2020-08-10T17:22:27,456 Created temporary directory: /tmp/pip-ephem-wheel-cache-gvjbc88n
2020-08-10T17:22:27,462 Created temporary directory: /tmp/pip-req-tracker-ko3fnrwd
2020-08-10T17:22:27,463 Initialized build tracking at /tmp/pip-req-tracker-ko3fnrwd
2020-08-10T17:22:27,464 Created build tracker: /tmp/pip-req-tracker-ko3fnrwd
2020-08-10T17:22:27,464 Entered build tracker: /tmp/pip-req-tracker-ko3fnrwd
2020-08-10T17:22:27,466 Created temporary directory: /tmp/pip-wheel-7ehntsep
2020-08-10T17:22:27,482 1 location(s) to search for versions of mgatk:
2020-08-10T17:22:27,482 * https://pypi.org/simple/mgatk/
2020-08-10T17:22:27,483 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2020-08-10T17:22:27,485 Getting page https://pypi.org/simple/mgatk/
2020-08-10T17:22:27,490 Found index url https://pypi.org/simple
2020-08-10T17:22:27,820   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2020-08-10T17:22:27,821   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2020-08-10T17:22:27,822   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2020-08-10T17:22:27,823   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2020-08-10T17:22:27,824   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2020-08-10T17:22:27,824   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2020-08-10T17:22:27,825   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2020-08-10T17:22:27,826   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2020-08-10T17:22:27,827   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2020-08-10T17:22:27,839 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2020-08-10T17:22:27,841 Using version 0.5.7 (newest of versions: 0.5.7)
2020-08-10T17:22:27,849 Collecting mgatk==0.5.7
2020-08-10T17:22:27,854   Created temporary directory: /tmp/pip-unpack-6w8w3bb4
2020-08-10T17:22:27,943   Downloading mgatk-0.5.7.tar.gz (14.3 MB)
2020-08-10T17:22:33,679   Added mgatk==0.5.7 from https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df to build tracker '/tmp/pip-req-tracker-ko3fnrwd'
2020-08-10T17:22:33,682     Running setup.py (path:/tmp/pip-wheel-7ehntsep/mgatk/setup.py) egg_info for package mgatk
2020-08-10T17:22:33,683     Created temporary directory: /tmp/pip-pip-egg-info-en_bz7ph
2020-08-10T17:22:33,684     Running command python setup.py egg_info
2020-08-10T17:22:35,745     running egg_info
2020-08-10T17:22:35,751     creating /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info
2020-08-10T17:22:35,756     writing entry points to /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/entry_points.txt
2020-08-10T17:22:35,759     writing dependency_links to /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/dependency_links.txt
2020-08-10T17:22:35,761     writing /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/PKG-INFO
2020-08-10T17:22:35,767     writing requirements to /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/requires.txt
2020-08-10T17:22:35,768     writing top-level names to /tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/top_level.txt
2020-08-10T17:22:35,772     writing manifest file '/tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/SOURCES.txt'
2020-08-10T17:22:36,124     reading manifest file '/tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/SOURCES.txt'
2020-08-10T17:22:36,127     reading manifest template 'MANIFEST.in'
2020-08-10T17:22:36,130     no previously-included directories found matching 'mgatk.egg-info/'
2020-08-10T17:22:36,131     no previously-included directories found matching 'tests/'
2020-08-10T17:22:36,132     no previously-included directories found matching '*.DS_Store'
2020-08-10T17:22:36,228     writing manifest file '/tmp/pip-pip-egg-info-en_bz7ph/mgatk.egg-info/SOURCES.txt'
2020-08-10T17:22:36,364   Source in /tmp/pip-wheel-7ehntsep/mgatk has version 0.5.7, which satisfies requirement mgatk==0.5.7 from https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df
2020-08-10T17:22:36,366   Removed mgatk==0.5.7 from https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df from build tracker '/tmp/pip-req-tracker-ko3fnrwd'
2020-08-10T17:22:36,370 Building wheels for collected packages: mgatk
2020-08-10T17:22:36,379   Created temporary directory: /tmp/pip-wheel-sj1mmwo8
2020-08-10T17:22:36,380   Building wheel for mgatk (setup.py): started
2020-08-10T17:22:36,380   Destination directory: /tmp/pip-wheel-sj1mmwo8
2020-08-10T17:22:36,381   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7ehntsep/mgatk/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7ehntsep/mgatk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sj1mmwo8
2020-08-10T17:22:38,586   running bdist_wheel
2020-08-10T17:22:38,601   running build
2020-08-10T17:22:38,602   running build_py
2020-08-10T17:22:38,942   creating build
2020-08-10T17:22:38,943   creating build/lib
2020-08-10T17:22:38,944   creating build/lib/mgatk
2020-08-10T17:22:38,947   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2020-08-10T17:22:38,952   copying mgatk/cli.py -> build/lib/mgatk
2020-08-10T17:22:38,959   copying mgatk/__init__.py -> build/lib/mgatk
2020-08-10T17:22:38,962   running egg_info
2020-08-10T17:22:38,990   writing top-level names to mgatk.egg-info/top_level.txt
2020-08-10T17:22:38,993   writing entry points to mgatk.egg-info/entry_points.txt
2020-08-10T17:22:38,998   writing mgatk.egg-info/PKG-INFO
2020-08-10T17:22:39,001   writing dependency_links to mgatk.egg-info/dependency_links.txt
2020-08-10T17:22:39,003   writing requirements to mgatk.egg-info/requires.txt
2020-08-10T17:22:39,013   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-10T17:22:39,020   reading manifest template 'MANIFEST.in'
2020-08-10T17:22:39,023   no previously-included directories found matching 'tests/'
2020-08-10T17:22:39,024   no previously-included directories found matching '*.DS_Store'
2020-08-10T17:22:39,105   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-10T17:22:39,121   copying mgatk/.DS_Store -> build/lib/mgatk
2020-08-10T17:22:39,127   copying mgatk/devnotes.md -> build/lib/mgatk
2020-08-10T17:22:39,132   creating build/lib/mgatk/__pycache__
2020-08-10T17:22:39,134   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,139   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,144   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,150   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,158   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,166   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-10T17:22:39,174   creating build/lib/mgatk/bin
2020-08-10T17:22:39,176   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2020-08-10T17:22:39,183   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2020-08-10T17:22:40,594   creating build/lib/mgatk/bin/R
2020-08-10T17:22:40,595   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2020-08-10T17:22:40,602   creating build/lib/mgatk/bin/anno
2020-08-10T17:22:40,605   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2020-08-10T17:22:40,613   creating build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,616   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,625   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,634   copying mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,640   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,649   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,658   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,667   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,676   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,685   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,694   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,703   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,712   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-10T17:22:40,721   creating build/lib/mgatk/bin/python
2020-08-10T17:22:40,724   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,731   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,738   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,744   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,751   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,758   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,766   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2020-08-10T17:22:40,773   creating build/lib/mgatk/bin/snake
2020-08-10T17:22:40,775   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2020-08-10T17:22:40,783   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2020-08-10T17:22:40,789   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2020-08-10T17:22:40,797   creating build/lib/mgatk/del
2020-08-10T17:22:40,799   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2020-08-10T17:22:40,808   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2020-08-10T17:22:40,815   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2020-08-10T17:22:40,822   creating build/lib/mgatk/del/__pycache__
2020-08-10T17:22:40,825   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-10T17:22:40,833   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-10T17:22:40,840   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2020-08-10T17:22:40,847   creating build/lib/mgatk/del/bulk_del
2020-08-10T17:22:40,849   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2020-08-10T17:22:40,857   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2020-08-10T17:22:40,864   creating build/lib/mgatk/del/singles_del
2020-08-10T17:22:40,867   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2020-08-10T17:22:40,874   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2020-08-10T17:22:40,881   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2020-08-10T17:22:40,898   installing to build/bdist.linux-armv7l/wheel
2020-08-10T17:22:40,899   running install
2020-08-10T17:22:40,901   running install_lib
2020-08-10T17:22:40,907   creating build/bdist.linux-armv7l
2020-08-10T17:22:40,908   creating build/bdist.linux-armv7l/wheel
2020-08-10T17:22:40,912   creating build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:40,914   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:40,921   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,923   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,929   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,935   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,943   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,948   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,954   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-10T17:22:40,962   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:40,971   creating build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-10T17:22:40,975   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-10T17:22:40,978   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-10T17:22:40,985   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-10T17:22:40,991   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-10T17:22:40,997   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-10T17:22:41,005   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-10T17:22:41,008   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-10T17:22:41,015   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-10T17:22:41,021   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-10T17:22:41,028   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-10T17:22:41,036   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-10T17:22:41,038   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-10T17:22:41,044   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-10T17:22:41,050   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-10T17:22:41,056   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:41,065   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:41,070   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-10T17:22:41,077   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-10T17:22:41,081   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-10T17:22:41,084   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-10T17:22:41,093   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,096   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,104   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,112   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,120   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,128   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,136   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,141   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,149   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,157   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,163   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,169   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,175   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-10T17:22:41,182   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-10T17:22:42,599   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-10T17:22:42,601   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-10T17:22:42,609   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-10T17:22:42,618   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,620   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,627   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,633   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,639   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,644   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,650   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,656   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-10T17:22:42,663   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-10T17:22:42,665   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-10T17:22:42,672   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-10T17:22:42,678   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-10T17:22:42,683   running install_egg_info
2020-08-10T17:22:42,710   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.5.7-py3.5.egg-info
2020-08-10T17:22:42,751   running install_scripts
2020-08-10T17:22:42,959   creating build/bdist.linux-armv7l/wheel/mgatk-0.5.7.dist-info/WHEEL
2020-08-10T17:22:47,892   Building wheel for mgatk (setup.py): finished with status 'done'
2020-08-10T17:22:48,129   Created wheel for mgatk: filename=mgatk-0.5.7-py2.py3-none-any.whl size=14336977 sha256=95b59ea0189b6f7d87453823792ba21b9f45deaaeb5a205ccb173694fd16c43d
2020-08-10T17:22:48,130   Stored in directory: /tmp/pip-ephem-wheel-cache-gvjbc88n/wheels/77/30/27/22321b73832b16b1df568dc5a4a3584f09b29ab2d1291a67f1
2020-08-10T17:22:48,134 Successfully built mgatk
2020-08-10T17:22:50,631 Removed build tracker: '/tmp/pip-req-tracker-ko3fnrwd'