2020-08-10T17:31:54,113 Created temporary directory: /tmp/pip-ephem-wheel-cache-hiqnd1n3 2020-08-10T17:31:54,119 Created temporary directory: /tmp/pip-req-tracker-mjyficzf 2020-08-10T17:31:54,119 Initialized build tracking at /tmp/pip-req-tracker-mjyficzf 2020-08-10T17:31:54,120 Created build tracker: /tmp/pip-req-tracker-mjyficzf 2020-08-10T17:31:54,121 Entered build tracker: /tmp/pip-req-tracker-mjyficzf 2020-08-10T17:31:54,122 Created temporary directory: /tmp/pip-wheel-9lrokgrp 2020-08-10T17:31:54,137 1 location(s) to search for versions of sequana: 2020-08-10T17:31:54,137 * https://pypi.org/simple/sequana/ 2020-08-10T17:31:54,138 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2020-08-10T17:31:54,140 Getting page https://pypi.org/simple/sequana/ 2020-08-10T17:31:54,144 Found index url https://pypi.org/simple 2020-08-10T17:31:54,489 Found link 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https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz#sha256=11c51f29d0d696451896fc56e940e059d191b6f17616776e08eb5b1c5ac5dda5 (from https://pypi.org/simple/sequana/), version: 0.8.2 2020-08-10T17:31:54,525 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz#sha256=4c47176589613a57227e742b9f31144f6714dad53078708baa4a3d1ea3a16994 (from https://pypi.org/simple/sequana/), version: 0.8.3 2020-08-10T17:31:54,526 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz#sha256=a11baec596d779f399512d3fe853ecdd582a16691880c495509d34d8cc66e2e7 (from https://pypi.org/simple/sequana/), version: 0.8.4 2020-08-10T17:31:54,527 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz#sha256=a1c0b4f766b774380d74c90cc4af7b6c222a2d1630c0be4a906fff8d796ffe08 (from https://pypi.org/simple/sequana/), version: 0.8.5 2020-08-10T17:31:54,528 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz#sha256=fa651ddd8a29046d6e5aec081ad30b8b0469b8e81fb2a59cf4d8bb20c4fe5a2f (from https://pypi.org/simple/sequana/), version: 0.8.6 2020-08-10T17:31:54,528 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz#sha256=2f649b914ea2fe9277e7c5257d908997cc0f7a980e569c89f2a3a2b8ebdd83f4 (from https://pypi.org/simple/sequana/), version: 0.9.0 2020-08-10T17:31:54,529 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a (from https://pypi.org/simple/sequana/), version: 0.9.1 2020-08-10T17:31:54,558 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2020-08-10T17:31:54,560 Using version 0.9.1 (newest of versions: 0.9.1) 2020-08-10T17:31:54,567 Collecting sequana==0.9.1 2020-08-10T17:31:54,572 Created temporary directory: /tmp/pip-unpack-rwd42yb7 2020-08-10T17:31:54,649 Downloading sequana-0.9.1.tar.gz (21.0 MB) 2020-08-10T17:32:03,505 Added sequana==0.9.1 from https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a to build tracker '/tmp/pip-req-tracker-mjyficzf' 2020-08-10T17:32:03,507 Running setup.py (path:/tmp/pip-wheel-9lrokgrp/sequana/setup.py) egg_info for package sequana 2020-08-10T17:32:03,509 Created temporary directory: /tmp/pip-pip-egg-info-_z9jzgwk 2020-08-10T17:32:03,510 Running command python setup.py egg_info 2020-08-10T17:32:05,584 running egg_info 2020-08-10T17:32:05,589 creating /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info 2020-08-10T17:32:05,592 writing entry points to /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/entry_points.txt 2020-08-10T17:32:05,595 writing top-level names to /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/top_level.txt 2020-08-10T17:32:05,597 writing requirements to /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/requires.txt 2020-08-10T17:32:05,599 writing dependency_links to /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/dependency_links.txt 2020-08-10T17:32:05,600 writing /tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/PKG-INFO 2020-08-10T17:32:05,607 writing manifest file '/tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/SOURCES.txt' 2020-08-10T17:32:06,486 reading manifest file '/tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/SOURCES.txt' 2020-08-10T17:32:06,489 reading manifest template 'MANIFEST.in' 2020-08-10T17:32:06,496 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-08-10T17:32:06,499 warning: no previously-included files matching '*pyc' found under directory '*' 2020-08-10T17:32:07,029 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-08-10T17:32:07,032 warning: no previously-included files matching '*' found under directory 'test' 2020-08-10T17:32:07,035 warning: no previously-included files found matching 'sequana/rm2.py' 2020-08-10T17:32:07,084 writing manifest file '/tmp/pip-pip-egg-info-_z9jzgwk/sequana.egg-info/SOURCES.txt' 2020-08-10T17:32:07,214 Source in /tmp/pip-wheel-9lrokgrp/sequana has version 0.9.1, which satisfies requirement sequana==0.9.1 from https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a 2020-08-10T17:32:07,216 Removed sequana==0.9.1 from https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz#sha256=22c054c04e8584c61e1b9838c96aa2bd0aee08b42c4852614ed046e076b4723a from build tracker '/tmp/pip-req-tracker-mjyficzf' 2020-08-10T17:32:07,220 Building wheels for collected packages: sequana 2020-08-10T17:32:07,227 Created temporary directory: /tmp/pip-wheel-hi2vx2mv 2020-08-10T17:32:07,228 Building wheel for sequana (setup.py): started 2020-08-10T17:32:07,228 Destination directory: /tmp/pip-wheel-hi2vx2mv 2020-08-10T17:32:07,229 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9lrokgrp/sequana/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9lrokgrp/sequana/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-hi2vx2mv 2020-08-10T17:32:09,329 running bdist_wheel 2020-08-10T17:32:09,343 running build 2020-08-10T17:32:09,344 running build_py 2020-08-10T17:32:09,639 creating build 2020-08-10T17:32:09,640 creating build/lib 2020-08-10T17:32:09,641 creating build/lib/sequana 2020-08-10T17:32:09,643 copying sequana/sniffer.py -> build/lib/sequana 2020-08-10T17:32:09,646 copying sequana/find_motif.py -> build/lib/sequana 2020-08-10T17:32:09,650 copying sequana/kraken_builder.py -> build/lib/sequana 2020-08-10T17:32:09,654 copying sequana/adapters.py -> build/lib/sequana 2020-08-10T17:32:09,658 copying sequana/mh.py -> build/lib/sequana 2020-08-10T17:32:09,662 copying sequana/trf.py -> build/lib/sequana 2020-08-10T17:32:09,665 copying sequana/iotools.py -> build/lib/sequana 2020-08-10T17:32:09,669 copying sequana/rnadiff.py -> build/lib/sequana 2020-08-10T17:32:09,674 copying sequana/snaketools.py -> build/lib/sequana 2020-08-10T17:32:09,680 copying sequana/vcftools.py -> build/lib/sequana 2020-08-10T17:32:09,683 copying sequana/iem.py -> build/lib/sequana 2020-08-10T17:32:09,687 copying sequana/compare.py -> build/lib/sequana 2020-08-10T17:32:09,691 copying sequana/misc.py -> build/lib/sequana 2020-08-10T17:32:09,694 copying sequana/kmer.py -> build/lib/sequana 2020-08-10T17:32:09,696 copying sequana/jsontool.py -> build/lib/sequana 2020-08-10T17:32:09,699 copying sequana/bedtools.py -> build/lib/sequana 2020-08-10T17:32:09,706 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2020-08-10T17:32:09,710 copying sequana/phred.py -> build/lib/sequana 2020-08-10T17:32:09,713 copying sequana/coverage.py -> build/lib/sequana 2020-08-10T17:32:09,716 copying sequana/iuapc.py -> build/lib/sequana 2020-08-10T17:32:09,720 copying sequana/cnv.py -> build/lib/sequana 2020-08-10T17:32:09,722 copying sequana/kraken.py -> build/lib/sequana 2020-08-10T17:32:09,728 copying sequana/pipelines_common.py -> build/lib/sequana 2020-08-10T17:32:09,733 copying sequana/fastqc.py -> build/lib/sequana 2020-08-10T17:32:09,736 copying sequana/bamtools.py -> build/lib/sequana 2020-08-10T17:32:09,742 copying sequana/__init__.py -> build/lib/sequana 2020-08-10T17:32:09,744 copying sequana/busco.py -> build/lib/sequana 2020-08-10T17:32:09,748 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2020-08-10T17:32:09,751 copying sequana/cpg_islands.py -> build/lib/sequana 2020-08-10T17:32:09,754 copying sequana/lazyimports.py -> build/lib/sequana 2020-08-10T17:32:09,758 copying sequana/tools.py -> build/lib/sequana 2020-08-10T17:32:09,762 copying sequana/isoseq.py -> build/lib/sequana 2020-08-10T17:32:09,766 copying sequana/datatools.py -> build/lib/sequana 2020-08-10T17:32:09,770 copying sequana/assembly.py -> build/lib/sequana 2020-08-10T17:32:09,773 copying sequana/taxonomy.py -> build/lib/sequana 2020-08-10T17:32:09,777 copying sequana/cigar.py -> build/lib/sequana 2020-08-10T17:32:09,781 copying sequana/contigs.py -> build/lib/sequana 2020-08-10T17:32:09,784 copying sequana/vcf_filter.py -> build/lib/sequana 2020-08-10T17:32:09,788 copying sequana/stats.py -> build/lib/sequana 2020-08-10T17:32:09,791 copying sequana/mixture.py -> build/lib/sequana 2020-08-10T17:32:09,794 copying sequana/databases.py -> build/lib/sequana 2020-08-10T17:32:09,798 copying sequana/itol.py -> build/lib/sequana 2020-08-10T17:32:09,801 copying sequana/bed.py -> build/lib/sequana 2020-08-10T17:32:09,804 copying sequana/demultiplex.py -> build/lib/sequana 2020-08-10T17:32:09,808 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2020-08-10T17:32:09,812 copying sequana/fasta.py -> build/lib/sequana 2020-08-10T17:32:09,816 copying sequana/enrichment.py -> build/lib/sequana 2020-08-10T17:32:09,821 copying sequana/summary.py -> build/lib/sequana 2020-08-10T17:32:09,824 copying sequana/lazy.py -> build/lib/sequana 2020-08-10T17:32:09,827 copying sequana/criteria.py -> build/lib/sequana 2020-08-10T17:32:09,830 copying sequana/expdesign.py -> build/lib/sequana 2020-08-10T17:32:09,834 copying sequana/vst.py -> build/lib/sequana 2020-08-10T17:32:09,837 copying sequana/krona.py -> build/lib/sequana 2020-08-10T17:32:09,840 copying sequana/sequence.py -> build/lib/sequana 2020-08-10T17:32:09,844 copying sequana/errors.py -> build/lib/sequana 2020-08-10T17:32:09,847 copying sequana/fastq.py -> build/lib/sequana 2020-08-10T17:32:09,852 copying sequana/pacbio.py -> build/lib/sequana 2020-08-10T17:32:09,983 copying sequana/featurecounts.py -> build/lib/sequana 2020-08-10T17:32:09,988 copying sequana/snpeff.py -> build/lib/sequana 2020-08-10T17:32:09,994 copying sequana/running_median.py -> build/lib/sequana 2020-08-10T17:32:09,999 copying sequana/gff3.py -> build/lib/sequana 2020-08-10T17:32:10,005 copying sequana/canu_scanner.py -> build/lib/sequana 2020-08-10T17:32:10,014 creating build/lib/sequana/multiqc 2020-08-10T17:32:10,016 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,020 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,024 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,028 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,031 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,034 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,037 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,042 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,047 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,052 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2020-08-10T17:32:10,059 creating build/lib/sequana/rules 2020-08-10T17:32:10,061 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2020-08-10T17:32:10,066 creating build/lib/sequana/modules_report 2020-08-10T17:32:10,067 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,071 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,074 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,077 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,080 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,085 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,089 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,092 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,095 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,097 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,102 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,106 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,112 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,116 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,122 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,125 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2020-08-10T17:32:10,129 creating build/lib/sequana/resources 2020-08-10T17:32:10,131 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2020-08-10T17:32:10,134 creating build/lib/sequana/pipelines 2020-08-10T17:32:10,135 copying sequana/pipelines/__init__.py -> build/lib/sequana/pipelines 2020-08-10T17:32:10,140 creating build/lib/sequana/scripts 2020-08-10T17:32:10,142 copying sequana/scripts/main.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,145 copying sequana/scripts/lane_merging.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,149 copying sequana/scripts/start_pipeline.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,152 copying sequana/scripts/gtf_fixer.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,155 copying sequana/scripts/fixR1R2.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,158 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,164 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,168 copying sequana/scripts/tools.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,173 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,179 copying sequana/scripts/browser.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,183 copying sequana/scripts/vcf_filter.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,187 copying sequana/scripts/summary.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,190 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,194 copying sequana/scripts/bam_splitter.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,198 copying sequana/scripts/mapping.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,203 copying sequana/scripts/compressor.py -> build/lib/sequana/scripts 2020-08-10T17:32:10,213 creating build/lib/sequana/gui 2020-08-10T17:32:10,215 copying sequana/gui/ui_snakemake.py -> build/lib/sequana/gui 2020-08-10T17:32:10,221 copying sequana/gui/snakemake.py -> build/lib/sequana/gui 2020-08-10T17:32:10,225 copying sequana/gui/ui_mainwindow.py -> build/lib/sequana/gui 2020-08-10T17:32:10,230 copying sequana/gui/ipython.py -> build/lib/sequana/gui 2020-08-10T17:32:10,233 copying sequana/gui/ui_help.py -> build/lib/sequana/gui 2020-08-10T17:32:10,236 copying sequana/gui/preferences.py -> build/lib/sequana/gui 2020-08-10T17:32:10,239 copying sequana/gui/widgets.py -> build/lib/sequana/gui 2020-08-10T17:32:10,242 copying sequana/gui/__init__.py -> build/lib/sequana/gui 2020-08-10T17:32:10,245 copying sequana/gui/messages.py -> build/lib/sequana/gui 2020-08-10T17:32:10,247 copying sequana/gui/tools.py -> build/lib/sequana/gui 2020-08-10T17:32:10,251 copying sequana/gui/browser.py -> build/lib/sequana/gui 2020-08-10T17:32:10,255 copying sequana/gui/about.py -> build/lib/sequana/gui 2020-08-10T17:32:10,257 copying sequana/gui/help.py -> build/lib/sequana/gui 2020-08-10T17:32:10,260 copying sequana/gui/sequana_gui.py -> build/lib/sequana/gui 2020-08-10T17:32:10,267 copying sequana/gui/ui_preferences.py -> build/lib/sequana/gui 2020-08-10T17:32:10,270 copying sequana/gui/file_browser.py -> build/lib/sequana/gui 2020-08-10T17:32:10,275 creating build/lib/sequana/utils 2020-08-10T17:32:10,276 copying sequana/utils/tree.py -> build/lib/sequana/utils 2020-08-10T17:32:10,280 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2020-08-10T17:32:10,283 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2020-08-10T17:32:10,286 copying sequana/utils/config.py -> build/lib/sequana/utils 2020-08-10T17:32:10,290 creating build/lib/sequana/plots 2020-08-10T17:32:10,291 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2020-08-10T17:32:10,295 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2020-08-10T17:32:10,298 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2020-08-10T17:32:10,302 creating build/lib/sequana/sphinxext 2020-08-10T17:32:10,303 copying sequana/sphinxext/snakemakerule.py -> build/lib/sequana/sphinxext 2020-08-10T17:32:10,307 copying sequana/sphinxext/sequana_pipeline.py -> build/lib/sequana/sphinxext 2020-08-10T17:32:10,310 copying sequana/sphinxext/__init__.py -> build/lib/sequana/sphinxext 2020-08-10T17:32:10,314 creating build/lib/sequana/viz 2020-08-10T17:32:10,316 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2020-08-10T17:32:10,320 copying sequana/viz/pca.py -> build/lib/sequana/viz 2020-08-10T17:32:10,323 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2020-08-10T17:32:10,327 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2020-08-10T17:32:10,330 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2020-08-10T17:32:10,334 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2020-08-10T17:32:10,336 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2020-08-10T17:32:10,340 copying sequana/viz/venn.py -> build/lib/sequana/viz 2020-08-10T17:32:10,344 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2020-08-10T17:32:10,349 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2020-08-10T17:32:10,354 copying sequana/viz/mds.py -> build/lib/sequana/viz 2020-08-10T17:32:10,359 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2020-08-10T17:32:10,364 copying sequana/viz/anova.py -> build/lib/sequana/viz 2020-08-10T17:32:10,367 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2020-08-10T17:32:10,370 copying sequana/viz/core.py -> build/lib/sequana/viz 2020-08-10T17:32:10,373 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2020-08-10T17:32:10,377 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2020-08-10T17:32:10,381 creating build/lib/sequana/rules/sambamba 2020-08-10T17:32:10,382 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2020-08-10T17:32:10,386 creating build/lib/sequana/rules/codecs 2020-08-10T17:32:10,387 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2020-08-10T17:32:10,391 creating build/lib/sequana/rules/Adapters 2020-08-10T17:32:10,392 copying sequana/rules/Adapters/__init__.py -> build/lib/sequana/rules/Adapters 2020-08-10T17:32:10,396 creating build/lib/sequana/rules/SnpEff 2020-08-10T17:32:10,397 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2020-08-10T17:32:10,400 creating build/lib/sequana/rules/Pacbio 2020-08-10T17:32:10,402 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2020-08-10T17:32:10,405 creating build/lib/sequana/rules/Variant_caller 2020-08-10T17:32:10,406 copying sequana/rules/Variant_caller/__init__.py -> build/lib/sequana/rules/Variant_caller 2020-08-10T17:32:10,410 creating build/lib/sequana/rules/deeptools 2020-08-10T17:32:10,411 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2020-08-10T17:32:10,415 creating build/lib/sequana/rules/picard-tools 2020-08-10T17:32:10,416 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2020-08-10T17:32:10,420 creating build/lib/sequana/rules/Assembly 2020-08-10T17:32:10,421 copying sequana/rules/Assembly/__init__.py -> build/lib/sequana/rules/Assembly 2020-08-10T17:32:10,424 creating build/lib/sequana/rules/Utils 2020-08-10T17:32:10,426 copying sequana/rules/Utils/__init__.py -> build/lib/sequana/rules/Utils 2020-08-10T17:32:10,430 creating build/lib/sequana/rules/Taxonomy 2020-08-10T17:32:10,431 copying sequana/rules/Taxonomy/__init__.py -> build/lib/sequana/rules/Taxonomy 2020-08-10T17:32:10,434 creating build/lib/sequana/rules/idr 2020-08-10T17:32:10,436 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2020-08-10T17:32:10,439 creating build/lib/sequana/resources/busco 2020-08-10T17:32:10,440 copying sequana/resources/busco/__init__.py -> build/lib/sequana/resources/busco 2020-08-10T17:32:10,444 creating build/lib/sequana/resources/images 2020-08-10T17:32:10,445 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2020-08-10T17:32:10,449 creating build/lib/sequana/resources/testing 2020-08-10T17:32:10,450 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2020-08-10T17:32:10,453 creating build/lib/sequana/resources/css 2020-08-10T17:32:10,455 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2020-08-10T17:32:10,458 creating build/lib/sequana/resources/templates 2020-08-10T17:32:10,459 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2020-08-10T17:32:10,463 creating build/lib/sequana/resources/js 2020-08-10T17:32:10,464 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2020-08-10T17:32:10,468 creating build/lib/sequana/resources/data 2020-08-10T17:32:10,469 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2020-08-10T17:32:10,473 creating build/lib/sequana/resources/canvas 2020-08-10T17:32:10,475 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2020-08-10T17:32:10,477 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2020-08-10T17:32:10,481 creating build/lib/sequana/resources/snpeff 2020-08-10T17:32:10,482 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2020-08-10T17:32:10,485 creating build/lib/sequana/resources/testing/rnadiff 2020-08-10T17:32:10,487 copying sequana/resources/testing/rnadiff/__init__.py -> build/lib/sequana/resources/testing/rnadiff 2020-08-10T17:32:10,490 creating build/lib/sequana/resources/data/adapters 2020-08-10T17:32:10,491 copying sequana/resources/data/adapters/__init__.py -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:11,001 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2020-08-10T17:32:11,005 copying sequana/rules/README.rst -> build/lib/sequana/rules 2020-08-10T17:32:11,008 creating build/lib/sequana/rules/rnaseqc2 2020-08-10T17:32:11,010 copying sequana/rules/rnaseqc2/rnaseqc2.rules -> build/lib/sequana/rules/rnaseqc2 2020-08-10T17:32:11,014 creating build/lib/sequana/rules/salmon_mapping 2020-08-10T17:32:11,015 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2020-08-10T17:32:11,019 creating build/lib/sequana/rules/bam_quality_filter 2020-08-10T17:32:11,020 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2020-08-10T17:32:11,026 creating build/lib/sequana/rules/format_contigs 2020-08-10T17:32:11,029 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2020-08-10T17:32:11,034 creating build/lib/sequana/rules/feature_counts 2020-08-10T17:32:11,037 copying sequana/rules/feature_counts/feature_counts.rules -> build/lib/sequana/rules/feature_counts 2020-08-10T17:32:11,043 creating build/lib/sequana/rules/star_index 2020-08-10T17:32:11,045 copying sequana/rules/star_index/star_index.rules -> build/lib/sequana/rules/star_index 2020-08-10T17:32:11,051 creating build/lib/sequana/rules/chipuanar 2020-08-10T17:32:11,053 copying sequana/rules/chipuanar/chipuanar.rules -> build/lib/sequana/rules/chipuanar 2020-08-10T17:32:11,059 creating build/lib/sequana/rules/star_mapping 2020-08-10T17:32:11,061 copying sequana/rules/star_mapping/star_mapping.rules -> build/lib/sequana/rules/star_mapping 2020-08-10T17:32:11,066 creating build/lib/sequana/rules/feature_counts_dynamic 2020-08-10T17:32:11,067 copying sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/lib/sequana/rules/feature_counts_dynamic 2020-08-10T17:32:11,071 creating build/lib/sequana/rules/bwa_mem_dynamic 2020-08-10T17:32:11,072 copying sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/lib/sequana/rules/bwa_mem_dynamic 2020-08-10T17:32:11,076 creating build/lib/sequana/rules/multiqc 2020-08-10T17:32:11,078 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2020-08-10T17:32:11,082 creating build/lib/sequana/rules/samtools_sort 2020-08-10T17:32:11,083 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2020-08-10T17:32:11,087 creating build/lib/sequana/rules/mapping_analysis 2020-08-10T17:32:11,088 copying sequana/rules/mapping_analysis/mapping_analysis.rules -> build/lib/sequana/rules/mapping_analysis 2020-08-10T17:32:11,093 creating build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-08-10T17:32:11,094 copying sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie2_mapping_dynamic 2020-08-10T17:32:11,099 creating build/lib/sequana/rules/copy_multiple_files 2020-08-10T17:32:11,100 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2020-08-10T17:32:11,105 creating build/lib/sequana/rules/indel_realigner 2020-08-10T17:32:11,107 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2020-08-10T17:32:11,114 creating build/lib/sequana/rules/remove_blacklist 2020-08-10T17:32:11,116 copying sequana/rules/remove_blacklist/remove_blacklist.rules -> build/lib/sequana/rules/remove_blacklist 2020-08-10T17:32:11,122 creating build/lib/sequana/rules/prokka 2020-08-10T17:32:11,124 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2020-08-10T17:32:11,128 creating build/lib/sequana/rules/salmon_index 2020-08-10T17:32:11,129 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2020-08-10T17:32:11,133 creating build/lib/sequana/rules/quast 2020-08-10T17:32:11,134 copying sequana/rules/quast/quast.rules -> build/lib/sequana/rules/quast 2020-08-10T17:32:11,138 creating build/lib/sequana/rules/sequana_coverage 2020-08-10T17:32:11,139 copying sequana/rules/sequana_coverage/sequana_coverage.rules -> build/lib/sequana/rules/sequana_coverage 2020-08-10T17:32:11,144 creating build/lib/sequana/rules/preSARTools 2020-08-10T17:32:11,145 copying sequana/rules/preSARTools/preSARTools.rules -> build/lib/sequana/rules/preSARTools 2020-08-10T17:32:11,149 creating build/lib/sequana/rules/DupRadar 2020-08-10T17:32:11,151 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2020-08-10T17:32:11,155 creating build/lib/sequana/rules/fastq_stats_dynamic 2020-08-10T17:32:11,157 copying sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/lib/sequana/rules/fastq_stats_dynamic 2020-08-10T17:32:11,160 creating build/lib/sequana/rules/bowtie2_index_dynamic 2020-08-10T17:32:11,162 copying sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/lib/sequana/rules/bowtie2_index_dynamic 2020-08-10T17:32:11,168 creating build/lib/sequana/rules/SARTools 2020-08-10T17:32:11,170 copying sequana/rules/SARTools/SARTools.rules -> build/lib/sequana/rules/SARTools 2020-08-10T17:32:11,177 creating build/lib/sequana/rules/spp 2020-08-10T17:32:11,179 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2020-08-10T17:32:11,185 creating build/lib/sequana/rules/igvtools 2020-08-10T17:32:11,186 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2020-08-10T17:32:11,190 creating build/lib/sequana/rules/digital_normalisation 2020-08-10T17:32:11,191 copying sequana/rules/digital_normalisation/digital_normalisation.rules -> build/lib/sequana/rules/digital_normalisation 2020-08-10T17:32:11,195 creating build/lib/sequana/rules/fastq_sampling 2020-08-10T17:32:11,196 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2020-08-10T17:32:11,200 creating build/lib/sequana/rules/spikes_counting 2020-08-10T17:32:11,202 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2020-08-10T17:32:11,206 creating build/lib/sequana/rules/tophat_mapping 2020-08-10T17:32:11,208 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2020-08-10T17:32:11,212 creating build/lib/sequana/rules/bam_analysis 2020-08-10T17:32:11,214 copying sequana/rules/bam_analysis/bam_analysis.rules -> build/lib/sequana/rules/bam_analysis 2020-08-10T17:32:11,217 creating build/lib/sequana/rules/multiqc2 2020-08-10T17:32:11,219 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2020-08-10T17:32:11,222 creating build/lib/sequana/rules/summary_pipeline 2020-08-10T17:32:11,224 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2020-08-10T17:32:11,229 creating build/lib/sequana/rules/bed_to_gff 2020-08-10T17:32:11,231 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2020-08-10T17:32:11,237 creating build/lib/sequana/rules/bowtie1_index_dynamic 2020-08-10T17:32:11,239 copying sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/lib/sequana/rules/bowtie1_index_dynamic 2020-08-10T17:32:11,245 creating build/lib/sequana/rules/extract_fasta_from_bed 2020-08-10T17:32:11,246 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2020-08-10T17:32:11,250 creating build/lib/sequana/rules/dag 2020-08-10T17:32:11,251 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2020-08-10T17:32:11,256 creating build/lib/sequana/rules/fastqc_dynamic 2020-08-10T17:32:11,257 copying sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/lib/sequana/rules/fastqc_dynamic 2020-08-10T17:32:11,261 creating build/lib/sequana/rules/miRNA_count_dynamic 2020-08-10T17:32:11,262 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2020-08-10T17:32:11,266 creating build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-08-10T17:32:11,268 copying sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/lib/sequana/rules/bowtie1_mapping_dynamic 2020-08-10T17:32:11,274 creating build/lib/sequana/rules/bwa_bam_to_fastq 2020-08-10T17:32:11,276 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2020-08-10T17:32:11,282 creating build/lib/sequana/rules/revcomp_rule 2020-08-10T17:32:11,284 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2020-08-10T17:32:11,288 creating build/lib/sequana/rules/samtools_depth 2020-08-10T17:32:11,290 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2020-08-10T17:32:11,294 creating build/lib/sequana/rules/conda 2020-08-10T17:32:11,295 copying sequana/rules/conda/conda.rules -> build/lib/sequana/rules/conda 2020-08-10T17:32:11,299 creating build/lib/sequana/rules/bwa_index 2020-08-10T17:32:11,301 copying sequana/rules/bwa_index/bwa_index.rules -> build/lib/sequana/rules/bwa_index 2020-08-10T17:32:11,304 creating build/lib/sequana/rules/rulegraph 2020-08-10T17:32:11,306 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2020-08-10T17:32:11,311 creating build/lib/sequana/rules/sambamba/sambamba_filter 2020-08-10T17:32:11,313 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2020-08-10T17:32:11,319 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2020-08-10T17:32:11,321 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2020-08-10T17:32:11,327 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2020-08-10T17:32:11,329 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2020-08-10T17:32:11,332 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2020-08-10T17:32:11,334 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2020-08-10T17:32:11,338 creating build/lib/sequana/rules/codecs/bam_to_fasta 2020-08-10T17:32:11,339 copying sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/lib/sequana/rules/codecs/bam_to_fasta 2020-08-10T17:32:11,344 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-08-10T17:32:11,345 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2020-08-10T17:32:11,350 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2020-08-10T17:32:11,352 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2020-08-10T17:32:11,358 creating build/lib/sequana/rules/codecs/gz_to_bz2 2020-08-10T17:32:11,360 copying sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/lib/sequana/rules/codecs/gz_to_bz2 2020-08-10T17:32:11,366 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-08-10T17:32:11,368 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2020-08-10T17:32:11,372 creating build/lib/sequana/rules/codecs/bz2_to_gz 2020-08-10T17:32:11,373 copying sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/lib/sequana/rules/codecs/bz2_to_gz 2020-08-10T17:32:11,377 creating build/lib/sequana/rules/codecs/gz_to_fastq 2020-08-10T17:32:11,378 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2020-08-10T17:32:11,382 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-08-10T17:32:11,383 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2020-08-10T17:32:11,388 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-08-10T17:32:11,390 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2020-08-10T17:32:11,396 creating build/lib/sequana/rules/codecs/fastq_to_gz 2020-08-10T17:32:11,398 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2020-08-10T17:32:11,404 creating build/lib/sequana/rules/codecs/dsrc_to_gz 2020-08-10T17:32:11,406 copying sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/lib/sequana/rules/codecs/dsrc_to_gz 2020-08-10T17:32:11,411 creating build/lib/sequana/rules/multiqc/2.0 2020-08-10T17:32:11,413 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2020-08-10T17:32:11,416 creating build/lib/sequana/rules/Adapters/cutadapt 2020-08-10T17:32:11,418 copying sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/lib/sequana/rules/Adapters/cutadapt 2020-08-10T17:32:11,422 creating build/lib/sequana/rules/Adapters/identify_adapters 2020-08-10T17:32:11,423 copying sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/lib/sequana/rules/Adapters/identify_adapters 2020-08-10T17:32:11,428 creating build/lib/sequana/rules/Adapters/alien_trimmer 2020-08-10T17:32:11,429 copying sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/lib/sequana/rules/Adapters/alien_trimmer 2020-08-10T17:32:11,435 creating build/lib/sequana/rules/Adapters/adapter_removal 2020-08-10T17:32:11,438 copying sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/lib/sequana/rules/Adapters/adapter_removal 2020-08-10T17:32:11,444 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-08-10T17:32:11,446 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2020-08-10T17:32:11,451 creating build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-08-10T17:32:11,452 copying sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/lib/sequana/rules/SnpEff/snpeff_dynamic 2020-08-10T17:32:11,456 creating build/lib/sequana/rules/Pacbio/pacbio_quality 2020-08-10T17:32:11,457 copying sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/Pacbio/pacbio_quality 2020-08-10T17:32:11,461 creating build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-08-10T17:32:11,462 copying sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-08-10T17:32:11,466 creating build/lib/sequana/rules/Variant_caller/freebayes 2020-08-10T17:32:11,468 copying sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/lib/sequana/rules/Variant_caller/freebayes 2020-08-10T17:32:11,472 creating build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-08-10T17:32:11,475 copying sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-08-10T17:32:11,481 creating build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-08-10T17:32:11,483 copying sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-08-10T17:32:11,489 creating build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-08-10T17:32:11,491 copying sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/lib/sequana/rules/Variant_caller/joint_freebayes 2020-08-10T17:32:11,495 creating build/lib/sequana/rules/deeptools/plotCorrelation 2020-08-10T17:32:11,496 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2020-08-10T17:32:11,500 creating build/lib/sequana/rules/deeptools/bamCoverage 2020-08-10T17:32:11,501 copying sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/deeptools/bamCoverage 2020-08-10T17:32:11,505 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-08-10T17:32:11,506 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2020-08-10T17:32:11,510 creating build/lib/sequana/rules/deeptools/plotCoverage 2020-08-10T17:32:11,512 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2020-08-10T17:32:11,519 creating build/lib/sequana/rules/deeptools/multiBamSummary 2020-08-10T17:32:11,521 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2020-08-10T17:32:11,527 creating build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-08-10T17:32:11,529 copying sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-08-10T17:32:11,534 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-08-10T17:32:11,535 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2020-08-10T17:32:11,539 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-08-10T17:32:11,540 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-08-10T17:32:11,544 creating build/lib/sequana/rules/picard-tools/reorderSam 2020-08-10T17:32:11,545 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2020-08-10T17:32:11,549 creating build/lib/sequana/rules/picard-tools/add_read_group 2020-08-10T17:32:11,550 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2020-08-10T17:32:11,556 creating build/lib/sequana/rules/peak_calling 2020-08-10T17:32:11,557 creating build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-08-10T17:32:11,560 copying sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/lib/sequana/rules/peak_calling/macs2_dynamic 2020-08-10T17:32:11,566 creating build/lib/sequana/rules/Assembly/spades 2020-08-10T17:32:11,568 copying sequana/rules/Assembly/spades/spades.rules -> build/lib/sequana/rules/Assembly/spades 2020-08-10T17:32:11,573 creating build/lib/sequana/rules/Assembly/busco 2020-08-10T17:32:11,575 copying sequana/rules/Assembly/busco/busco.rules -> build/lib/sequana/rules/Assembly/busco 2020-08-10T17:32:11,578 creating build/lib/sequana/rules/Assembly/busco_analysis 2020-08-10T17:32:11,580 copying sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/lib/sequana/rules/Assembly/busco_analysis 2020-08-10T17:32:11,584 creating build/lib/sequana/rules/Assembly/spades_get_fastq 2020-08-10T17:32:11,585 copying sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/Assembly/spades_get_fastq 2020-08-10T17:32:11,589 creating build/lib/sequana/rules/Assembly/canu 2020-08-10T17:32:11,590 copying sequana/rules/Assembly/canu/canu.rules -> build/lib/sequana/rules/Assembly/canu 2020-08-10T17:32:11,595 creating build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-08-10T17:32:11,597 copying sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-08-10T17:32:11,603 creating build/lib/sequana/rules/Utils/dynamic_unpigz 2020-08-10T17:32:11,605 copying sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/lib/sequana/rules/Utils/dynamic_unpigz 2020-08-10T17:32:11,612 creating build/lib/sequana/rules/Utils/dynamic_copy 2020-08-10T17:32:11,613 copying sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/lib/sequana/rules/Utils/dynamic_copy 2020-08-10T17:32:11,617 creating build/lib/sequana/rules/Taxonomy/fastq_screen 2020-08-10T17:32:11,618 copying sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen 2020-08-10T17:32:11,622 creating build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-08-10T17:32:11,624 copying sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/Taxonomy/fastq_screen_report 2020-08-10T17:32:11,627 creating build/lib/sequana/rules/idr/compute_idr 2020-08-10T17:32:11,629 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2020-08-10T17:32:11,633 creating build/lib/sequana/rules/idr/union_peaks 2020-08-10T17:32:11,635 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2020-08-10T17:32:11,641 creating build/lib/sequana/rules/idr/intersectionApproach 2020-08-10T17:32:11,643 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2020-08-10T17:32:11,648 creating build/lib/sequana/rules/idr/metrics_peaks 2020-08-10T17:32:11,651 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2020-08-10T17:32:11,656 creating build/lib/sequana/rules/idr/select_peaks 2020-08-10T17:32:11,657 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2020-08-10T17:32:11,661 creating build/lib/sequana/rules/idr/stats_peakCalling 2020-08-10T17:32:11,662 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2020-08-10T17:32:11,666 creating build/lib/sequana/rules/idr/preIDR_dynamic 2020-08-10T17:32:11,667 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2020-08-10T17:32:11,671 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-08-10T17:32:11,672 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-08-10T17:32:11,674 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-08-10T17:32:11,682 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-08-10T17:32:11,684 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-08-10T17:32:11,690 creating build/lib/sequana/rules/SnpEff/snpeff 2020-08-10T17:32:11,691 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-08-10T17:32:11,694 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2020-08-10T17:32:11,698 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-08-10T17:32:11,699 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2020-08-10T17:32:11,703 creating build/lib/sequana/rules/Taxonomy/kraken 2020-08-10T17:32:11,704 creating build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-08-10T17:32:11,706 copying sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.0 2020-08-10T17:32:11,709 creating build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-08-10T17:32:11,711 copying sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/lib/sequana/rules/Taxonomy/kraken/1.1 2020-08-10T17:32:11,715 creating build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,716 copying sequana/pipelines/compressor/README.rst -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,723 copying sequana/pipelines/compressor/schema.yaml -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,728 copying sequana/pipelines/compressor/compressor.rules -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,734 copying sequana/pipelines/compressor/dag.png -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,739 copying sequana/pipelines/compressor/cluster_config.json -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,742 copying sequana/pipelines/compressor/config.yaml -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,746 copying sequana/pipelines/compressor/requirements.txt -> build/lib/sequana/pipelines/compressor 2020-08-10T17:32:11,749 copying sequana/resources/busco/config.ini -> build/lib/sequana/resources/busco 2020-08-10T17:32:11,754 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2020-08-10T17:32:11,760 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2020-08-10T17:32:11,769 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2020-08-10T17:32:11,774 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,779 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,782 copying sequana/resources/testing/measles.fa -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,787 copying sequana/resources/testing/test_fasta_filtering.fa -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,790 copying sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,794 copying sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,797 copying sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,803 copying sequana/resources/testing/test_generic.rules -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,808 copying sequana/resources/testing/saccer3_truncated.gff -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,815 copying sequana/resources/testing/test_expdesign_hiseq.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,820 copying sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,824 copying sequana/resources/testing/test_expdesign_wrong.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,828 copying sequana/resources/testing/test_atropos_se.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,832 copying sequana/resources/testing/test_atropos_pe.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,836 copying sequana/resources/testing/test_itol_basic.tree.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,840 copying sequana/resources/testing/test_snakemake_stats.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,846 copying sequana/resources/testing/test_atropos_se.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,857 copying sequana/resources/testing/measles.fa.fai -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,861 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,864 copying sequana/resources/testing/summary_coverage1.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,868 copying sequana/resources/testing/test_contigs_spades.fasta -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,872 copying sequana/resources/testing/test_pacbio_subreads.bam -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,896 copying sequana/resources/testing/test_measles.cram -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,901 copying sequana/resources/testing/test_fastqc_report.zip -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,908 copying sequana/resources/testing/test_1_1000.fastq.gz -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,913 copying sequana/resources/testing/test_contigs_ex1.fasta -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,919 copying sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,922 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,926 copying sequana/resources/testing/summary_coverage2.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,929 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,933 copying sequana/resources/testing/test_adapter_removal_output.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,936 copying sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,940 copying sequana/resources/testing/summary_pacbio_qc2.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,944 copying sequana/resources/testing/test_busco_full_table.tsv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,948 copying sequana/resources/testing/test_sirv.xls -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,966 copying sequana/resources/testing/test_JB409847.bed -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,989 copying sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,992 copying sequana/resources/testing/summary_pacbio_qc3.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:11,996 copying sequana/resources/testing/test_cutadapt_paired.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,002 copying sequana/resources/testing/test_summary_fastq_stats.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,007 copying sequana/resources/testing/test_atropos_paired.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,015 copying sequana/resources/testing/test.fastq.gz -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,022 copying sequana/resources/testing/test_krona_k2.tsv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,025 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,029 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,033 copying sequana/resources/testing/test_measles.bam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,037 copying sequana/resources/testing/test_summary_module.svg -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,042 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,047 copying sequana/resources/testing/test_atropos_pe.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,058 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,062 copying sequana/resources/testing/test_pca.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,075 copying sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,081 copying sequana/resources/testing/test_kraken_multiple_2.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,085 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,104 copying sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,108 copying sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,112 copying sequana/resources/testing/test_generic.yaml -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,116 copying sequana/resources/testing/summary_pacbio_qc1.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,120 copying sequana/resources/testing/test_CS_tiny.bam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,125 copying sequana/resources/testing/test.fasta.fai -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,129 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,132 copying sequana/resources/testing/test_measles.sam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,137 copying sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,144 copying sequana/resources/testing/test_cnvnator.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,148 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,168 copying sequana/resources/testing/test_R2_.unmapped.fastq -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,171 copying sequana/resources/testing/test.vcf -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,176 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,179 copying sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,192 copying sequana/resources/testing/test_gui_generic_config.yaml -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,195 copying sequana/resources/testing/summary_kraken.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,199 copying sequana/resources/testing/test_krona_k1.tsv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,203 copying sequana/resources/testing/test_demultiplex_Stats.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,209 copying sequana/resources/testing/test_heatmap.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,213 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,216 copying sequana/resources/testing/summary_bamtools_stats.txt -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,220 copying sequana/resources/testing/test_R2_.mapped.fastq -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,227 copying sequana/resources/testing/test_pacbio_barcode_report.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,231 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,236 copying sequana/resources/testing/test.bam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,241 copying sequana/resources/testing/test_kraken.out -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,250 copying sequana/resources/testing/test.fastq -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,257 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,289 copying sequana/resources/testing/test_R1_.mapped.fastq -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,297 copying sequana/resources/testing/test.sam -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,305 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,309 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,312 copying sequana/resources/testing/test_fasta.fasta -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,316 copying sequana/resources/testing/summary_qc.json -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,320 copying sequana/resources/testing/test_gtf_fixer.gtf -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,323 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,327 copying sequana/resources/testing/test_kraken_multiple_1.csv -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,330 copying sequana/resources/testing/test_dag.dot -> build/lib/sequana/resources/testing 2020-08-10T17:32:12,334 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2020-08-10T17:32:12,338 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2020-08-10T17:32:12,341 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2020-08-10T17:32:12,345 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2020-08-10T17:32:12,351 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2020-08-10T17:32:12,360 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2020-08-10T17:32:12,364 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2020-08-10T17:32:12,367 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2020-08-10T17:32:12,371 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,375 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,383 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,429 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,434 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,445 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,461 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,476 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,482 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,491 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,496 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,500 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2020-08-10T17:32:12,504 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2020-08-10T17:32:12,507 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2020-08-10T17:32:12,511 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2020-08-10T17:32:12,516 copying sequana/resources/data/SIRV.fa -> build/lib/sequana/resources/data 2020-08-10T17:32:12,523 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2020-08-10T17:32:12,527 copying sequana/resources/data/test_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,535 copying sequana/resources/data/measles.fa.fai -> build/lib/sequana/resources/data 2020-08-10T17:32:12,539 copying sequana/resources/data/test_small.gff3 -> build/lib/sequana/resources/data 2020-08-10T17:32:12,542 copying sequana/resources/data/JB409847.bed -> build/lib/sequana/resources/data 2020-08-10T17:32:12,562 copying sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/lib/sequana/resources/data 2020-08-10T17:32:12,587 copying sequana/resources/data/phiX174.fa.sa -> build/lib/sequana/resources/data 2020-08-10T17:32:12,591 copying sequana/resources/data/JB409847.vcf -> build/lib/sequana/resources/data 2020-08-10T17:32:12,596 copying sequana/resources/data/test_wrong_bed.bed -> build/lib/sequana/resources/data 2020-08-10T17:32:12,600 copying sequana/resources/data/JB409847.gbk -> build/lib/sequana/resources/data 2020-08-10T17:32:12,605 copying sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,610 copying sequana/resources/data/JB409847.bcf -> build/lib/sequana/resources/data 2020-08-10T17:32:12,614 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2020-08-10T17:32:12,618 copying sequana/resources/data/phiX174.fa.ann -> build/lib/sequana/resources/data 2020-08-10T17:32:12,621 copying sequana/resources/data/phiX174.fa.bwt -> build/lib/sequana/resources/data 2020-08-10T17:32:12,626 copying sequana/resources/data/JB409847.filter.vcf -> build/lib/sequana/resources/data 2020-08-10T17:32:12,631 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2020-08-10T17:32:12,635 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,644 copying sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,855 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2020-08-10T17:32:12,859 copying sequana/resources/data/test_L002_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,869 copying sequana/resources/data/JB409847.expected.vcf -> build/lib/sequana/resources/data 2020-08-10T17:32:12,873 copying sequana/resources/data/phiX174.fa.amb -> build/lib/sequana/resources/data 2020-08-10T17:32:12,877 copying sequana/resources/data/test_hg38_chr18.bam -> build/lib/sequana/resources/data 2020-08-10T17:32:12,883 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2020-08-10T17:32:12,887 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:12,896 copying sequana/resources/data/measles.fa.sorted.bam -> build/lib/sequana/resources/data 2020-08-10T17:32:12,910 copying sequana/resources/data/hg38_chr18.bed -> build/lib/sequana/resources/data 2020-08-10T17:32:12,936 copying sequana/resources/data/JB409847.cov.csv -> build/lib/sequana/resources/data 2020-08-10T17:32:12,979 copying sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/lib/sequana/resources/data 2020-08-10T17:32:13,221 copying sequana/resources/data/phiX174.fa.pac -> build/lib/sequana/resources/data 2020-08-10T17:32:13,227 copying sequana/resources/data/JB409847.csv -> build/lib/sequana/resources/data 2020-08-10T17:32:13,233 copying sequana/resources/data/JB409847.fasta -> build/lib/sequana/resources/data 2020-08-10T17:32:13,240 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2020-08-10T17:32:13,259 copying sequana/resources/data/JB409847.vc.csv -> build/lib/sequana/resources/data 2020-08-10T17:32:13,264 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2020-08-10T17:32:13,269 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-08-10T17:32:13,270 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:13,273 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:14,080 copying sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:14,354 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-08-10T17:32:14,357 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-08-10T17:32:14,361 copying sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-08-10T17:32:14,415 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-08-10T17:32:14,416 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-08-10T17:32:14,418 copying sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-08-10T17:32:14,457 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-08-10T17:32:14,458 creating build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:14,460 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:14,466 copying sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:14,474 copying sequana/resources/data/adapters/README.rst -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,481 copying sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,488 copying sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,493 copying sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,497 copying sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,501 copying sequana/resources/data/adapters/adapters_Small_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,505 copying sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,509 copying sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,513 copying sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,517 copying sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,521 copying sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,525 copying sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,530 copying sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,534 copying sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,538 copying sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,542 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,546 copying sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,550 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,554 copying sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,558 copying sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,562 copying sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,566 copying sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,570 copying sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,575 copying sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,579 copying sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,583 copying sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,587 copying sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,591 copying sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,595 copying sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,599 copying sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,603 copying sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/lib/sequana/resources/data/adapters 2020-08-10T17:32:14,657 installing to build/bdist.linux-armv7l/wheel 2020-08-10T17:32:14,658 running install 2020-08-10T17:32:14,659 running install_lib 2020-08-10T17:32:14,665 creating build/bdist.linux-armv7l 2020-08-10T17:32:14,666 creating build/bdist.linux-armv7l/wheel 2020-08-10T17:32:14,670 creating build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,672 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,675 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,679 copying build/lib/sequana/kraken_builder.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,684 copying build/lib/sequana/adapters.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,688 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,693 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,695 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,698 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,702 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,706 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,710 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,715 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,720 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,726 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,731 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,735 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,738 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2020-08-10T17:32:14,742 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,745 copying build/lib/sequana/iotools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,748 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,753 copying build/lib/sequana/snaketools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,759 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,762 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,765 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:14,771 creating build/bdist.linux-armv7l/wheel/sequana/rules 2020-08-10T17:32:14,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 2020-08-10T17:32:14,777 copying build/lib/sequana/rules/rnaseqc2/rnaseqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc2 2020-08-10T17:32:14,784 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-08-10T17:32:14,788 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2020-08-10T17:32:14,794 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-08-10T17:32:14,798 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-08-10T17:32:14,800 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2020-08-10T17:32:14,805 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-08-10T17:32:14,807 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2020-08-10T17:32:14,812 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-08-10T17:32:14,814 copying build/lib/sequana/rules/feature_counts/feature_counts.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts 2020-08-10T17:32:14,819 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-08-10T17:32:14,821 copying build/lib/sequana/rules/star_index/star_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_index 2020-08-10T17:32:14,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-08-10T17:32:14,828 copying build/lib/sequana/rules/chipuanar/chipuanar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/chipuanar 2020-08-10T17:32:14,833 creating build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-08-10T17:32:14,835 copying build/lib/sequana/rules/star_mapping/star_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/star_mapping 2020-08-10T17:32:14,840 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-08-10T17:32:14,842 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2020-08-10T17:32:14,847 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-08-10T17:32:14,849 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2020-08-10T17:32:14,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-08-10T17:32:14,856 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2020-08-10T17:32:14,861 creating build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-08-10T17:32:14,863 copying build/lib/sequana/rules/feature_counts_dynamic/feature_counts_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/feature_counts_dynamic 2020-08-10T17:32:14,868 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-08-10T17:32:14,871 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-08-10T17:32:14,874 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2020-08-10T17:32:14,878 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-08-10T17:32:14,880 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2020-08-10T17:32:14,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-08-10T17:32:14,887 copying build/lib/sequana/rules/codecs/bam_to_fasta/bam_to_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bam_to_fasta 2020-08-10T17:32:14,891 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2020-08-10T17:32:14,895 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-08-10T17:32:14,897 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2020-08-10T17:32:14,902 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-08-10T17:32:14,904 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2020-08-10T17:32:14,909 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-08-10T17:32:14,911 copying build/lib/sequana/rules/codecs/gz_to_bz2/gz_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_bz2 2020-08-10T17:32:14,916 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-08-10T17:32:14,918 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2020-08-10T17:32:14,923 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-08-10T17:32:14,925 copying build/lib/sequana/rules/codecs/bz2_to_gz/bz2_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_gz 2020-08-10T17:32:14,930 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-08-10T17:32:14,932 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2020-08-10T17:32:14,937 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-08-10T17:32:14,939 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2020-08-10T17:32:14,944 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-08-10T17:32:14,946 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2020-08-10T17:32:14,950 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-08-10T17:32:14,953 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2020-08-10T17:32:14,958 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-08-10T17:32:14,960 copying build/lib/sequana/rules/codecs/dsrc_to_gz/dsrc_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_gz 2020-08-10T17:32:14,965 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-08-10T17:32:14,967 copying build/lib/sequana/rules/bwa_mem_dynamic/bwa_mem_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_mem_dynamic 2020-08-10T17:32:14,972 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-08-10T17:32:14,974 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2020-08-10T17:32:14,979 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-08-10T17:32:14,982 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2020-08-10T17:32:14,986 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-08-10T17:32:14,988 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2020-08-10T17:32:14,993 creating build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-08-10T17:32:14,995 copying build/lib/sequana/rules/mapping_analysis/mapping_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/mapping_analysis 2020-08-10T17:32:15,000 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-08-10T17:32:15,002 copying build/lib/sequana/rules/bowtie2_mapping_dynamic/bowtie2_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_mapping_dynamic 2020-08-10T17:32:15,007 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-08-10T17:32:15,010 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-08-10T17:32:15,012 copying build/lib/sequana/rules/Adapters/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/cutadapt 2020-08-10T17:32:15,017 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-08-10T17:32:15,020 copying build/lib/sequana/rules/Adapters/identify_adapters/identify_adapters.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/identify_adapters 2020-08-10T17:32:15,024 copying build/lib/sequana/rules/Adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters 2020-08-10T17:32:15,028 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-08-10T17:32:15,030 copying build/lib/sequana/rules/Adapters/alien_trimmer/alien_trimmer.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/alien_trimmer 2020-08-10T17:32:15,035 creating build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-08-10T17:32:15,037 copying build/lib/sequana/rules/Adapters/adapter_removal/adapter_removal.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Adapters/adapter_removal 2020-08-10T17:32:15,042 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-08-10T17:32:15,044 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2020-08-10T17:32:15,049 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-08-10T17:32:15,051 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2020-08-10T17:32:15,055 creating build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-08-10T17:32:15,058 copying build/lib/sequana/rules/remove_blacklist/remove_blacklist.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/remove_blacklist 2020-08-10T17:32:15,063 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-08-10T17:32:15,065 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2020-08-10T17:32:15,070 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-08-10T17:32:15,073 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2020-08-10T17:32:15,078 creating build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-08-10T17:32:15,081 copying build/lib/sequana/rules/quast/quast.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/quast 2020-08-10T17:32:15,085 creating build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-08-10T17:32:15,087 copying build/lib/sequana/rules/sequana_coverage/sequana_coverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sequana_coverage 2020-08-10T17:32:15,093 creating build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-08-10T17:32:15,095 copying build/lib/sequana/rules/preSARTools/preSARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/preSARTools 2020-08-10T17:32:15,100 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-08-10T17:32:15,102 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2020-08-10T17:32:15,106 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2020-08-10T17:32:15,110 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-08-10T17:32:15,112 copying build/lib/sequana/rules/fastq_stats_dynamic/fastq_stats_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_stats_dynamic 2020-08-10T17:32:15,117 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-08-10T17:32:15,119 copying build/lib/sequana/rules/bowtie2_index_dynamic/bowtie2_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie2_index_dynamic 2020-08-10T17:32:15,124 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-08-10T17:32:15,126 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2020-08-10T17:32:15,130 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-08-10T17:32:15,132 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2020-08-10T17:32:15,137 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-08-10T17:32:15,139 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2020-08-10T17:32:15,143 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2020-08-10T17:32:15,147 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-08-10T17:32:15,149 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2020-08-10T17:32:15,154 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2020-08-10T17:32:15,157 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-08-10T17:32:15,159 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2020-08-10T17:32:15,164 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-08-10T17:32:15,166 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2020-08-10T17:32:15,172 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-08-10T17:32:15,174 copying build/lib/sequana/rules/SnpEff/snpeff_dynamic/snpeff_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_dynamic 2020-08-10T17:32:15,179 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-08-10T17:32:15,182 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-08-10T17:32:15,184 copying build/lib/sequana/rules/Pacbio/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio/pacbio_quality 2020-08-10T17:32:15,188 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2020-08-10T17:32:15,193 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-08-10T17:32:15,195 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-08-10T17:32:15,198 copying build/lib/sequana/rules/Variant_caller/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_bcf_filter 2020-08-10T17:32:15,203 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-08-10T17:32:15,205 copying build/lib/sequana/rules/Variant_caller/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes 2020-08-10T17:32:15,209 copying build/lib/sequana/rules/Variant_caller/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller 2020-08-10T17:32:15,213 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-08-10T17:32:15,215 copying build/lib/sequana/rules/Variant_caller/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes_vcf_filter 2020-08-10T17:32:15,220 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-08-10T17:32:15,222 copying build/lib/sequana/rules/Variant_caller/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/freebayes_vcf_filter 2020-08-10T17:32:15,227 creating build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-08-10T17:32:15,229 copying build/lib/sequana/rules/Variant_caller/joint_freebayes/joint_freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Variant_caller/joint_freebayes 2020-08-10T17:32:15,234 creating build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-08-10T17:32:15,235 copying build/lib/sequana/rules/SARTools/SARTools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SARTools 2020-08-10T17:32:15,240 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-08-10T17:32:15,242 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2020-08-10T17:32:15,248 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-08-10T17:32:15,250 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2020-08-10T17:32:15,256 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-08-10T17:32:15,260 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-08-10T17:32:15,262 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2020-08-10T17:32:15,266 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-08-10T17:32:15,268 copying build/lib/sequana/rules/deeptools/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/bamCoverage 2020-08-10T17:32:15,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-08-10T17:32:15,273 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2020-08-10T17:32:15,276 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2020-08-10T17:32:15,280 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-08-10T17:32:15,281 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2020-08-10T17:32:15,285 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-08-10T17:32:15,286 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2020-08-10T17:32:15,291 creating build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-08-10T17:32:15,292 copying build/lib/sequana/rules/digital_normalisation/digital_normalisation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/digital_normalisation 2020-08-10T17:32:15,296 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-08-10T17:32:15,297 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2020-08-10T17:32:15,302 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-08-10T17:32:15,303 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2020-08-10T17:32:15,307 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-08-10T17:32:15,308 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2020-08-10T17:32:15,312 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-08-10T17:32:15,314 copying build/lib/sequana/rules/bam_analysis/bam_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_analysis 2020-08-10T17:32:15,318 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-08-10T17:32:15,319 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2020-08-10T17:32:15,323 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-08-10T17:32:15,325 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-08-10T17:32:15,327 copying build/lib/sequana/rules/picard-tools/mark_duplicates_dynamic/mark_duplicates_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates_dynamic 2020-08-10T17:32:15,331 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-08-10T17:32:15,332 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2020-08-10T17:32:15,336 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-08-10T17:32:15,338 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2020-08-10T17:32:15,341 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2020-08-10T17:32:15,344 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-08-10T17:32:15,346 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2020-08-10T17:32:15,350 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-08-10T17:32:15,351 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2020-08-10T17:32:15,355 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-08-10T17:32:15,357 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2020-08-10T17:32:15,361 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-08-10T17:32:15,362 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2020-08-10T17:32:15,367 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling 2020-08-10T17:32:15,369 creating build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-08-10T17:32:15,371 copying build/lib/sequana/rules/peak_calling/macs2_dynamic/macs2_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/peak_calling/macs2_dynamic 2020-08-10T17:32:15,375 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-08-10T17:32:15,377 copying build/lib/sequana/rules/bowtie1_index_dynamic/bowtie1_index_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_index_dynamic 2020-08-10T17:32:15,381 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-08-10T17:32:15,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-08-10T17:32:15,385 copying build/lib/sequana/rules/Assembly/spades/spades.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades 2020-08-10T17:32:15,389 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-08-10T17:32:15,390 copying build/lib/sequana/rules/Assembly/busco/busco.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco 2020-08-10T17:32:15,394 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-08-10T17:32:15,396 copying build/lib/sequana/rules/Assembly/busco_analysis/busco_analysis.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/busco_analysis 2020-08-10T17:32:15,400 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-08-10T17:32:15,402 copying build/lib/sequana/rules/Assembly/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/spades_get_fastq 2020-08-10T17:32:15,405 copying build/lib/sequana/rules/Assembly/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly 2020-08-10T17:32:15,408 creating build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-08-10T17:32:15,410 copying build/lib/sequana/rules/Assembly/canu/canu.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Assembly/canu 2020-08-10T17:32:15,414 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-08-10T17:32:15,415 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2020-08-10T17:32:15,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-08-10T17:32:15,421 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2020-08-10T17:32:15,425 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-08-10T17:32:15,427 copying build/lib/sequana/rules/fastqc_dynamic/fastqc_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc_dynamic 2020-08-10T17:32:15,431 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-08-10T17:32:15,432 copying build/lib/sequana/rules/Utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils 2020-08-10T17:32:15,436 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-08-10T17:32:15,437 copying build/lib/sequana/rules/Utils/dynamic_vcf_to_bcf/dynamic_vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_vcf_to_bcf 2020-08-10T17:32:15,441 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-08-10T17:32:15,443 copying build/lib/sequana/rules/Utils/dynamic_unpigz/dynamic_unpigz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_unpigz 2020-08-10T17:32:15,447 creating build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-08-10T17:32:15,448 copying build/lib/sequana/rules/Utils/dynamic_copy/dynamic_copy.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Utils/dynamic_copy 2020-08-10T17:32:15,452 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-08-10T17:32:15,453 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2020-08-10T17:32:15,457 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-08-10T17:32:15,460 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken 2020-08-10T17:32:15,462 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-08-10T17:32:15,464 copying build/lib/sequana/rules/Taxonomy/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.0 2020-08-10T17:32:15,468 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-08-10T17:32:15,469 copying build/lib/sequana/rules/Taxonomy/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/kraken/1.1 2020-08-10T17:32:15,473 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-08-10T17:32:15,475 copying build/lib/sequana/rules/Taxonomy/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen 2020-08-10T17:32:15,478 copying build/lib/sequana/rules/Taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy 2020-08-10T17:32:15,481 creating build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-08-10T17:32:15,483 copying build/lib/sequana/rules/Taxonomy/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/Taxonomy/fastq_screen_report 2020-08-10T17:32:15,487 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-08-10T17:32:15,489 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-08-10T17:32:15,491 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2020-08-10T17:32:15,494 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2020-08-10T17:32:15,497 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-08-10T17:32:15,499 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2020-08-10T17:32:15,503 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-08-10T17:32:15,504 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2020-08-10T17:32:15,508 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-08-10T17:32:15,509 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2020-08-10T17:32:15,514 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-08-10T17:32:15,515 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2020-08-10T17:32:15,519 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-08-10T17:32:15,520 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2020-08-10T17:32:15,525 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-08-10T17:32:15,526 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2020-08-10T17:32:15,531 creating build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-08-10T17:32:15,532 copying build/lib/sequana/rules/bowtie1_mapping_dynamic/bowtie1_mapping_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bowtie1_mapping_dynamic 2020-08-10T17:32:15,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-08-10T17:32:15,537 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2020-08-10T17:32:15,541 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-08-10T17:32:15,543 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2020-08-10T17:32:15,546 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-08-10T17:32:15,548 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2020-08-10T17:32:15,552 creating build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-08-10T17:32:15,553 copying build/lib/sequana/rules/conda/conda.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/conda 2020-08-10T17:32:15,557 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-08-10T17:32:15,558 copying build/lib/sequana/rules/bwa_index/bwa_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_index 2020-08-10T17:32:15,562 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-08-10T17:32:15,564 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2020-08-10T17:32:15,567 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,570 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,573 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,576 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,583 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,587 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,590 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,593 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,596 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,599 copying build/lib/sequana/kraken.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,605 copying build/lib/sequana/pipelines_common.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,610 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,614 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,619 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,622 copying build/lib/sequana/busco.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,626 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,629 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,633 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,636 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,641 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,643 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,646 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,650 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,654 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,657 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,662 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,666 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,669 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,672 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,675 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,678 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,681 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,685 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,688 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,692 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,696 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2020-08-10T17:32:15,699 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,704 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,707 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,710 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,715 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,718 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,722 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:15,727 creating build/bdist.linux-armv7l/wheel/sequana/resources 2020-08-10T17:32:15,729 creating build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-08-10T17:32:15,730 copying build/lib/sequana/resources/busco/config.ini -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-08-10T17:32:15,734 copying build/lib/sequana/resources/busco/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/busco 2020-08-10T17:32:15,737 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-08-10T17:32:15,739 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-08-10T17:32:15,742 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-08-10T17:32:15,745 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-08-10T17:32:15,750 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2020-08-10T17:32:15,757 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,758 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_noconfig.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,761 copying build/lib/sequana/resources/testing/saccer3_truncated.gff -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,765 copying build/lib/sequana/resources/testing/test_expdesign_hiseq.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,768 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,771 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,775 copying build/lib/sequana/resources/testing/test_expdesign_wrong.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,778 copying build/lib/sequana/resources/testing/test_atropos_se.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,782 copying build/lib/sequana/resources/testing/test_atropos_pe.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,785 copying build/lib/sequana/resources/testing/test_itol_basic.tree.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,788 copying build/lib/sequana/resources/testing/test_snakemake_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,792 copying build/lib/sequana/resources/testing/test_atropos_se.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,799 copying build/lib/sequana/resources/testing/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,802 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc25.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,805 copying build/lib/sequana/resources/testing/summary_coverage1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,808 copying build/lib/sequana/resources/testing/test_contigs_spades.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,812 copying build/lib/sequana/resources/testing/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,831 copying build/lib/sequana/resources/testing/test_measles.cram -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,835 copying build/lib/sequana/resources/testing/test_fastqc_report.zip -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,841 copying build/lib/sequana/resources/testing/test_1_1000.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,846 copying build/lib/sequana/resources/testing/test_contigs_ex1.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,851 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,854 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,857 copying build/lib/sequana/resources/testing/summary_coverage2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,860 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,863 copying build/lib/sequana/resources/testing/test_adapter_removal_output.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,866 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,869 copying build/lib/sequana/resources/testing/summary_pacbio_qc2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:15,874 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-08-10T17:32:15,876 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1 2020-08-10T17:32:15,878 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:15,880 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:16,672 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables/B0000-v1.normCounts.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_analysis_1/tables 2020-08-10T17:32:16,938 copying build/lib/sequana/resources/testing/rnadiff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff 2020-08-10T17:32:16,941 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1 2020-08-10T17:32:16,943 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-08-10T17:32:16,945 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables/B3789-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_1/tables 2020-08-10T17:32:16,995 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2 2020-08-10T17:32:16,997 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-08-10T17:32:16,999 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables/B0000-v1.surexpvsref.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_onecond_2/tables 2020-08-10T17:32:17,037 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions 2020-08-10T17:32:17,040 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:17,041 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsB.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:17,046 copying build/lib/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables/data.AvsC.complete.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing/rnadiff/rnadiff_fake_two_conditions/tables 2020-08-10T17:32:17,050 copying build/lib/sequana/resources/testing/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,054 copying build/lib/sequana/resources/testing/test_sirv.xls -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,069 copying build/lib/sequana/resources/testing/test_JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,089 copying build/lib/sequana/resources/testing/test_laa_amplicon_analysis_summary_bc24.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,092 copying build/lib/sequana/resources/testing/summary_pacbio_qc3.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,096 copying build/lib/sequana/resources/testing/test_cutadapt_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,100 copying build/lib/sequana/resources/testing/test_summary_fastq_stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,103 copying build/lib/sequana/resources/testing/test_atropos_paired.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,108 copying build/lib/sequana/resources/testing/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,112 copying build/lib/sequana/resources/testing/test_krona_k2.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,115 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,117 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,121 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,123 copying build/lib/sequana/resources/testing/test_measles.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,127 copying build/lib/sequana/resources/testing/test_summary_module.svg -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,131 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,135 copying build/lib/sequana/resources/testing/test_atropos_pe.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,146 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,149 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_configfile.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,152 copying build/lib/sequana/resources/testing/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,161 copying build/lib/sequana/resources/testing/test_kraken_mkr2_summary_2.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,165 copying build/lib/sequana/resources/testing/test_kraken_multiple_2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,168 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,187 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_doubleindex.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,193 copying build/lib/sequana/resources/testing/test_demultiplex_Stats_undetermined.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,196 copying build/lib/sequana/resources/testing/test_generic.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,199 copying build/lib/sequana/resources/testing/summary_pacbio_qc1.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,203 copying build/lib/sequana/resources/testing/test_CS_tiny.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,207 copying build/lib/sequana/resources/testing/test.fasta.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,211 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,214 copying build/lib/sequana/resources/testing/test_measles.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,219 copying build/lib/sequana/resources/testing/test_vcf_mpileup_4dot1.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,230 copying build/lib/sequana/resources/testing/test_cnvnator.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,234 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,255 copying build/lib/sequana/resources/testing/test_R2_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,258 copying build/lib/sequana/resources/testing/test.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,264 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,269 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,273 copying build/lib/sequana/resources/testing/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,279 copying build/lib/sequana/resources/testing/test_isoseq_lq_sirv.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,290 copying build/lib/sequana/resources/testing/test_gui_generic_snakefile_config.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,293 copying build/lib/sequana/resources/testing/test_gui_generic_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,296 copying build/lib/sequana/resources/testing/test_generic.rules -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,301 copying build/lib/sequana/resources/testing/summary_kraken.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,307 copying build/lib/sequana/resources/testing/test_krona_k1.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,312 copying build/lib/sequana/resources/testing/test_demultiplex_Stats.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,320 copying build/lib/sequana/resources/testing/test_heatmap.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,323 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,326 copying build/lib/sequana/resources/testing/summary_bamtools_stats.txt -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,329 copying build/lib/sequana/resources/testing/test_R2_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,336 copying build/lib/sequana/resources/testing/test_pacbio_barcode_report.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,341 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,347 copying build/lib/sequana/resources/testing/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,355 copying build/lib/sequana/resources/testing/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,365 copying build/lib/sequana/resources/testing/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,371 copying build/lib/sequana/resources/testing/test_fasta_filtering.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,374 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,409 copying build/lib/sequana/resources/testing/test_R1_.mapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,416 copying build/lib/sequana/resources/testing/test.sam -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,427 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,432 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,437 copying build/lib/sequana/resources/testing/test_fasta.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,442 copying build/lib/sequana/resources/testing/summary_qc.json -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,447 copying build/lib/sequana/resources/testing/test_gtf_fixer.gtf -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,450 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,453 copying build/lib/sequana/resources/testing/test_kraken_multiple_1.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,456 copying build/lib/sequana/resources/testing/test_dag.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2020-08-10T17:32:17,460 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,462 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,466 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,469 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,473 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,477 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,479 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2020-08-10T17:32:17,490 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-08-10T17:32:17,491 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-08-10T17:32:17,494 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-08-10T17:32:17,498 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-08-10T17:32:17,500 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2020-08-10T17:32:17,505 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2020-08-10T17:32:17,511 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,513 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,520 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,527 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,531 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,534 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,541 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,559 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,564 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,583 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,588 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,596 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,603 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,608 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2020-08-10T17:32:17,613 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,615 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,618 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,621 copying build/lib/sequana/resources/data/test_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,630 copying build/lib/sequana/resources/data/measles.fa.fai -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,633 copying build/lib/sequana/resources/data/test_small.gff3 -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,636 copying build/lib/sequana/resources/data/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,655 copying build/lib/sequana/resources/data/lima_output.lbc32--lbc32.ccs.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,680 copying build/lib/sequana/resources/data/phiX174.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,684 copying build/lib/sequana/resources/data/JB409847.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,689 copying build/lib/sequana/resources/data/test_wrong_bed.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,692 copying build/lib/sequana/resources/data/JB409847.gbk -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,699 copying build/lib/sequana/resources/data/KO_ATCACG_R1_test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,703 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,706 copying build/lib/sequana/resources/data/JB409847.bcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,710 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,713 copying build/lib/sequana/resources/data/phiX174.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,716 copying build/lib/sequana/resources/data/phiX174.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,719 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,722 copying build/lib/sequana/resources/data/JB409847.filter.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,726 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,729 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,738 copying build/lib/sequana/resources/data/WT_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,948 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,952 copying build/lib/sequana/resources/data/test_L002_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,960 copying build/lib/sequana/resources/data/JB409847.expected.vcf -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,964 copying build/lib/sequana/resources/data/phiX174.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,967 copying build/lib/sequana/resources/data/test_hg38_chr18.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,974 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,980 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,992 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:17,996 copying build/lib/sequana/resources/data/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,014 copying build/lib/sequana/resources/data/hg38_chr18.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,039 copying build/lib/sequana/resources/data/JB409847.cov.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,078 copying build/lib/sequana/resources/data/KO_ATCACG_L001_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,291 copying build/lib/sequana/resources/data/phiX174.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,294 copying build/lib/sequana/resources/data/JB409847.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,297 copying build/lib/sequana/resources/data/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,302 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,438 creating build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,439 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,445 copying build/lib/sequana/resources/data/adapters/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,451 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,455 copying build/lib/sequana/resources/data/adapters/adapters_Small_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,458 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,461 copying build/lib/sequana/resources/data/adapters/adapters_Small_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,465 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,468 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,471 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,474 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,477 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,480 copying build/lib/sequana/resources/data/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,483 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,486 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,490 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,493 copying build/lib/sequana/resources/data/adapters/adapters_SMARTer_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,496 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,499 copying build/lib/sequana/resources/data/adapters/NEXTFlex96_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,503 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,505 copying build/lib/sequana/resources/data/adapters/TruSeqCD_alt_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,509 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,512 copying build/lib/sequana/resources/data/adapters/TruSeqCD_DNA_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,515 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,518 copying build/lib/sequana/resources/data/adapters/NEXTFlex48_DNA_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,522 copying build/lib/sequana/resources/data/adapters/TruSeqUD_DNA_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,525 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,528 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,531 copying build/lib/sequana/resources/data/adapters/adapters_Small_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,537 copying build/lib/sequana/resources/data/adapters/adapters_TruSeq_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,542 copying build/lib/sequana/resources/data/adapters/adapters_NEBNext_revcomp.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,547 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_rev.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,553 copying build/lib/sequana/resources/data/adapters/adapters_Nextera_fwd.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data/adapters 2020-08-10T17:32:18,556 copying build/lib/sequana/resources/data/JB409847.vc.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,560 copying build/lib/sequana/resources/data/SIRV.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2020-08-10T17:32:18,567 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-08-10T17:32:18,568 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-08-10T17:32:18,571 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2020-08-10T17:32:18,575 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-08-10T17:32:18,576 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-08-10T17:32:18,579 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2020-08-10T17:32:18,583 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,587 creating build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-08-10T17:32:18,590 creating build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,591 copying build/lib/sequana/pipelines/compressor/README.rst -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,595 copying build/lib/sequana/pipelines/compressor/schema.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,598 copying build/lib/sequana/pipelines/compressor/compressor.rules -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,603 copying build/lib/sequana/pipelines/compressor/dag.png -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,606 copying build/lib/sequana/pipelines/compressor/cluster_config.json -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,609 copying build/lib/sequana/pipelines/compressor/config.yaml -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,613 copying build/lib/sequana/pipelines/compressor/requirements.txt -> build/bdist.linux-armv7l/wheel/sequana/pipelines/compressor 2020-08-10T17:32:18,617 copying build/lib/sequana/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/pipelines 2020-08-10T17:32:18,621 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,628 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,631 copying build/lib/sequana/scripts/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,636 copying build/lib/sequana/scripts/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,640 copying build/lib/sequana/scripts/start_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,643 copying build/lib/sequana/scripts/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,646 copying build/lib/sequana/scripts/fixR1R2.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,649 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,653 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,655 copying build/lib/sequana/scripts/tools.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,658 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,662 copying build/lib/sequana/scripts/browser.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,665 copying build/lib/sequana/scripts/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,668 copying build/lib/sequana/scripts/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,672 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,676 copying build/lib/sequana/scripts/bam_splitter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,679 copying build/lib/sequana/scripts/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,683 copying build/lib/sequana/scripts/compressor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2020-08-10T17:32:18,687 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,691 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,694 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,697 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,701 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,706 creating build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,708 copying build/lib/sequana/gui/ui_snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,712 copying build/lib/sequana/gui/snakemake.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,716 copying build/lib/sequana/gui/ui_mainwindow.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,722 copying build/lib/sequana/gui/ipython.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,725 copying build/lib/sequana/gui/ui_help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,728 copying build/lib/sequana/gui/preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,731 copying build/lib/sequana/gui/widgets.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,734 copying build/lib/sequana/gui/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,737 copying build/lib/sequana/gui/messages.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,740 copying build/lib/sequana/gui/tools.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,743 copying build/lib/sequana/gui/browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,747 copying build/lib/sequana/gui/about.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,750 copying build/lib/sequana/gui/help.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,753 copying build/lib/sequana/gui/sequana_gui.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,761 copying build/lib/sequana/gui/ui_preferences.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,767 copying build/lib/sequana/gui/file_browser.py -> build/bdist.linux-armv7l/wheel/sequana/gui 2020-08-10T17:32:18,774 creating build/bdist.linux-armv7l/wheel/sequana/utils 2020-08-10T17:32:18,776 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-08-10T17:32:18,780 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-08-10T17:32:18,783 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-08-10T17:32:18,787 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2020-08-10T17:32:18,790 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,793 copying build/lib/sequana/enrichment.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,798 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,802 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,805 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,809 copying build/lib/sequana/expdesign.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,813 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,816 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,821 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,829 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,835 creating build/bdist.linux-armv7l/wheel/sequana/plots 2020-08-10T17:32:18,837 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-08-10T17:32:18,841 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-08-10T17:32:18,845 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2020-08-10T17:32:18,847 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,853 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,858 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,863 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,867 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,872 creating build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-08-10T17:32:18,875 copying build/lib/sequana/sphinxext/snakemakerule.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-08-10T17:32:18,879 copying build/lib/sequana/sphinxext/sequana_pipeline.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-08-10T17:32:18,883 copying build/lib/sequana/sphinxext/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/sphinxext 2020-08-10T17:32:18,887 creating build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,890 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,895 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,899 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,904 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,908 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,912 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,916 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,920 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,924 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,928 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,932 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,936 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,940 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,944 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,948 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,951 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,956 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2020-08-10T17:32:18,960 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,964 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2020-08-10T17:32:18,968 running install_egg_info 2020-08-10T17:32:19,005 running egg_info 2020-08-10T17:32:19,006 writing sequana.egg-info/PKG-INFO 2020-08-10T17:32:19,013 writing entry points to sequana.egg-info/entry_points.txt 2020-08-10T17:32:19,016 writing top-level names to sequana.egg-info/top_level.txt 2020-08-10T17:32:19,019 writing requirements to sequana.egg-info/requires.txt 2020-08-10T17:32:19,021 writing dependency_links to sequana.egg-info/dependency_links.txt 2020-08-10T17:32:19,203 reading manifest file 'sequana.egg-info/SOURCES.txt' 2020-08-10T17:32:19,233 reading manifest template 'MANIFEST.in' 2020-08-10T17:32:19,242 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-08-10T17:32:19,250 warning: no previously-included files matching '*pyc' found under directory '*' 2020-08-10T17:32:20,690 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2020-08-10T17:32:20,696 warning: no previously-included files matching '*' found under directory 'test' 2020-08-10T17:32:20,702 warning: no previously-included files found matching 'sequana/rm2.py' 2020-08-10T17:32:20,784 writing manifest file 'sequana.egg-info/SOURCES.txt' 2020-08-10T17:32:20,788 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.9.1-py3.5.egg-info 2020-08-10T17:32:20,813 running install_scripts 2020-08-10T17:32:21,076 creating build/bdist.linux-armv7l/wheel/sequana-0.9.1.dist-info/WHEEL 2020-08-10T17:32:35,517 Building wheel for sequana (setup.py): finished with status 'done' 2020-08-10T17:32:35,825 Created wheel for sequana: filename=sequana-0.9.1-py3-none-any.whl size=21219426 sha256=f2c12f5f57a1dac2672b6c19565b8f75c1815dcb3cb71fe457ef808b59b70f3f 2020-08-10T17:32:35,826 Stored in directory: /tmp/pip-ephem-wheel-cache-hiqnd1n3/wheels/9c/c5/1e/e8e6a790bfe41fd0330dff3aeb2e6fceda34684f373f61de2b 2020-08-10T17:32:35,829 Successfully built sequana 2020-08-10T17:32:42,056 Removed build tracker: '/tmp/pip-req-tracker-mjyficzf'