2020-08-11T09:21:50,479 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ap8qio4
2020-08-11T09:21:50,485 Created temporary directory: /tmp/pip-req-tracker-_r62wxej
2020-08-11T09:21:50,486 Initialized build tracking at /tmp/pip-req-tracker-_r62wxej
2020-08-11T09:21:50,487 Created build tracker: /tmp/pip-req-tracker-_r62wxej
2020-08-11T09:21:50,487 Entered build tracker: /tmp/pip-req-tracker-_r62wxej
2020-08-11T09:21:50,489 Created temporary directory: /tmp/pip-wheel-yatxoywp
2020-08-11T09:21:50,508 1 location(s) to search for versions of mgatk:
2020-08-11T09:21:50,508 * https://pypi.org/simple/mgatk/
2020-08-11T09:21:50,509 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2020-08-11T09:21:50,511 Getting page https://pypi.org/simple/mgatk/
2020-08-11T09:21:50,516 Found index url https://pypi.org/simple
2020-08-11T09:21:50,842   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2020-08-11T09:21:50,843   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2020-08-11T09:21:50,844   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2020-08-11T09:21:50,845   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2020-08-11T09:21:50,846   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2020-08-11T09:21:50,847   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2020-08-11T09:21:50,848   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2020-08-11T09:21:50,849   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2020-08-11T09:21:50,849   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2020-08-11T09:21:50,850   Found link https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 (from https://pypi.org/simple/mgatk/), version: 0.5.8
2020-08-11T09:21:50,864 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2020-08-11T09:21:50,865 Using version 0.5.8 (newest of versions: 0.5.8)
2020-08-11T09:21:50,874 Collecting mgatk==0.5.8
2020-08-11T09:21:50,879   Created temporary directory: /tmp/pip-unpack-j5jmtemx
2020-08-11T09:21:51,304   Downloading mgatk-0.5.8.tar.gz (14.3 MB)
2020-08-11T09:21:57,052   Added mgatk==0.5.8 from https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 to build tracker '/tmp/pip-req-tracker-_r62wxej'
2020-08-11T09:21:57,054     Running setup.py (path:/tmp/pip-wheel-yatxoywp/mgatk/setup.py) egg_info for package mgatk
2020-08-11T09:21:57,056     Created temporary directory: /tmp/pip-pip-egg-info-co5ewqw4
2020-08-11T09:21:57,057     Running command python setup.py egg_info
2020-08-11T09:21:59,225     running egg_info
2020-08-11T09:21:59,232     creating /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info
2020-08-11T09:21:59,236     writing /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/PKG-INFO
2020-08-11T09:21:59,241     writing dependency_links to /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/dependency_links.txt
2020-08-11T09:21:59,244     writing requirements to /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/requires.txt
2020-08-11T09:21:59,246     writing entry points to /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/entry_points.txt
2020-08-11T09:21:59,248     writing top-level names to /tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/top_level.txt
2020-08-11T09:21:59,253     writing manifest file '/tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/SOURCES.txt'
2020-08-11T09:21:59,610     reading manifest file '/tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/SOURCES.txt'
2020-08-11T09:21:59,614     reading manifest template 'MANIFEST.in'
2020-08-11T09:21:59,616     no previously-included directories found matching 'mgatk.egg-info/'
2020-08-11T09:21:59,617     no previously-included directories found matching 'tests/'
2020-08-11T09:21:59,618     no previously-included directories found matching '*.DS_Store'
2020-08-11T09:21:59,716     writing manifest file '/tmp/pip-pip-egg-info-co5ewqw4/mgatk.egg-info/SOURCES.txt'
2020-08-11T09:21:59,854   Source in /tmp/pip-wheel-yatxoywp/mgatk has version 0.5.8, which satisfies requirement mgatk==0.5.8 from https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67
2020-08-11T09:21:59,856   Removed mgatk==0.5.8 from https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 from build tracker '/tmp/pip-req-tracker-_r62wxej'
2020-08-11T09:21:59,859 Building wheels for collected packages: mgatk
2020-08-11T09:21:59,869   Created temporary directory: /tmp/pip-wheel-7s2nqt7k
2020-08-11T09:21:59,870   Building wheel for mgatk (setup.py): started
2020-08-11T09:21:59,871   Destination directory: /tmp/pip-wheel-7s2nqt7k
2020-08-11T09:21:59,871   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-yatxoywp/mgatk/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-yatxoywp/mgatk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7s2nqt7k
2020-08-11T09:22:02,099   running bdist_wheel
2020-08-11T09:22:02,116   running build
2020-08-11T09:22:02,117   running build_py
2020-08-11T09:22:02,455   creating build
2020-08-11T09:22:02,456   creating build/lib
2020-08-11T09:22:02,458   creating build/lib/mgatk
2020-08-11T09:22:02,460   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2020-08-11T09:22:02,466   copying mgatk/cli.py -> build/lib/mgatk
2020-08-11T09:22:02,472   copying mgatk/__init__.py -> build/lib/mgatk
2020-08-11T09:22:02,476   running egg_info
2020-08-11T09:22:02,511   writing dependency_links to mgatk.egg-info/dependency_links.txt
2020-08-11T09:22:02,513   writing entry points to mgatk.egg-info/entry_points.txt
2020-08-11T09:22:02,515   writing requirements to mgatk.egg-info/requires.txt
2020-08-11T09:22:02,518   writing mgatk.egg-info/PKG-INFO
2020-08-11T09:22:02,523   writing top-level names to mgatk.egg-info/top_level.txt
2020-08-11T09:22:02,533   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-11T09:22:02,539   reading manifest template 'MANIFEST.in'
2020-08-11T09:22:02,542   no previously-included directories found matching 'tests/'
2020-08-11T09:22:02,543   no previously-included directories found matching '*.DS_Store'
2020-08-11T09:22:02,630   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-11T09:22:02,645   copying mgatk/.DS_Store -> build/lib/mgatk
2020-08-11T09:22:02,652   copying mgatk/devnotes.md -> build/lib/mgatk
2020-08-11T09:22:02,657   creating build/lib/mgatk/__pycache__
2020-08-11T09:22:02,659   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,664   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,670   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,679   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,687   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,695   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-11T09:22:02,703   creating build/lib/mgatk/bin
2020-08-11T09:22:02,706   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2020-08-11T09:22:02,714   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2020-08-11T09:22:04,139   creating build/lib/mgatk/bin/R
2020-08-11T09:22:04,141   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2020-08-11T09:22:04,148   creating build/lib/mgatk/bin/anno
2020-08-11T09:22:04,150   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2020-08-11T09:22:04,157   creating build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,160   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,169   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,178   copying mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,184   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,193   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,202   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,211   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,220   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,229   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,237   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,246   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,255   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-11T09:22:04,264   creating build/lib/mgatk/bin/python
2020-08-11T09:22:04,266   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,274   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,281   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,289   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,296   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,302   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,310   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2020-08-11T09:22:04,317   creating build/lib/mgatk/bin/snake
2020-08-11T09:22:04,320   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2020-08-11T09:22:04,327   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2020-08-11T09:22:04,334   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2020-08-11T09:22:04,341   creating build/lib/mgatk/del
2020-08-11T09:22:04,344   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2020-08-11T09:22:04,352   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2020-08-11T09:22:04,360   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2020-08-11T09:22:04,367   creating build/lib/mgatk/del/__pycache__
2020-08-11T09:22:04,370   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-11T09:22:04,379   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-11T09:22:04,386   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2020-08-11T09:22:04,393   creating build/lib/mgatk/del/bulk_del
2020-08-11T09:22:04,395   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2020-08-11T09:22:04,402   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2020-08-11T09:22:04,407   creating build/lib/mgatk/del/singles_del
2020-08-11T09:22:04,409   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2020-08-11T09:22:04,415   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2020-08-11T09:22:04,422   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2020-08-11T09:22:04,442   installing to build/bdist.linux-armv7l/wheel
2020-08-11T09:22:04,443   running install
2020-08-11T09:22:04,445   running install_lib
2020-08-11T09:22:04,453   creating build/bdist.linux-armv7l
2020-08-11T09:22:04,454   creating build/bdist.linux-armv7l/wheel
2020-08-11T09:22:04,459   creating build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,462   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,470   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,472   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,477   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,483   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,491   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,497   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,502   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-11T09:22:04,509   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,516   creating build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-11T09:22:04,519   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-11T09:22:04,521   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-11T09:22:04,527   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-11T09:22:04,534   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-11T09:22:04,540   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-11T09:22:04,549   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-11T09:22:04,551   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-11T09:22:04,558   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-11T09:22:04,565   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-11T09:22:04,570   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-11T09:22:04,576   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-11T09:22:04,578   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-11T09:22:04,583   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-11T09:22:04,588   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-11T09:22:04,594   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,602   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,607   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-11T09:22:04,613   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-11T09:22:04,616   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-11T09:22:04,619   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-11T09:22:04,627   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,630   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,640   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,647   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,654   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,660   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,667   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,673   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,680   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,688   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,696   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,704   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,712   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-11T09:22:04,720   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-11T09:22:06,157   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-11T09:22:06,159   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-11T09:22:06,165   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-11T09:22:06,172   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,174   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,180   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,187   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,193   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,198   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,203   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,208   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-11T09:22:06,213   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-11T09:22:06,215   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-11T09:22:06,222   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-11T09:22:06,228   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-11T09:22:06,234   running install_egg_info
2020-08-11T09:22:06,254   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.5.8-py3.5.egg-info
2020-08-11T09:22:06,296   running install_scripts
2020-08-11T09:22:06,502   creating build/bdist.linux-armv7l/wheel/mgatk-0.5.8.dist-info/WHEEL
2020-08-11T09:22:11,420   Building wheel for mgatk (setup.py): finished with status 'done'
2020-08-11T09:22:11,658   Created wheel for mgatk: filename=mgatk-0.5.8-py2.py3-none-any.whl size=14336993 sha256=6e2875d8620ce7ed459c23ad983c0413adef335eabc99b82aedd074c181592d0
2020-08-11T09:22:11,659   Stored in directory: /tmp/pip-ephem-wheel-cache-4ap8qio4/wheels/08/29/40/8d4e282a01e09c9716be38aee47f1e4b3f535e7dfe6a94aaaf
2020-08-11T09:22:11,664 Successfully built mgatk
2020-08-11T09:22:14,149 Removed build tracker: '/tmp/pip-req-tracker-_r62wxej'