2020-08-06T22:00:21,297 Created temporary directory: /tmp/pip-ephem-wheel-cache-w78_neuz
2020-08-06T22:00:21,304 Created temporary directory: /tmp/pip-req-tracker-uhwsng1n
2020-08-06T22:00:21,305 Initialized build tracking at /tmp/pip-req-tracker-uhwsng1n
2020-08-06T22:00:21,305 Created build tracker: /tmp/pip-req-tracker-uhwsng1n
2020-08-06T22:00:21,305 Entered build tracker: /tmp/pip-req-tracker-uhwsng1n
2020-08-06T22:00:21,307 Created temporary directory: /tmp/pip-wheel-6_sgij7r
2020-08-06T22:00:21,327 1 location(s) to search for versions of scipion-em-eman2:
2020-08-06T22:00:21,327 * https://pypi.org/simple/scipion-em-eman2/
2020-08-06T22:00:21,328 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-eman2/
2020-08-06T22:00:21,330 Getting page https://pypi.org/simple/scipion-em-eman2/
2020-08-06T22:00:21,334 Found index url https://pypi.org/simple
2020-08-06T22:00:21,697   Found link https://files.pythonhosted.org/packages/a7/0f/7d43b6c07af0e5fa106f0b1fc01de1a6a99e6232a0436fcd20abffe580b5/scipion-em-eman2-1.0.0.tar.gz#sha256=4d20f96f49786911b7d7ef56ff2f7a82ec7f923f3db64d3f00a784bf647353d6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.0
2020-08-06T22:00:21,698   Found link https://files.pythonhosted.org/packages/80/b7/9196fe07a94d2a0fa1a791afd66470766a02cace55303598b9afd5e67b04/scipion-em-eman2-1.0.1.tar.gz#sha256=ac698992904e0677790ab735d662185742cc4902fd0fd8e246640e4e898520b7 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.1
2020-08-06T22:00:21,699   Found link https://files.pythonhosted.org/packages/00/80/5ab64971bf1409b607df23af77185cfe2a05a9d274f3104d83d1a21fbd62/scipion-em-eman2-1.0.2.tar.gz#sha256=6bea98c34bebbb95ddd7e16bf347aac6f6b1bd13298677ec792c0eb829f1c475 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.2
2020-08-06T22:00:21,700   Found link https://files.pythonhosted.org/packages/4b/76/6cb8d5d87de446dec6cc0cb8ba31c717d43f3e1b43b3299d22791a3066c9/scipion-em-eman2-1.0.3.tar.gz#sha256=1066b6c6bca5c5d36179df756e0374c3e82943b516260560129ecbffe3f8c05c (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.3
2020-08-06T22:00:21,701   Found link https://files.pythonhosted.org/packages/0a/0d/25e486c760163db74249637611f8670af033a8897027f032e1630d1f8bf4/scipion-em-eman2-1.0.4.tar.gz#sha256=c0ced64267050009ab303e20c4b6497a49c488eb67e75519da851db3ec054ed5 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.4
2020-08-06T22:00:21,701   Found link https://files.pythonhosted.org/packages/e3/5a/2192c7e097a8db09d3ea10c795b2e220ea059882d1a918dd84aff6439d79/scipion-em-eman2-1.0.5.tar.gz#sha256=98c2eb48fd8c6ffa1d4fdf281076e63591e4106074872bb18bd53abec3fbdfd6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.5
2020-08-06T22:00:21,702   Found link https://files.pythonhosted.org/packages/65/16/5e861f129229ffeeea4dad00f82f6af80c39a6f0ee6379f3879af1d3104d/scipion-em-eman2-1.0.6.tar.gz#sha256=8741612d171a3f2569a6db175e7c10d416b3ddf7b5d4511200bf33434aea34e6 (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.6
2020-08-06T22:00:21,703   Found link https://files.pythonhosted.org/packages/66/9a/cbb2f0f516e8efeafd12301f8ff597dc1d28e2969d4628f3baa7ed89f51a/scipion-em-eman2-1.0.7.tar.gz#sha256=a25d3e016ba6c445d13a03ba197a776b45ee98aaf342465cbbbfd34c8f93b20b (from https://pypi.org/simple/scipion-em-eman2/), version: 1.0.7
2020-08-06T22:00:21,704   Found link https://files.pythonhosted.org/packages/74/73/a8f63d42a38ce20b4cb0261c6547a9f1e61926625b21727263721e44694f/scipion-em-eman2-3.1.0.tar.gz#sha256=8bb9aad977add51e8417262d77f3f73b011edb7fbdd9f32c75ac195145464fee (from https://pypi.org/simple/scipion-em-eman2/), version: 3.1.0
2020-08-06T22:00:21,705   Found link https://files.pythonhosted.org/packages/3e/43/8d9e29924bc9148ddda81e6ab396543d31f2cbbf01896d87f979e3fd2b9c/scipion-em-eman2-3.1.1.tar.gz#sha256=87b633aaebe1d6a700d3eec023e9cc1e40438cbbeba847807f4c6a82dc6891ad (from https://pypi.org/simple/scipion-em-eman2/), version: 3.1.1
2020-08-06T22:00:21,718 Given no hashes to check 1 links for project 'scipion-em-eman2': discarding no candidates
2020-08-06T22:00:21,720 Using version 3.1.1 (newest of versions: 3.1.1)
2020-08-06T22:00:21,726 Collecting scipion-em-eman2==3.1.1
2020-08-06T22:00:21,731   Created temporary directory: /tmp/pip-unpack-8ftai8vi
2020-08-06T22:00:22,672   Downloading scipion-em-eman2-3.1.1.tar.gz (132 kB)
2020-08-06T22:00:23,061   Added scipion-em-eman2==3.1.1 from https://files.pythonhosted.org/packages/3e/43/8d9e29924bc9148ddda81e6ab396543d31f2cbbf01896d87f979e3fd2b9c/scipion-em-eman2-3.1.1.tar.gz#sha256=87b633aaebe1d6a700d3eec023e9cc1e40438cbbeba847807f4c6a82dc6891ad to build tracker '/tmp/pip-req-tracker-uhwsng1n'
2020-08-06T22:00:23,063     Running setup.py (path:/tmp/pip-wheel-6_sgij7r/scipion-em-eman2/setup.py) egg_info for package scipion-em-eman2
2020-08-06T22:00:23,064     Created temporary directory: /tmp/pip-pip-egg-info-c_u863qp
2020-08-06T22:00:23,066     Running command python setup.py egg_info
2020-08-06T22:00:25,232     running egg_info
2020-08-06T22:00:25,239     creating /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info
2020-08-06T22:00:25,244     writing entry points to /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/entry_points.txt
2020-08-06T22:00:25,247     writing dependency_links to /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/dependency_links.txt
2020-08-06T22:00:25,250     writing requirements to /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/requires.txt
2020-08-06T22:00:25,253     writing /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/PKG-INFO
2020-08-06T22:00:25,260     writing top-level names to /tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/top_level.txt
2020-08-06T22:00:25,264     writing manifest file '/tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/SOURCES.txt'
2020-08-06T22:00:25,632     reading manifest file '/tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/SOURCES.txt'
2020-08-06T22:00:25,636     reading manifest template 'MANIFEST.in'
2020-08-06T22:00:25,648     writing manifest file '/tmp/pip-pip-egg-info-c_u863qp/scipion_em_eman2.egg-info/SOURCES.txt'
2020-08-06T22:00:25,789   Source in /tmp/pip-wheel-6_sgij7r/scipion-em-eman2 has version 3.1.1, which satisfies requirement scipion-em-eman2==3.1.1 from https://files.pythonhosted.org/packages/3e/43/8d9e29924bc9148ddda81e6ab396543d31f2cbbf01896d87f979e3fd2b9c/scipion-em-eman2-3.1.1.tar.gz#sha256=87b633aaebe1d6a700d3eec023e9cc1e40438cbbeba847807f4c6a82dc6891ad
2020-08-06T22:00:25,790   Removed scipion-em-eman2==3.1.1 from https://files.pythonhosted.org/packages/3e/43/8d9e29924bc9148ddda81e6ab396543d31f2cbbf01896d87f979e3fd2b9c/scipion-em-eman2-3.1.1.tar.gz#sha256=87b633aaebe1d6a700d3eec023e9cc1e40438cbbeba847807f4c6a82dc6891ad from build tracker '/tmp/pip-req-tracker-uhwsng1n'
2020-08-06T22:00:25,796 Building wheels for collected packages: scipion-em-eman2
2020-08-06T22:00:25,805   Created temporary directory: /tmp/pip-wheel-4feevaqm
2020-08-06T22:00:25,806   Building wheel for scipion-em-eman2 (setup.py): started
2020-08-06T22:00:25,807   Destination directory: /tmp/pip-wheel-4feevaqm
2020-08-06T22:00:25,807   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6_sgij7r/scipion-em-eman2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6_sgij7r/scipion-em-eman2/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4feevaqm
2020-08-06T22:00:27,930   running bdist_wheel
2020-08-06T22:00:27,945   running build
2020-08-06T22:00:27,946   running build_py
2020-08-06T22:00:28,282   creating build
2020-08-06T22:00:28,283   creating build/lib
2020-08-06T22:00:28,284   creating build/lib/eman2
2020-08-06T22:00:28,287   copying eman2/e2converter.py -> build/lib/eman2
2020-08-06T22:00:28,293   copying eman2/wizards.py -> build/lib/eman2
2020-08-06T22:00:28,298   copying eman2/constants.py -> build/lib/eman2
2020-08-06T22:00:28,302   copying eman2/bibtex.py -> build/lib/eman2
2020-08-06T22:00:28,306   copying eman2/__init__.py -> build/lib/eman2
2020-08-06T22:00:28,313   copying eman2/e2ih.py -> build/lib/eman2
2020-08-06T22:00:28,323   creating build/lib/eman2/protocols
2020-08-06T22:00:28,326   copying eman2/protocols/protocol_tomo_extraction.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,333   copying eman2/protocols/protocol_reconstruct.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,339   copying eman2/protocols/protocol_ctf.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,344   copying eman2/protocols/protocol_tomo_template_match.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,350   copying eman2/protocols/protocol_initialmodel_sgd.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,357   copying eman2/protocols/protocol_refine2d_bispec.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,365   copying eman2/protocols/protocol_refine2d.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,375   copying eman2/protocols/protocol_initialmodel.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,383   copying eman2/protocols/__init__.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,389   copying eman2/protocols/protocol_tomo_boxing.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,395   copying eman2/protocols/protocol_boxing.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,401   copying eman2/protocols/protocol_tomo_reconstruction.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,408   copying eman2/protocols/protocol_autopick_sparx.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,415   copying eman2/protocols/protocol_tiltvalidate.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,423   copying eman2/protocols/protocol_autopick_boxer.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,431   copying eman2/protocols/protocol_tomo_subtomogram_refinement.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,438   copying eman2/protocols/protocol_refineasy.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,445   copying eman2/protocols/protocol_tomo_initialmodel.py -> build/lib/eman2/protocols
2020-08-06T22:00:28,454   creating build/lib/eman2/viewers
2020-08-06T22:00:28,458   copying eman2/viewers/viewers_data.py -> build/lib/eman2/viewers
2020-08-06T22:00:28,466   copying eman2/viewers/views_tkinter_tree.py -> build/lib/eman2/viewers
2020-08-06T22:00:28,472   copying eman2/viewers/__init__.py -> build/lib/eman2/viewers
2020-08-06T22:00:28,477   copying eman2/viewers/viewers.py -> build/lib/eman2/viewers
2020-08-06T22:00:28,487   creating build/lib/eman2/convert
2020-08-06T22:00:28,490   copying eman2/convert/convert.py -> build/lib/eman2/convert
2020-08-06T22:00:28,497   copying eman2/convert/__init__.py -> build/lib/eman2/convert
2020-08-06T22:00:28,502   copying eman2/convert/dataimport.py -> build/lib/eman2/convert
2020-08-06T22:00:28,509   creating build/lib/eman2/tests
2020-08-06T22:00:28,512   copying eman2/tests/__init__.py -> build/lib/eman2/tests
2020-08-06T22:00:28,519   copying eman2/tests/test_protocols_eman.py -> build/lib/eman2/tests
2020-08-06T22:00:28,534   copying eman2/eman2_logo.png -> build/lib/eman2
2020-08-06T22:00:28,543   copying eman2/protocols.conf -> build/lib/eman2
2020-08-06T22:00:28,563   installing to build/bdist.linux-armv7l/wheel
2020-08-06T22:00:28,564   running install
2020-08-06T22:00:28,568   running install_lib
2020-08-06T22:00:28,577   creating build/bdist.linux-armv7l
2020-08-06T22:00:28,578   creating build/bdist.linux-armv7l/wheel
2020-08-06T22:00:28,583   creating build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,586   copying build/lib/eman2/e2converter.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,592   copying build/lib/eman2/wizards.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,598   copying build/lib/eman2/constants.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,604   copying build/lib/eman2/bibtex.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,609   copying build/lib/eman2/eman2_logo.png -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,618   copying build/lib/eman2/__init__.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,624   copying build/lib/eman2/e2ih.py -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,629   copying build/lib/eman2/protocols.conf -> build/bdist.linux-armv7l/wheel/eman2
2020-08-06T22:00:28,636   creating build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,639   copying build/lib/eman2/protocols/protocol_tomo_extraction.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,646   copying build/lib/eman2/protocols/protocol_reconstruct.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,652   copying build/lib/eman2/protocols/protocol_ctf.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,660   copying build/lib/eman2/protocols/protocol_tomo_template_match.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,668   copying build/lib/eman2/protocols/protocol_initialmodel_sgd.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,675   copying build/lib/eman2/protocols/protocol_refine2d_bispec.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,685   copying build/lib/eman2/protocols/protocol_refine2d.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,695   copying build/lib/eman2/protocols/protocol_initialmodel.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,702   copying build/lib/eman2/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,707   copying build/lib/eman2/protocols/protocol_tomo_boxing.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,713   copying build/lib/eman2/protocols/protocol_boxing.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,720   copying build/lib/eman2/protocols/protocol_tomo_reconstruction.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,728   copying build/lib/eman2/protocols/protocol_autopick_sparx.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,736   copying build/lib/eman2/protocols/protocol_tiltvalidate.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,743   copying build/lib/eman2/protocols/protocol_autopick_boxer.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,749   copying build/lib/eman2/protocols/protocol_tomo_subtomogram_refinement.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,755   copying build/lib/eman2/protocols/protocol_refineasy.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,764   copying build/lib/eman2/protocols/protocol_tomo_initialmodel.py -> build/bdist.linux-armv7l/wheel/eman2/protocols
2020-08-06T22:00:28,773   creating build/bdist.linux-armv7l/wheel/eman2/viewers
2020-08-06T22:00:28,777   copying build/lib/eman2/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/eman2/viewers
2020-08-06T22:00:28,783   copying build/lib/eman2/viewers/views_tkinter_tree.py -> build/bdist.linux-armv7l/wheel/eman2/viewers
2020-08-06T22:00:28,789   copying build/lib/eman2/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/viewers
2020-08-06T22:00:28,793   copying build/lib/eman2/viewers/viewers.py -> build/bdist.linux-armv7l/wheel/eman2/viewers
2020-08-06T22:00:28,805   creating build/bdist.linux-armv7l/wheel/eman2/convert
2020-08-06T22:00:28,808   copying build/lib/eman2/convert/convert.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2020-08-06T22:00:28,818   copying build/lib/eman2/convert/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2020-08-06T22:00:28,824   copying build/lib/eman2/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/eman2/convert
2020-08-06T22:00:28,830   creating build/bdist.linux-armv7l/wheel/eman2/tests
2020-08-06T22:00:28,833   copying build/lib/eman2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/eman2/tests
2020-08-06T22:00:28,838   copying build/lib/eman2/tests/test_protocols_eman.py -> build/bdist.linux-armv7l/wheel/eman2/tests
2020-08-06T22:00:28,848   running install_egg_info
2020-08-06T22:00:28,898   running egg_info
2020-08-06T22:00:28,901   writing requirements to scipion_em_eman2.egg-info/requires.txt
2020-08-06T22:00:28,904   writing entry points to scipion_em_eman2.egg-info/entry_points.txt
2020-08-06T22:00:28,907   writing scipion_em_eman2.egg-info/PKG-INFO
2020-08-06T22:00:28,912   writing top-level names to scipion_em_eman2.egg-info/top_level.txt
2020-08-06T22:00:28,916   writing dependency_links to scipion_em_eman2.egg-info/dependency_links.txt
2020-08-06T22:00:28,940   reading manifest file 'scipion_em_eman2.egg-info/SOURCES.txt'
2020-08-06T22:00:28,947   reading manifest template 'MANIFEST.in'
2020-08-06T22:00:28,960   writing manifest file 'scipion_em_eman2.egg-info/SOURCES.txt'
2020-08-06T22:00:28,964   Copying scipion_em_eman2.egg-info to build/bdist.linux-armv7l/wheel/scipion_em_eman2-3.1.1-py3.5.egg-info
2020-08-06T22:00:28,995   running install_scripts
2020-08-06T22:00:29,182   creating build/bdist.linux-armv7l/wheel/scipion_em_eman2-3.1.1.dist-info/WHEEL
2020-08-06T22:00:29,600   Building wheel for scipion-em-eman2 (setup.py): finished with status 'done'
2020-08-06T22:00:29,606   Created wheel for scipion-em-eman2: filename=scipion_em_eman2-3.1.1-py3-none-any.whl size=155034 sha256=2f7b4c2834889aeb2fd6167a5be3c88db507a48bc7de4fd7e20e59d0f41115e1
2020-08-06T22:00:29,607   Stored in directory: /tmp/pip-ephem-wheel-cache-w78_neuz/wheels/13/3f/42/4d75b7cc159fb461274b7e48ab804dafca143ecefa80bf145b
2020-08-06T22:00:29,611 Successfully built scipion-em-eman2
2020-08-06T22:00:29,644 Removed build tracker: '/tmp/pip-req-tracker-uhwsng1n'