2020-08-06T17:20:21,743 Created temporary directory: /tmp/pip-ephem-wheel-cache-6m72t1ym
2020-08-06T17:20:21,751 Created temporary directory: /tmp/pip-req-tracker-37iwefjm
2020-08-06T17:20:21,753 Initialized build tracking at /tmp/pip-req-tracker-37iwefjm
2020-08-06T17:20:21,754 Created build tracker: /tmp/pip-req-tracker-37iwefjm
2020-08-06T17:20:21,755 Entered build tracker: /tmp/pip-req-tracker-37iwefjm
2020-08-06T17:20:21,756 Created temporary directory: /tmp/pip-wheel-z4tlkrbw
2020-08-06T17:20:21,778 1 location(s) to search for versions of damona:
2020-08-06T17:20:21,778 * https://pypi.org/simple/damona/
2020-08-06T17:20:21,779 Fetching project page and analyzing links: https://pypi.org/simple/damona/
2020-08-06T17:20:21,782 Getting page https://pypi.org/simple/damona/
2020-08-06T17:20:21,788 Found index url https://pypi.org/simple
2020-08-06T17:20:22,185   Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz#sha256=ffd1316e321796f0fa5a56b54f75dd4f5d927ecf0bc9c1a336f160f038ae6890 (from https://pypi.org/simple/damona/), version: 0.1.0
2020-08-06T17:20:22,187   Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz#sha256=b5c70b83f51e4d32f2f3dda532abf3713a177b8e5ef7a0b26a44a801a0313236 (from https://pypi.org/simple/damona/), version: 0.1.1
2020-08-06T17:20:22,189   Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz#sha256=6023b50d62eb18c216383a96021bf88cdf651ebc741397892b74bc49d642bdc1 (from https://pypi.org/simple/damona/), version: 0.2.0
2020-08-06T17:20:22,191   Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz#sha256=69aa6cb1042ad0bf06363f68867de0fec1be4cf717d73574829d15967fadf019 (from https://pypi.org/simple/damona/), version: 0.2.1
2020-08-06T17:20:22,192   Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz#sha256=e8eced44b5c69ff5c0b87977969c0942017163e78203fcdccd8591c5d78a7a22 (from https://pypi.org/simple/damona/), version: 0.2.2
2020-08-06T17:20:22,194   Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz#sha256=d87f56f4c50b9f87c6ef42a8c2ee9642e404889894524acd879dbfa301d88477 (from https://pypi.org/simple/damona/), version: 0.3.0
2020-08-06T17:20:22,195   Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz#sha256=a99d48dcfb750e079771ae08e93ade1b0223cc08744cc65bf5d9623771c74439 (from https://pypi.org/simple/damona/), version: 0.3.1
2020-08-06T17:20:22,197   Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e (from https://pypi.org/simple/damona/), version: 0.4.0
2020-08-06T17:20:22,211 Given no hashes to check 1 links for project 'damona': discarding no candidates
2020-08-06T17:20:22,213 Using version 0.4.0 (newest of versions: 0.4.0)
2020-08-06T17:20:22,221 Collecting damona==0.4.0
2020-08-06T17:20:22,227   Created temporary directory: /tmp/pip-unpack-c67_1s54
2020-08-06T17:20:22,904   Downloading damona-0.4.0.tar.gz (22 kB)
2020-08-06T17:20:23,181   Added damona==0.4.0 from https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e to build tracker '/tmp/pip-req-tracker-37iwefjm'
2020-08-06T17:20:23,183     Running setup.py (path:/tmp/pip-wheel-z4tlkrbw/damona/setup.py) egg_info for package damona
2020-08-06T17:20:23,184     Created temporary directory: /tmp/pip-pip-egg-info-_2_qtvna
2020-08-06T17:20:23,185     Running command python setup.py egg_info
2020-08-06T17:20:25,784     running egg_info
2020-08-06T17:20:25,791     creating /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info
2020-08-06T17:20:25,794     writing dependency_links to /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/dependency_links.txt
2020-08-06T17:20:25,798     writing entry points to /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/entry_points.txt
2020-08-06T17:20:25,801     writing top-level names to /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/top_level.txt
2020-08-06T17:20:25,806     writing requirements to /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/requires.txt
2020-08-06T17:20:25,809     writing /tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/PKG-INFO
2020-08-06T17:20:25,819     writing manifest file '/tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/SOURCES.txt'
2020-08-06T17:20:26,231     reading manifest file '/tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/SOURCES.txt'
2020-08-06T17:20:26,235     reading manifest template 'MANIFEST.in'
2020-08-06T17:20:26,241     warning: no previously-included files matching '__pycache__' found under directory '*'
2020-08-06T17:20:26,243     warning: no previously-included files matching '*pyc' found under directory '*'
2020-08-06T17:20:26,247     warning: no files found matching 'CONTRIBUTING.rst'
2020-08-06T17:20:26,248     warning: no files found matching 'LICENSE'
2020-08-06T17:20:26,250     warning: manifest_maker: MANIFEST.in, line 7: unknown action '<<<<<<<'

2020-08-06T17:20:26,251     warning: manifest_maker: MANIFEST.in, line 9: unknown action '======='

2020-08-06T17:20:26,253     warning: manifest_maker: MANIFEST.in, line 10: unknown action 'inclued'

2020-08-06T17:20:26,255     warning: manifest_maker: MANIFEST.in, line 11: unknown action '>>>>>>>'

2020-08-06T17:20:26,261     writing manifest file '/tmp/pip-pip-egg-info-_2_qtvna/damona.egg-info/SOURCES.txt'
2020-08-06T17:20:26,433   Source in /tmp/pip-wheel-z4tlkrbw/damona has version 0.4.0, which satisfies requirement damona==0.4.0 from https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e
2020-08-06T17:20:26,435   Removed damona==0.4.0 from https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz#sha256=533275af540923fe2ff8a67b0ee49852cfa322880906e32461b79019aecf444e from build tracker '/tmp/pip-req-tracker-37iwefjm'
2020-08-06T17:20:26,445 Building wheels for collected packages: damona
2020-08-06T17:20:26,457   Created temporary directory: /tmp/pip-wheel-aeyffydf
2020-08-06T17:20:26,459   Building wheel for damona (setup.py): started
2020-08-06T17:20:26,460   Destination directory: /tmp/pip-wheel-aeyffydf
2020-08-06T17:20:26,461   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-z4tlkrbw/damona/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-z4tlkrbw/damona/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-aeyffydf
2020-08-06T17:20:29,079   running bdist_wheel
2020-08-06T17:20:29,096   running build
2020-08-06T17:20:29,097   running build_py
2020-08-06T17:20:29,491   creating build
2020-08-06T17:20:29,493   creating build/lib
2020-08-06T17:20:29,496   creating build/lib/damona
2020-08-06T17:20:29,499   copying damona/registry.py -> build/lib/damona
2020-08-06T17:20:29,505   copying damona/environ.py -> build/lib/damona
2020-08-06T17:20:29,510   copying damona/__init__.py -> build/lib/damona
2020-08-06T17:20:29,516   copying damona/pull.py -> build/lib/damona
2020-08-06T17:20:29,524   copying damona/script.py -> build/lib/damona
2020-08-06T17:20:29,553   creating build/lib/damona/recipes
2020-08-06T17:20:29,565   copying damona/recipes/__init__.py -> build/lib/damona/recipes
2020-08-06T17:20:29,587   creating build/lib/damona/recipes/R
2020-08-06T17:20:29,590   copying damona/recipes/R/Singularity.R_3.6.3 -> build/lib/damona/recipes/R
2020-08-06T17:20:29,596   copying damona/recipes/R/Singularity.R_4.0.2 -> build/lib/damona/recipes/R
2020-08-06T17:20:29,601   creating build/lib/damona/recipes/fastqc
2020-08-06T17:20:29,604   copying damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/recipes/fastqc
2020-08-06T17:20:29,610   copying damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/recipes/fastqc
2020-08-06T17:20:29,615   creating build/lib/damona/recipes/damona
2020-08-06T17:20:29,617   copying damona/recipes/damona/Singularity.damona_0.3.0 -> build/lib/damona/recipes/damona
2020-08-06T17:20:29,622   creating build/lib/damona/recipes/kraken
2020-08-06T17:20:29,625   copying damona/recipes/kraken/Singularity.kraken_1.1 -> build/lib/damona/recipes/kraken
2020-08-06T17:20:29,630   copying damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/recipes/kraken
2020-08-06T17:20:29,635   creating build/lib/damona/recipes/prokka
2020-08-06T17:20:29,637   copying damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/recipes/prokka
2020-08-06T17:20:29,644   creating build/lib/damona/recipes/rnadiff
2020-08-06T17:20:29,646   copying damona/recipes/rnadiff/Singularity.rnadiff_1.7.0 -> build/lib/damona/recipes/rnadiff
2020-08-06T17:20:29,656   creating build/lib/damona/recipes/gffread
2020-08-06T17:20:29,660   copying damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/recipes/gffread
2020-08-06T17:20:29,667   creating build/lib/damona/recipes/salmon
2020-08-06T17:20:29,669   copying damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/recipes/salmon
2020-08-06T17:20:29,675   creating build/lib/damona/recipes/bcl2fastq
2020-08-06T17:20:29,677   copying damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/recipes/bcl2fastq
2020-08-06T17:20:29,683   creating build/lib/damona/recipes/conda
2020-08-06T17:20:29,685   copying damona/recipes/conda/Singularity.conda_4.7.12 -> build/lib/damona/recipes/conda
2020-08-06T17:20:29,693   copying damona/recipes/R/registry.yaml -> build/lib/damona/recipes/R
2020-08-06T17:20:29,698   copying damona/recipes/fastqc/registry.yaml -> build/lib/damona/recipes/fastqc
2020-08-06T17:20:29,702   copying damona/recipes/damona/registry.yaml -> build/lib/damona/recipes/damona
2020-08-06T17:20:29,707   copying damona/recipes/kraken/registry.yaml -> build/lib/damona/recipes/kraken
2020-08-06T17:20:29,712   copying damona/recipes/prokka/registry.yaml -> build/lib/damona/recipes/prokka
2020-08-06T17:20:29,717   copying damona/recipes/rnadiff/registry.yaml -> build/lib/damona/recipes/rnadiff
2020-08-06T17:20:29,723   copying damona/recipes/gffread/registry.yaml -> build/lib/damona/recipes/gffread
2020-08-06T17:20:29,729   copying damona/recipes/salmon/registry.yaml -> build/lib/damona/recipes/salmon
2020-08-06T17:20:29,736   copying damona/recipes/bcl2fastq/registry.yaml -> build/lib/damona/recipes/bcl2fastq
2020-08-06T17:20:29,742   copying damona/recipes/conda/registry.yaml -> build/lib/damona/recipes/conda
2020-08-06T17:20:29,755   installing to build/bdist.linux-armv7l/wheel
2020-08-06T17:20:29,756   running install
2020-08-06T17:20:29,758   running install_lib
2020-08-06T17:20:29,769   creating build/bdist.linux-armv7l
2020-08-06T17:20:29,771   creating build/bdist.linux-armv7l/wheel
2020-08-06T17:20:29,773   creating build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:29,778   copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:29,785   creating build/bdist.linux-armv7l/wheel/damona/recipes
2020-08-06T17:20:29,788   creating build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-06T17:20:29,790   copying build/lib/damona/recipes/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-06T17:20:29,795   copying build/lib/damona/recipes/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-06T17:20:29,799   copying build/lib/damona/recipes/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/recipes/R
2020-08-06T17:20:29,806   creating build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-06T17:20:29,808   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-06T17:20:29,814   copying build/lib/damona/recipes/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-06T17:20:29,820   copying build/lib/damona/recipes/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/fastqc
2020-08-06T17:20:29,827   creating build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-06T17:20:29,829   copying build/lib/damona/recipes/damona/Singularity.damona_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-06T17:20:29,835   copying build/lib/damona/recipes/damona/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/damona
2020-08-06T17:20:29,843   creating build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-06T17:20:29,845   copying build/lib/damona/recipes/kraken/Singularity.kraken_1.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-06T17:20:29,851   copying build/lib/damona/recipes/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-06T17:20:29,859   copying build/lib/damona/recipes/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/recipes/kraken
2020-08-06T17:20:29,867   creating build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-06T17:20:29,870   copying build/lib/damona/recipes/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-06T17:20:29,877   copying build/lib/damona/recipes/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/prokka
2020-08-06T17:20:29,885   creating build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2020-08-06T17:20:29,887   copying build/lib/damona/recipes/rnadiff/Singularity.rnadiff_1.7.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2020-08-06T17:20:29,892   copying build/lib/damona/recipes/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/rnadiff
2020-08-06T17:20:29,899   creating build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2020-08-06T17:20:29,902   copying build/lib/damona/recipes/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2020-08-06T17:20:29,907   copying build/lib/damona/recipes/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/recipes/gffread
2020-08-06T17:20:29,913   creating build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-06T17:20:29,915   copying build/lib/damona/recipes/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-06T17:20:29,934   copying build/lib/damona/recipes/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/salmon
2020-08-06T17:20:29,938   copying build/lib/damona/recipes/__init__.py -> build/bdist.linux-armv7l/wheel/damona/recipes
2020-08-06T17:20:29,957   creating build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-06T17:20:29,959   copying build/lib/damona/recipes/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-06T17:20:29,968   copying build/lib/damona/recipes/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/recipes/bcl2fastq
2020-08-06T17:20:29,974   creating build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-06T17:20:29,976   copying build/lib/damona/recipes/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-06T17:20:29,987   copying build/lib/damona/recipes/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/recipes/conda
2020-08-06T17:20:29,991   copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:29,996   copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:30,001   copying build/lib/damona/pull.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:30,008   copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona
2020-08-06T17:20:30,014   running install_egg_info
2020-08-06T17:20:30,082   running egg_info
2020-08-06T17:20:30,083   writing damona.egg-info/PKG-INFO
2020-08-06T17:20:30,089   writing top-level names to damona.egg-info/top_level.txt
2020-08-06T17:20:30,092   writing requirements to damona.egg-info/requires.txt
2020-08-06T17:20:30,095   writing dependency_links to damona.egg-info/dependency_links.txt
2020-08-06T17:20:30,097   writing entry points to damona.egg-info/entry_points.txt
2020-08-06T17:20:30,110   reading manifest file 'damona.egg-info/SOURCES.txt'
2020-08-06T17:20:30,116   reading manifest template 'MANIFEST.in'
2020-08-06T17:20:30,119   warning: no previously-included files matching '__pycache__' found under directory '*'
2020-08-06T17:20:30,121   warning: no previously-included files matching '*pyc' found under directory '*'
2020-08-06T17:20:30,123   warning: no files found matching 'CONTRIBUTING.rst'
2020-08-06T17:20:30,124   warning: no files found matching 'LICENSE'
2020-08-06T17:20:30,125   warning: manifest_maker: MANIFEST.in, line 7: unknown action '<<<<<<<'

2020-08-06T17:20:30,126   warning: manifest_maker: MANIFEST.in, line 9: unknown action '======='

2020-08-06T17:20:30,127   warning: manifest_maker: MANIFEST.in, line 10: unknown action 'inclued'

2020-08-06T17:20:30,128   warning: manifest_maker: MANIFEST.in, line 11: unknown action '>>>>>>>'

2020-08-06T17:20:30,136   writing manifest file 'damona.egg-info/SOURCES.txt'
2020-08-06T17:20:30,139   Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.4.0-py3.5.egg-info
2020-08-06T17:20:30,187   running install_scripts
2020-08-06T17:20:30,498   creating build/bdist.linux-armv7l/wheel/damona-0.4.0.dist-info/WHEEL
2020-08-06T17:20:30,910   Building wheel for damona (setup.py): finished with status 'done'
2020-08-06T17:20:30,914   Created wheel for damona: filename=damona-0.4.0-py3-none-any.whl size=30591 sha256=131eb91e5a14664d9a717ad2a12025787ed02a761336318d57de6076bbfe0695
2020-08-06T17:20:30,915   Stored in directory: /tmp/pip-ephem-wheel-cache-6m72t1ym/wheels/de/79/52/4052dfd2a497c83f34b8ccdbee889afaa3ebb6f87eaf79a40f
2020-08-06T17:20:30,919 Successfully built damona
2020-08-06T17:20:30,930 Removed build tracker: '/tmp/pip-req-tracker-37iwefjm'