona
2020-08-04T14:05:11,704   copying damona/registry.py -> build/lib/damona
2020-08-04T14:05:11,710   copying damona/script.py -> build/lib/damona
2020-08-04T14:05:11,715   copying damona/pull.py -> build/lib/damona
2020-08-04T14:05:11,719   copying damona/__init__.py -> build/lib/damona
2020-08-04T14:05:11,726   creating build/lib/damona/recipes
2020-08-04T14:05:11,728   copying damona/recipes/__init__.py -> build/lib/damona/recipes
2020-08-04T14:05:11,749   creating build/lib/damona/recipes/damona
2020-08-04T14:05:11,751   copying damona/recipes/damona/Singularity.damona -> build/lib/damona/recipes/damona
2020-08-04T14:05:11,757   creating build/lib/damona/recipes/R
2020-08-04T14:05:11,759   copying damona/recipes/R/Singularity.R_4.0.2 -> build/lib/damona/recipes/R
2020-08-04T14:05:11,766   copying damona/recipes/R/Singularity.R_3.6.3 -> build/lib/damona/recipes/R
2020-08-04T14:05:11,772   creating build/lib/damona/recipes/fastqc
2020-08-04T14:05:11,773   copying damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/recipes/fastqc
2020-08-04T14:05:11,779   creating build/lib/damona/recipes/kraken
2020-08-04T14:05:11,781   copying damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/recipes/kraken
2020-08-04T14:05:11,787   copying damona/recipes/kraken/Singularity.kraken_1.1 -> build/lib/damona/recipes/kraken
2020-08-04T14:05:11,793   creating build/lib/damona/recipes/prokka
2020-08-04T14:05:11,795   copying damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/recipes/prokka
2020-08-04T14:05:11,801   creating build/lib/damona/recipes/conda
2020-08-04T14:05:11,803   copying damona/recipes/conda/Singularity.conda_4.7.12 -> build/lib/damona/recipes/conda
2020-08-04T14:05:11,809   creating build/lib/damona/recipes/bcl2fastq
2020-08-04T14:05:11,811   copying damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/recipes/bcl2fastq
2020-08-04T14:05:11,817   creating build/lib/damona/recipes/salmon
2020-08-04T14:05:11,819   copying damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/recipes/salmon
2020-08-04T14:05:11,825   copying damona/recipes/damona/registry.yaml -> build/lib/damona/recipes/damona
2020-08-04T14:05:11,831   copying damona/recipes/R/registry.yaml -> build/lib/damona/recipes/R
2020-08-04T14:05:11,837   copying damona/recipes/fastqc/registry.yaml -> build/lib/damona/recipes/fastqc
2020-08-04T14:05:11,843   copying damona/recipes/kraken/registry.yaml -> build/lib/damona/recipes/kraken
2020-08-04T14:05:11,848   copying damona/recipes/prokka/registry.yaml -> build/lib/damona/recipes/prokka
2020-08-04T14:05:11,853   copying damona/recipes/conda/registry.yaml -> build/lib/damona/recipes/conda
2020-08-04T14:05:11,859   copying damona/recipes/bcl2fastq/registry.yaml -> build/lib/damona/recipes/bcl2fastq
2020-08-04T14:05:11,864   copying damona/recipes/salmon/registry.yaml -> build/lib/damona/recipes/salmon
2020-08-04T14:05:11,881   installing to build/bdist.linux-armv7l/wheel
2020-08-04T14:05:11,881   running install
2020-08-04T14:05:11,884   running install_lib
2020-08-04T14:05:11,894   creating build/bdist.linux-armv7l
2020-08-04T14:05:11,895   creating build/bdist.linux-armv7l/wheel
2020-08-04T14:05:11,899   creating build/bdist.linux-armv7l/wheel/damona
2020-08-04T14:05:11,901   copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-04T14:05:11,906   copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-04T14:05:11,912   copying build/lib/damona/pull.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-04T14:05:11,917   copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-04T14:05:11,923   creating build/bdist.linux-armv7l/wheel/damona/recipes
2020-08-04T14:05:11,927   creating build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-04T14:05:11,929   copying build/lib/damona/recipes/damona/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-04T14:05:11,934   copying build/lib/damona/recipes/damona/Singularity.damona -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-04T14:05:11,940   creating build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-04T14:05:11,942   copying build/lib/damona/recipes/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-04T14:05:11,947   copying build/lib/damona/recipes/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-04T14:05:11,952   copying build/lib/damona/recipes/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-04T14:05:11,958   creating build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-04T14:05:11,960   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-04T14:05:11,965   copying build/lib/damona/recipes/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-04T14:05:11,971   creating build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-04T14:05:11,973   copying build/lib/damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-04T14:05:11,978   copying build/lib/damona/recipes/kraken/Singularity.kraken_1.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-04T14:05:11,982   copying build/lib/damona/recipes/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-04T14:05:11,988   creating build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-04T14:05:11,990   copying build/lib/damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-04T14:05:11,996   copying build/lib/damona/recipes/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-04T14:05:11,1000   copying build/lib/damona/recipes/__init__.py -> build/bdist.linux-armv7l/wheel/damona/recipes
2020-08-04T14:05:12,006   creating build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-04T14:05:12,008   copying build/lib/damona/recipes/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-04T14:05:12,014   copying build/lib/damona/recipes/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-04T14:05:12,020   creating build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-04T14:05:12,022   copying build/lib/damona/recipes/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-04T14:05:12,027   copying build/lib/damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-04T14:05:12,033   creating build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-04T14:05:12,035   copying build/lib/damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-04T14:05:12,040   copying build/lib/damona/recipes/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-04T14:05:12,043   running install_egg_info
2020-08-04T14:05:12,101   running egg_info
2020-08-04T14:05:12,103   writing entry points to damona.egg-info/entry_points.txt
2020-08-04T14:05:12,105   writing top-level names to damona.egg-info/top_level.txt
2020-08-04T14:05:12,108   writing dependency_links to damona.egg-info/dependency_links.txt
2020-08-04T14:05:12,111   writing damona.egg-info/PKG-INFO
2020-08-04T14:05:12,117   writing requirements to damona.egg-info/requires.txt
2020-08-04T14:05:12,133   reading manifest file 'damona.egg-info/SOURCES.txt'
2020-08-04T14:05:12,139   reading manifest template 'MANIFEST.in'
2020-08-04T14:05:12,142   warning: no previously-included files matching '__pycache__' found under directory '*'
2020-08-04T14:05:12,145   warning: no previously-included files matching '*pyc' found under directory '*'
2020-08-04T14:05:12,148   warning: no files found matching 'CONTRIBUTING.rst'
2020-08-04T14:05:12,148   warning: no files found matching 'LICENSE'
2020-08-04T14:05:12,150   warning: manifest_maker: MANIFEST.in, line 7: unknown action '<<<<<<<'

2020-08-04T14:05:12,151   warning: manifest_maker: MANIFEST.in, line 9: unknown action '======='

2020-08-04T14:05:12,153   warning: manifest_maker: MANIFEST.in, line 10: unknown action 'inclued'

2020-08-04T14:05:12,154   warning: manifest_maker: MANIFEST.in, line 11: unknown action '>>>>>>>'

2020-08-04T14:05:12,162   writing manifest file 'damona.egg-info/SOURCES.txt'
2020-08-04T14:05:12,165   Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.2.2-py3.5.egg-info
2020-08-04T14:05:12,201   running install_scripts
2020-08-04T14:05:12,458   creating build/bdist.linux-armv7l/wheel/damona-0.2.2.dist-info/WHEEL
2020-08-04T14:05:12,791   Building wheel for damona (setup.py): finished with status 'done'
2020-08-04T14:05:12,796   Created wheel for damona: filename=damona-0.2.2-py3-none-any.whl size=20643 sha256=9165891e105689e76d95ddf46067837a1ee8b13d1d3af36b5af846c1b8ee4b92
2020-08-04T14:05:12,797   Stored in directory: /tmp/pip-ephem-wheel-cache-r6qzy811/wheels/48/48/eb/b0f9d2801767ee5aedee445acdd6ebbe0ab88c2135e4eb26e3
2020-08-04T14:05:12,801 Successfully built damona
2020-08-04T14:05:12,811 Removed build tracker: '/tmp/pip-req-tracker-hdhsbx5k'