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https://files.pythonhosted.org/packages/06/c0/00269d20ad1b00fa6d668da19f930fe2e438f0325a4475ec6476fb1217e6/cidc_schemas-0.16.10.tar.gz#sha256=eb599a46db28efbfa4463e1985f0161d7c24994d7b6b86c073b3f4959cfbb5d6 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.10 2020-08-14T15:10:34,775 Found link https://files.pythonhosted.org/packages/2b/76/0ad05a9a2655d88e6162b59ebc267fd394cf67ba459d15748d58f375df79/cidc_schemas-0.16.11.tar.gz#sha256=215e0e38f0f5097db00ef6628d2c2ec252bf15f8dd5a836f65605aa7958e78a4 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.11 2020-08-14T15:10:34,777 Found link https://files.pythonhosted.org/packages/24/5a/764d5060591c2d70af2b8a06727c531f2e583524de0089ba302a315f576c/cidc_schemas-0.16.12.tar.gz#sha256=3d2e1d7f66179f5b175ad67a6236d482453486775642d059ad12a394b7b71933 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.12 2020-08-14T15:10:34,778 Found link 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https://files.pythonhosted.org/packages/c5/c3/29f97af9e21cf5a7986ec1ac7351ccbb0dc363b6a077ff5f276adda82d9f/cidc_schemas-0.16.16.tar.gz#sha256=55d33ecd567f0ce1d85152822cf517cc368f4180db6d69a8f2e7f94d3048cf5c (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.16 2020-08-14T15:10:34,783 Found link https://files.pythonhosted.org/packages/49/1f/e0c588c4e6d955489d751d916cf02e9472a5a4ea588bb9677b7ed90b41b2/cidc_schemas-0.16.17.tar.gz#sha256=5796f9763e67292969c30cf7e2a1da064935a81ff3f349d0f87ac27fba4f9189 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.17 2020-08-14T15:10:34,784 Found link https://files.pythonhosted.org/packages/68/74/94de835ee954fe2d973f2198cf5fcdc7fbfacb2dc88096113ccbaa873fcd/cidc_schemas-0.16.18.tar.gz#sha256=601e485f42f2f673e4e93cfa4ffebaad3be1072fcebc0417c72f2f366ad31cbc (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.18 2020-08-14T15:10:34,785 Found link 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https://files.pythonhosted.org/packages/97/a3/4eeb20f658cef4119cdeb8ac3628dd1dacc7ae904e8b60f5a0c9e6757dcf/cidc_schemas-0.16.25.tar.gz#sha256=039e1cf88e81b6fceaa020a60d2e25524d9f2e9e720151b46fe854a2d39f3ece (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.25 2020-08-14T15:10:34,794 Found link https://files.pythonhosted.org/packages/c8/3b/543e2cda51f7e8484977d139789860f5cd5a541a81be05f807ddba406e23/cidc_schemas-0.16.26.tar.gz#sha256=50dc83676a81e7e8e10ba2577e8ef28563a4ca5fb5692a3851ee32b9d4a7da4f (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.16.26 2020-08-14T15:10:34,795 Found link https://files.pythonhosted.org/packages/83/9a/6c2eb4ea970c1b955d0dd4930321a9e047876edd4c4a0fed1aa099226856/cidc_schemas-0.17.0.tar.gz#sha256=f778e0afe9f564371b349dc6860d840a417e26d5d5f8253eba5ce426a11e16b9 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.17.0 2020-08-14T15:10:34,797 Found link https://files.pythonhosted.org/packages/25/cb/6d1bdf982b522320e40ee9acd9b7d5936c7170bc912b80d67af07a221af6/cidc_schemas-0.17.1.tar.gz#sha256=8654d78edaaf5df9ea422ea24f0bcf5fceb610dbad9e74d693d42ba3127e8a4f (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.17.1 2020-08-14T15:10:34,798 Found link https://files.pythonhosted.org/packages/68/1a/69110e18214299f861ddf63a2f96b1f317cb85044c99a0c058b1286cf311/cidc_schemas-0.17.2.tar.gz#sha256=7f2dfbd8a2c7019dc3c46646e77731f54b30dd9aef7fbe0441184ee58701988c (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.17.2 2020-08-14T15:10:34,799 Found link https://files.pythonhosted.org/packages/bd/55/e5a35175c2e3ea282bc9a17fd3cbf6ccdea4e1afe9d7f6484d2a97016b2d/cidc_schemas-0.17.3.tar.gz#sha256=40c76c68326c3ba814666607524352d398a2b797dd22d38fdd98e0408beae87a (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.17.3 2020-08-14T15:10:34,800 Found link https://files.pythonhosted.org/packages/60/12/4c72ce9c6b2f56a53896f191e5f22a3aff1f46f314adef0bb13374cc172f/cidc_schemas-0.18.0.tar.gz#sha256=0f1edb3d66c11439dd48d408e7ca4764c2dcc069af7214ca24b319990002e319 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.0 2020-08-14T15:10:34,802 Found link https://files.pythonhosted.org/packages/54/65/b73a93d531cdb0241488bfbac4a888f338de0bd4c22dfd3beb36f68fc447/cidc_schemas-0.18.1.tar.gz#sha256=f7c4dfedcf49ed39d88f8617653a4dc51651397c765dfc52f7c23b6adcfd905b (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.1 2020-08-14T15:10:34,803 Found link https://files.pythonhosted.org/packages/0e/86/3948ff7efbb3800047b1dda49596123038e83de235635236600d5b21e201/cidc_schemas-0.18.2.tar.gz#sha256=fb9229326020f1a4efe45ed997a13494bffce69e58cebcc3ec4acc08e889722c (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.2 2020-08-14T15:10:34,804 Found link https://files.pythonhosted.org/packages/42/e5/a19ac26c80aa9685cafaff8fe1c1768ff99ca947eb7468f72ec8d7cf2fa8/cidc_schemas-0.18.3.tar.gz#sha256=a826cb70026c3e210a004a2436ec4a651b1283e4c8bbbfa20160af469a863201 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.3 2020-08-14T15:10:34,805 Found link https://files.pythonhosted.org/packages/89/30/1b9406c099f9b557a8591ff26b2b06676e7d592bb5693d4b0c339c562262/cidc_schemas-0.18.4.tar.gz#sha256=4676e158d4dd0a1106dcfb21015c7741e0f5aa8dd4cc8263e77eb609a35c3f81 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.4 2020-08-14T15:10:34,807 Found link https://files.pythonhosted.org/packages/3f/59/9c977e5b892212aaf2581147c2566f4d1b5183232dc7213acd078579cedb/cidc_schemas-0.18.5.tar.gz#sha256=2f55c306ef7366cb7d71fb2323ca77b8e371c75815fc0514890aafdb6314e482 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.5 2020-08-14T15:10:34,808 Found link https://files.pythonhosted.org/packages/fc/46/2f52863b919f42e2f20fb3ae0148cb1d9bb293cb96adf4701be969c3a986/cidc_schemas-0.18.6.tar.gz#sha256=e7d1cf99c1de79fe49c2901e1f34fde586b4dc10f51907bcf9d6a0c5d0bfeba3 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.6 2020-08-14T15:10:34,809 Found link https://files.pythonhosted.org/packages/70/ea/13d2a3e51c94fb9cc82164f612b44a6d268dc92ed0b00d7525772dacf453/cidc_schemas-0.18.7.tar.gz#sha256=94e7f8c02245a289262c693f9e76b76bd942ab3afc09c2f2f607ee8878470e11 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.7 2020-08-14T15:10:34,810 Found link https://files.pythonhosted.org/packages/34/0a/10f4d221f094eb83247b9f4e8c7f0afc52bdfbdd3533eb7350d953066fb3/cidc_schemas-0.18.8.tar.gz#sha256=d6d189f19f32ba67b1e008e6b34e34521698a4a37b9e3b26863ee5ed299c87e0 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.8 2020-08-14T15:10:34,812 Found link https://files.pythonhosted.org/packages/ed/e2/788620c34fd4063e519f0127a3d6a7eabb30d56324271cd85d687960cfab/cidc_schemas-0.18.9.tar.gz#sha256=894a9e905a663073333fb99611beec98237dce89f7ec368c65fd5d5a28f8df85 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.9 2020-08-14T15:10:34,813 Found link https://files.pythonhosted.org/packages/57/15/e94a60623cc9398148424c75a58141a8a4666477e2857891db520bcb96b0/cidc_schemas-0.18.10.tar.gz#sha256=36112cf9a471957035f2e1f4a5da1f0847788fc717757f09fa3507729d18ca02 (from https://pypi.org/simple/cidc-schemas/) (requires-python:>=3.6), version: 0.18.10 2020-08-14T15:10:34,861 Given no hashes to check 1 links for project 'cidc-schemas': discarding no candidates 2020-08-14T15:10:34,864 Using version 0.18.10 (newest of versions: 0.18.10) 2020-08-14T15:10:34,872 Collecting cidc-schemas==0.18.10 2020-08-14T15:10:34,876 Created temporary directory: /tmp/pip-unpack-sx1kq4cz 2020-08-14T15:10:35,091 Downloading cidc_schemas-0.18.10.tar.gz (214 kB) 2020-08-14T15:10:41,236 Added cidc-schemas==0.18.10 from https://files.pythonhosted.org/packages/57/15/e94a60623cc9398148424c75a58141a8a4666477e2857891db520bcb96b0/cidc_schemas-0.18.10.tar.gz#sha256=36112cf9a471957035f2e1f4a5da1f0847788fc717757f09fa3507729d18ca02 to build tracker '/tmp/pip-req-tracker-93tnt1cs' 2020-08-14T15:10:41,240 Running setup.py (path:/tmp/pip-wheel-9_fr6y86/cidc-schemas/setup.py) egg_info for package cidc-schemas 2020-08-14T15:10:41,242 Created temporary directory: /tmp/pip-pip-egg-info-x2wb_ckz 2020-08-14T15:10:41,243 Running command python setup.py egg_info 2020-08-14T15:10:43,162 running egg_info 2020-08-14T15:10:43,167 creating /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info 2020-08-14T15:10:43,169 writing /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/PKG-INFO 2020-08-14T15:10:43,174 writing dependency_links to /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/dependency_links.txt 2020-08-14T15:10:43,178 writing entry points to /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/entry_points.txt 2020-08-14T15:10:43,181 writing requirements to /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/requires.txt 2020-08-14T15:10:43,183 writing top-level names to /tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/top_level.txt 2020-08-14T15:10:43,187 writing manifest file '/tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/SOURCES.txt' 2020-08-14T15:10:43,483 reading manifest file '/tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/SOURCES.txt' 2020-08-14T15:10:43,488 reading manifest template 'MANIFEST.in' 2020-08-14T15:10:43,589 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-08-14T15:10:43,591 warning: no previously-included files matching '*.py[co]' found under directory '*' 2020-08-14T15:10:43,593 warning: no files found matching '*.rst' under directory 'docs' 2020-08-14T15:10:43,594 warning: no files found matching 'conf.py' under directory 'docs' 2020-08-14T15:10:43,595 warning: no files found matching 'Makefile' under directory 'docs' 2020-08-14T15:10:43,596 warning: no files found matching 'make.bat' under directory 'docs' 2020-08-14T15:10:43,596 warning: no files found matching '*.jpg' under directory 'docs' 2020-08-14T15:10:43,597 warning: no files found matching '*.png' under directory 'docs' 2020-08-14T15:10:43,598 warning: no files found matching '*.gif' under directory 'docs' 2020-08-14T15:10:43,615 writing manifest file '/tmp/pip-pip-egg-info-x2wb_ckz/cidc_schemas.egg-info/SOURCES.txt' 2020-08-14T15:10:43,733 Source in /tmp/pip-wheel-9_fr6y86/cidc-schemas has version 0.18.10, which satisfies requirement cidc-schemas==0.18.10 from https://files.pythonhosted.org/packages/57/15/e94a60623cc9398148424c75a58141a8a4666477e2857891db520bcb96b0/cidc_schemas-0.18.10.tar.gz#sha256=36112cf9a471957035f2e1f4a5da1f0847788fc717757f09fa3507729d18ca02 2020-08-14T15:10:43,735 Removed cidc-schemas==0.18.10 from https://files.pythonhosted.org/packages/57/15/e94a60623cc9398148424c75a58141a8a4666477e2857891db520bcb96b0/cidc_schemas-0.18.10.tar.gz#sha256=36112cf9a471957035f2e1f4a5da1f0847788fc717757f09fa3507729d18ca02 from build tracker '/tmp/pip-req-tracker-93tnt1cs' 2020-08-14T15:10:43,739 Building wheels for collected packages: cidc-schemas 2020-08-14T15:10:43,748 Created temporary directory: /tmp/pip-wheel-_r_rd2m8 2020-08-14T15:10:43,748 Building wheel for cidc-schemas (setup.py): started 2020-08-14T15:10:43,749 Destination directory: /tmp/pip-wheel-_r_rd2m8 2020-08-14T15:10:43,749 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9_fr6y86/cidc-schemas/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9_fr6y86/cidc-schemas/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_r_rd2m8 2020-08-14T15:10:45,586 running bdist_wheel 2020-08-14T15:10:45,599 running build 2020-08-14T15:10:45,599 running build_py 2020-08-14T15:10:45,876 creating build 2020-08-14T15:10:45,876 creating build/lib 2020-08-14T15:10:45,878 creating build/lib/cidc_schemas 2020-08-14T15:10:45,881 copying cidc_schemas/__init__.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,885 copying cidc_schemas/json_validation.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,891 copying cidc_schemas/util.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,895 copying cidc_schemas/constants.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,899 copying cidc_schemas/template.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,905 copying cidc_schemas/cli.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,909 copying cidc_schemas/template_reader.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,914 copying cidc_schemas/unprism.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,919 copying cidc_schemas/template_writer.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,925 copying cidc_schemas/migrations.py -> build/lib/cidc_schemas 2020-08-14T15:10:45,931 creating build/lib/cidc_schemas/prism 2020-08-14T15:10:45,933 copying cidc_schemas/prism/core.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,941 copying cidc_schemas/prism/__init__.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,945 copying cidc_schemas/prism/pipelines.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,950 copying cidc_schemas/prism/extra_metadata.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,954 copying cidc_schemas/prism/constants.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,958 copying cidc_schemas/prism/merger.py -> build/lib/cidc_schemas/prism 2020-08-14T15:10:45,963 running egg_info 2020-08-14T15:10:45,987 writing cidc_schemas.egg-info/PKG-INFO 2020-08-14T15:10:45,991 writing dependency_links to cidc_schemas.egg-info/dependency_links.txt 2020-08-14T15:10:45,995 writing entry points to cidc_schemas.egg-info/entry_points.txt 2020-08-14T15:10:45,997 writing requirements to cidc_schemas.egg-info/requires.txt 2020-08-14T15:10:46,000 writing top-level names to cidc_schemas.egg-info/top_level.txt 2020-08-14T15:10:46,012 reading manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2020-08-14T15:10:46,023 reading manifest template 'MANIFEST.in' 2020-08-14T15:10:46,107 warning: no previously-included files matching '__pycache__' found under directory '*' 2020-08-14T15:10:46,110 warning: no previously-included files matching '*.py[co]' found under directory '*' 2020-08-14T15:10:46,110 warning: no files found matching '*.rst' under directory 'docs' 2020-08-14T15:10:46,111 warning: no files found matching 'conf.py' under directory 'docs' 2020-08-14T15:10:46,111 warning: no files found matching 'Makefile' under directory 'docs' 2020-08-14T15:10:46,112 warning: no files found matching 'make.bat' under directory 'docs' 2020-08-14T15:10:46,112 warning: no files found matching '*.jpg' under directory 'docs' 2020-08-14T15:10:46,112 warning: no files found matching '*.png' under directory 'docs' 2020-08-14T15:10:46,113 warning: no files found matching '*.gif' under directory 'docs' 2020-08-14T15:10:46,136 writing manifest file 'cidc_schemas.egg-info/SOURCES.txt' 2020-08-14T15:10:46,174 creating build/lib/cidc_schemas/metaschema 2020-08-14T15:10:46,176 copying cidc_schemas/metaschema/strict_meta_schema.json -> build/lib/cidc_schemas/metaschema 2020-08-14T15:10:46,182 creating build/lib/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,184 copying cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2 -> build/lib/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,190 copying cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2 -> build/lib/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,195 creating build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,197 copying cidc_schemas/schemas/aliquot.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,203 copying cidc_schemas/schemas/clinical_trial.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,208 copying cidc_schemas/schemas/collection_event.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,213 copying cidc_schemas/schemas/participant.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,218 copying cidc_schemas/schemas/sample.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,225 copying cidc_schemas/schemas/shipping_core.json -> build/lib/cidc_schemas/schemas 2020-08-14T15:10:46,230 creating build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,232 copying cidc_schemas/schemas/artifacts/artifact_bam.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,238 copying cidc_schemas/schemas/artifacts/artifact_bam_bai.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,243 copying cidc_schemas/schemas/artifacts/artifact_binary.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,248 copying cidc_schemas/schemas/artifacts/artifact_core.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,253 copying cidc_schemas/schemas/artifacts/artifact_csv.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,259 copying cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,264 copying cidc_schemas/schemas/artifacts/artifact_fastq_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,269 copying cidc_schemas/schemas/artifacts/artifact_fcs.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,274 copying cidc_schemas/schemas/artifacts/artifact_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,279 copying cidc_schemas/schemas/artifacts/artifact_image.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,284 copying cidc_schemas/schemas/artifacts/artifact_json.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,289 copying cidc_schemas/schemas/artifacts/artifact_maf.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,295 copying cidc_schemas/schemas/artifacts/artifact_npx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,300 copying cidc_schemas/schemas/artifacts/artifact_tbi.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,305 copying cidc_schemas/schemas/artifacts/artifact_text.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,310 copying cidc_schemas/schemas/artifacts/artifact_tsv.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,315 copying cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,320 copying cidc_schemas/schemas/artifacts/artifact_vcf_gz.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,325 copying cidc_schemas/schemas/artifacts/artifact_xlsx.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,331 copying cidc_schemas/schemas/artifacts/artifact_yaml.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,336 copying cidc_schemas/schemas/artifacts/artifact_zip.json -> build/lib/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,341 creating build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,344 copying cidc_schemas/schemas/assays/cytof_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,349 copying cidc_schemas/schemas/assays/elisa_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,354 copying cidc_schemas/schemas/assays/ihc_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,359 copying cidc_schemas/schemas/assays/micsss_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,364 copying cidc_schemas/schemas/assays/mif_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,369 copying cidc_schemas/schemas/assays/olink_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,374 copying cidc_schemas/schemas/assays/rna_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,379 copying cidc_schemas/schemas/assays/wes_assay.json -> build/lib/cidc_schemas/schemas/assays 2020-08-14T15:10:46,384 creating build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,386 copying cidc_schemas/schemas/assays/components/antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,392 copying cidc_schemas/schemas/assays/components/assay_core.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,397 copying cidc_schemas/schemas/assays/components/available_assays.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,402 copying cidc_schemas/schemas/assays/components/available_ngs_analyses.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,408 copying cidc_schemas/schemas/assays/components/composite_image.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,413 copying cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,418 copying cidc_schemas/schemas/assays/components/image.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,423 copying cidc_schemas/schemas/assays/components/imaging_data.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,428 copying cidc_schemas/schemas/assays/components/local_file.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,433 copying cidc_schemas/schemas/assays/components/mapping.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,438 copying cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,444 copying cidc_schemas/schemas/assays/components/mif_antibody.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,449 copying cidc_schemas/schemas/assays/components/multiple_local_files.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,455 copying cidc_schemas/schemas/assays/components/ngs_assay_core.json -> build/lib/cidc_schemas/schemas/assays/components 2020-08-14T15:10:46,460 creating build/lib/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:46,462 copying cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:46,468 copying cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:46,473 copying cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:46,478 copying cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/lib/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:46,484 creating build/lib/cidc_schemas/schemas/assays/components/elisa 2020-08-14T15:10:46,486 copying cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/elisa 2020-08-14T15:10:46,492 creating build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,494 copying cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,500 copying cidc_schemas/schemas/assays/components/imaging/ihc_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,505 copying cidc_schemas/schemas/assays/components/imaging/ihc_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,510 copying cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,515 copying cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,520 copying cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,525 copying cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,531 copying cidc_schemas/schemas/assays/components/imaging/mif_roi.json -> build/lib/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:46,536 creating build/lib/cidc_schemas/schemas/assays/components/ngs 2020-08-14T15:10:46,538 copying cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json -> build/lib/cidc_schemas/schemas/assays/components/ngs 2020-08-14T15:10:46,544 creating build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,546 copying cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,552 copying cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,558 copying cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_level1_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,563 copying cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,569 copying cidc_schemas/schemas/assays/components/ngs/rna/salmon.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,574 copying cidc_schemas/schemas/assays/components/ngs/rna/star.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:46,579 creating build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,582 copying cidc_schemas/schemas/assays/components/ngs/wes/alignment.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,587 copying cidc_schemas/schemas/assays/components/ngs/wes/clonality.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,593 copying cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,598 copying cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,604 copying cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,610 copying cidc_schemas/schemas/assays/components/ngs/wes/germline.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,615 copying cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,620 copying cidc_schemas/schemas/assays/components/ngs/wes/optitype.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,626 copying cidc_schemas/schemas/assays/components/ngs/wes/purity.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,632 copying cidc_schemas/schemas/assays/components/ngs/wes/report.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,637 copying cidc_schemas/schemas/assays/components/ngs/wes/somatic.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,642 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,649 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,655 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,661 copying cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json -> build/lib/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:46,666 creating build/lib/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:46,668 copying cidc_schemas/schemas/assays/components/olink/olink_combined.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:46,673 copying cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:46,678 copying cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/lib/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:46,683 creating build/lib/cidc_schemas/schemas/templates 2020-08-14T15:10:46,684 creating build/lib/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:46,687 copying cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json -> build/lib/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:46,693 copying cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json -> build/lib/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:46,701 copying cidc_schemas/schemas/templates/analyses/wes_analysis_template.json -> build/lib/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:46,709 creating build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,711 copying cidc_schemas/schemas/templates/manifests/h_and_e_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,718 copying cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,725 copying cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,732 copying cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,739 copying cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,746 copying cidc_schemas/schemas/templates/manifests/tissue_slide_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,752 copying cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,758 copying cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,765 copying cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json -> build/lib/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:46,771 creating build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,773 copying cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,780 copying cidc_schemas/schemas/templates/metadata/elisa_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,786 copying cidc_schemas/schemas/templates/metadata/ihc_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,793 copying cidc_schemas/schemas/templates/metadata/mif_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,800 copying cidc_schemas/schemas/templates/metadata/olink_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,807 copying cidc_schemas/schemas/templates/metadata/rna_bam_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,813 copying cidc_schemas/schemas/templates/metadata/rna_fastq_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,818 copying cidc_schemas/schemas/templates/metadata/wes_bam_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,824 copying cidc_schemas/schemas/templates/metadata/wes_fastq_template.json -> build/lib/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:46,838 installing to build/bdist.linux-armv7l/wheel 2020-08-14T15:10:46,839 running install 2020-08-14T15:10:46,840 running install_lib 2020-08-14T15:10:46,847 creating build/bdist.linux-armv7l 2020-08-14T15:10:46,848 creating build/bdist.linux-armv7l/wheel 2020-08-14T15:10:46,852 creating build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,855 copying build/lib/cidc_schemas/__init__.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,860 copying build/lib/cidc_schemas/json_validation.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,867 copying build/lib/cidc_schemas/util.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,872 copying build/lib/cidc_schemas/constants.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,876 copying build/lib/cidc_schemas/template.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:46,883 creating build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,885 copying build/lib/cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2 -> build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,890 copying build/lib/cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2 -> build/bdist.linux-armv7l/wheel/cidc_schemas/pipeline_configs 2020-08-14T15:10:46,895 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:46,897 copying build/lib/cidc_schemas/schemas/sample.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:46,904 copying build/lib/cidc_schemas/schemas/clinical_trial.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:46,910 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,912 copying build/lib/cidc_schemas/schemas/artifacts/artifact_fastq_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,917 copying build/lib/cidc_schemas/schemas/artifacts/artifact_yaml.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,922 copying build/lib/cidc_schemas/schemas/artifacts/artifact_json.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,926 copying build/lib/cidc_schemas/schemas/artifacts/artifact_npx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,931 copying build/lib/cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,935 copying build/lib/cidc_schemas/schemas/artifacts/artifact_tsv.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,940 copying build/lib/cidc_schemas/schemas/artifacts/artifact_vcf_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,944 copying build/lib/cidc_schemas/schemas/artifacts/artifact_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,949 copying build/lib/cidc_schemas/schemas/artifacts/artifact_vcf.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,954 copying build/lib/cidc_schemas/schemas/artifacts/artifact_fcs.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,958 copying build/lib/cidc_schemas/schemas/artifacts/artifact_csv.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,963 copying build/lib/cidc_schemas/schemas/artifacts/artifact_tbi.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,967 copying build/lib/cidc_schemas/schemas/artifacts/artifact_maf.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,972 copying build/lib/cidc_schemas/schemas/artifacts/artifact_bam.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,976 copying build/lib/cidc_schemas/schemas/artifacts/artifact_gz.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,981 copying build/lib/cidc_schemas/schemas/artifacts/artifact_bam_bai.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,985 copying build/lib/cidc_schemas/schemas/artifacts/artifact_text.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,990 copying build/lib/cidc_schemas/schemas/artifacts/artifact_zip.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,995 copying build/lib/cidc_schemas/schemas/artifacts/artifact_binary.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:46,999 copying build/lib/cidc_schemas/schemas/artifacts/artifact_xlsx.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:47,003 copying build/lib/cidc_schemas/schemas/artifacts/artifact_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/artifacts 2020-08-14T15:10:47,008 copying build/lib/cidc_schemas/schemas/participant.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:47,013 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,015 copying build/lib/cidc_schemas/schemas/assays/micsss_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,020 copying build/lib/cidc_schemas/schemas/assays/wes_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,024 copying build/lib/cidc_schemas/schemas/assays/mif_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,028 copying build/lib/cidc_schemas/schemas/assays/elisa_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,033 copying build/lib/cidc_schemas/schemas/assays/rna_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,037 copying build/lib/cidc_schemas/schemas/assays/cytof_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,041 copying build/lib/cidc_schemas/schemas/assays/ihc_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,047 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,049 copying build/lib/cidc_schemas/schemas/assays/components/image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,054 copying build/lib/cidc_schemas/schemas/assays/components/available_assays.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,060 copying build/lib/cidc_schemas/schemas/assays/components/mif_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,066 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2020-08-14T15:10:47,069 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,071 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,076 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/star.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,081 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,085 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,090 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_level1_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,094 copying build/lib/cidc_schemas/schemas/assays/components/ngs/rna/salmon.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/rna 2020-08-14T15:10:47,098 copying build/lib/cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs 2020-08-14T15:10:47,104 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,106 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,111 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,115 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,120 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,124 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,128 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/germline.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,133 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/optitype.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,137 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,142 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/clonality.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,146 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/alignment.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,150 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/somatic.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,155 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/report.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,159 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,163 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,167 copying build/lib/cidc_schemas/schemas/assays/components/ngs/wes/purity.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/ngs/wes 2020-08-14T15:10:47,172 copying build/lib/cidc_schemas/schemas/assays/components/multiple_local_files.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,177 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:47,179 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:47,184 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:47,189 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:47,194 copying build/lib/cidc_schemas/schemas/assays/components/cytof/cytof_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/cytof 2020-08-14T15:10:47,198 copying build/lib/cidc_schemas/schemas/assays/components/assay_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,202 copying build/lib/cidc_schemas/schemas/assays/components/local_file.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,208 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/elisa 2020-08-14T15:10:47,210 copying build/lib/cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/elisa 2020-08-14T15:10:47,216 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,218 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,223 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,227 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,231 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,236 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,240 copying build/lib/cidc_schemas/schemas/assays/components/imaging/micsss_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,245 copying build/lib/cidc_schemas/schemas/assays/components/imaging/mif_roi.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,249 copying build/lib/cidc_schemas/schemas/assays/components/imaging/ihc_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/imaging 2020-08-14T15:10:47,254 copying build/lib/cidc_schemas/schemas/assays/components/mapping.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,258 copying build/lib/cidc_schemas/schemas/assays/components/imaging_data.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,262 copying build/lib/cidc_schemas/schemas/assays/components/composite_image.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,267 copying build/lib/cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,271 copying build/lib/cidc_schemas/schemas/assays/components/antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,275 copying build/lib/cidc_schemas/schemas/assays/components/ngs_assay_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,281 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:47,283 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_entry.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:47,288 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_combined.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:47,292 copying build/lib/cidc_schemas/schemas/assays/components/olink/olink_input.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components/olink 2020-08-14T15:10:47,297 copying build/lib/cidc_schemas/schemas/assays/components/available_ngs_analyses.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,301 copying build/lib/cidc_schemas/schemas/assays/components/micsss_antibody.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays/components 2020-08-14T15:10:47,306 copying build/lib/cidc_schemas/schemas/assays/olink_assay.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/assays 2020-08-14T15:10:47,311 copying build/lib/cidc_schemas/schemas/shipping_core.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:47,316 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates 2020-08-14T15:10:47,320 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:47,322 copying build/lib/cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:47,328 copying build/lib/cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:47,334 copying build/lib/cidc_schemas/schemas/templates/analyses/wes_analysis_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/analyses 2020-08-14T15:10:47,343 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,345 copying build/lib/cidc_schemas/schemas/templates/metadata/rna_fastq_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,350 copying build/lib/cidc_schemas/schemas/templates/metadata/olink_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,355 copying build/lib/cidc_schemas/schemas/templates/metadata/wes_fastq_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,359 copying build/lib/cidc_schemas/schemas/templates/metadata/rna_bam_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,364 copying build/lib/cidc_schemas/schemas/templates/metadata/elisa_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,369 copying build/lib/cidc_schemas/schemas/templates/metadata/ihc_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,374 copying build/lib/cidc_schemas/schemas/templates/metadata/cytof_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,380 copying build/lib/cidc_schemas/schemas/templates/metadata/mif_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,385 copying build/lib/cidc_schemas/schemas/templates/metadata/wes_bam_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/metadata 2020-08-14T15:10:47,391 creating build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,393 copying build/lib/cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,399 copying build/lib/cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,405 copying build/lib/cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,410 copying build/lib/cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,415 copying build/lib/cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,421 copying build/lib/cidc_schemas/schemas/templates/manifests/tissue_slide_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,427 copying build/lib/cidc_schemas/schemas/templates/manifests/h_and_e_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,433 copying build/lib/cidc_schemas/schemas/templates/manifests/plasma_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,439 copying build/lib/cidc_schemas/schemas/templates/manifests/pbmc_template.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas/templates/manifests 2020-08-14T15:10:47,445 copying build/lib/cidc_schemas/schemas/aliquot.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:47,449 copying build/lib/cidc_schemas/schemas/collection_event.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/schemas 2020-08-14T15:10:47,454 copying build/lib/cidc_schemas/cli.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:47,460 creating build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,462 copying build/lib/cidc_schemas/prism/core.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,471 copying build/lib/cidc_schemas/prism/__init__.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,476 copying build/lib/cidc_schemas/prism/pipelines.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,482 copying build/lib/cidc_schemas/prism/extra_metadata.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,487 copying build/lib/cidc_schemas/prism/constants.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,492 copying build/lib/cidc_schemas/prism/merger.py -> build/bdist.linux-armv7l/wheel/cidc_schemas/prism 2020-08-14T15:10:47,500 creating build/bdist.linux-armv7l/wheel/cidc_schemas/metaschema 2020-08-14T15:10:47,503 copying build/lib/cidc_schemas/metaschema/strict_meta_schema.json -> build/bdist.linux-armv7l/wheel/cidc_schemas/metaschema 2020-08-14T15:10:47,510 copying build/lib/cidc_schemas/template_reader.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:47,516 copying build/lib/cidc_schemas/unprism.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:47,521 copying build/lib/cidc_schemas/template_writer.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:47,528 copying build/lib/cidc_schemas/migrations.py -> build/bdist.linux-armv7l/wheel/cidc_schemas 2020-08-14T15:10:47,532 running install_egg_info 2020-08-14T15:10:47,547 Copying cidc_schemas.egg-info to build/bdist.linux-armv7l/wheel/cidc_schemas-0.18.10-py3.7.egg-info 2020-08-14T15:10:47,582 running install_scripts 2020-08-14T15:10:47,741 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2020-08-14T15:10:47,746 adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") 2020-08-14T15:10:47,758 creating build/bdist.linux-armv7l/wheel/cidc_schemas-0.18.10.dist-info/WHEEL 2020-08-14T15:10:47,763 creating '/tmp/pip-wheel-_r_rd2m8/cidc_schemas-0.18.10-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-08-14T15:10:47,768 adding 'cidc_schemas/__init__.py' 2020-08-14T15:10:47,771 adding 'cidc_schemas/cli.py' 2020-08-14T15:10:47,773 adding 'cidc_schemas/constants.py' 2020-08-14T15:10:47,778 adding 'cidc_schemas/json_validation.py' 2020-08-14T15:10:47,782 adding 'cidc_schemas/migrations.py' 2020-08-14T15:10:47,786 adding 'cidc_schemas/template.py' 2020-08-14T15:10:47,790 adding 'cidc_schemas/template_reader.py' 2020-08-14T15:10:47,795 adding 'cidc_schemas/template_writer.py' 2020-08-14T15:10:47,798 adding 'cidc_schemas/unprism.py' 2020-08-14T15:10:47,801 adding 'cidc_schemas/util.py' 2020-08-14T15:10:47,805 adding 'cidc_schemas/metaschema/strict_meta_schema.json' 2020-08-14T15:10:47,809 adding 'cidc_schemas/pipeline_configs/rna_level1_analysis_config.yaml.j2' 2020-08-14T15:10:47,812 adding 'cidc_schemas/pipeline_configs/wes_analysis_config.yaml.j2' 2020-08-14T15:10:47,815 adding 'cidc_schemas/prism/__init__.py' 2020-08-14T15:10:47,818 adding 'cidc_schemas/prism/constants.py' 2020-08-14T15:10:47,825 adding 'cidc_schemas/prism/core.py' 2020-08-14T15:10:47,828 adding 'cidc_schemas/prism/extra_metadata.py' 2020-08-14T15:10:47,831 adding 'cidc_schemas/prism/merger.py' 2020-08-14T15:10:47,835 adding 'cidc_schemas/prism/pipelines.py' 2020-08-14T15:10:47,839 adding 'cidc_schemas/schemas/aliquot.json' 2020-08-14T15:10:47,842 adding 'cidc_schemas/schemas/clinical_trial.json' 2020-08-14T15:10:47,844 adding 'cidc_schemas/schemas/collection_event.json' 2020-08-14T15:10:47,847 adding 'cidc_schemas/schemas/participant.json' 2020-08-14T15:10:47,851 adding 'cidc_schemas/schemas/sample.json' 2020-08-14T15:10:47,854 adding 'cidc_schemas/schemas/shipping_core.json' 2020-08-14T15:10:47,858 adding 'cidc_schemas/schemas/artifacts/artifact_bam.json' 2020-08-14T15:10:47,861 adding 'cidc_schemas/schemas/artifacts/artifact_bam_bai.json' 2020-08-14T15:10:47,863 adding 'cidc_schemas/schemas/artifacts/artifact_binary.json' 2020-08-14T15:10:47,866 adding 'cidc_schemas/schemas/artifacts/artifact_core.json' 2020-08-14T15:10:47,869 adding 'cidc_schemas/schemas/artifacts/artifact_csv.json' 2020-08-14T15:10:47,871 adding 'cidc_schemas/schemas/artifacts/artifact_elisa_xlsx.json' 2020-08-14T15:10:47,874 adding 'cidc_schemas/schemas/artifacts/artifact_fastq_gz.json' 2020-08-14T15:10:47,876 adding 'cidc_schemas/schemas/artifacts/artifact_fcs.json' 2020-08-14T15:10:47,879 adding 'cidc_schemas/schemas/artifacts/artifact_gz.json' 2020-08-14T15:10:47,881 adding 'cidc_schemas/schemas/artifacts/artifact_image.json' 2020-08-14T15:10:47,884 adding 'cidc_schemas/schemas/artifacts/artifact_json.json' 2020-08-14T15:10:47,886 adding 'cidc_schemas/schemas/artifacts/artifact_maf.json' 2020-08-14T15:10:47,889 adding 'cidc_schemas/schemas/artifacts/artifact_npx.json' 2020-08-14T15:10:47,891 adding 'cidc_schemas/schemas/artifacts/artifact_tbi.json' 2020-08-14T15:10:47,894 adding 'cidc_schemas/schemas/artifacts/artifact_text.json' 2020-08-14T15:10:47,896 adding 'cidc_schemas/schemas/artifacts/artifact_tsv.json' 2020-08-14T15:10:47,899 adding 'cidc_schemas/schemas/artifacts/artifact_vcf.json' 2020-08-14T15:10:47,901 adding 'cidc_schemas/schemas/artifacts/artifact_vcf_gz.json' 2020-08-14T15:10:47,904 adding 'cidc_schemas/schemas/artifacts/artifact_xlsx.json' 2020-08-14T15:10:47,906 adding 'cidc_schemas/schemas/artifacts/artifact_yaml.json' 2020-08-14T15:10:47,909 adding 'cidc_schemas/schemas/artifacts/artifact_zip.json' 2020-08-14T15:10:47,913 adding 'cidc_schemas/schemas/assays/cytof_assay.json' 2020-08-14T15:10:47,915 adding 'cidc_schemas/schemas/assays/elisa_assay.json' 2020-08-14T15:10:47,918 adding 'cidc_schemas/schemas/assays/ihc_assay.json' 2020-08-14T15:10:47,920 adding 'cidc_schemas/schemas/assays/micsss_assay.json' 2020-08-14T15:10:47,923 adding 'cidc_schemas/schemas/assays/mif_assay.json' 2020-08-14T15:10:47,925 adding 'cidc_schemas/schemas/assays/olink_assay.json' 2020-08-14T15:10:47,928 adding 'cidc_schemas/schemas/assays/rna_assay.json' 2020-08-14T15:10:47,931 adding 'cidc_schemas/schemas/assays/wes_assay.json' 2020-08-14T15:10:47,935 adding 'cidc_schemas/schemas/assays/components/antibody.json' 2020-08-14T15:10:47,937 adding 'cidc_schemas/schemas/assays/components/assay_core.json' 2020-08-14T15:10:47,940 adding 'cidc_schemas/schemas/assays/components/available_assays.json' 2020-08-14T15:10:47,942 adding 'cidc_schemas/schemas/assays/components/available_ngs_analyses.json' 2020-08-14T15:10:47,945 adding 'cidc_schemas/schemas/assays/components/composite_image.json' 2020-08-14T15:10:47,947 adding 'cidc_schemas/schemas/assays/components/fastq_pair_or_bam.json' 2020-08-14T15:10:47,950 adding 'cidc_schemas/schemas/assays/components/image.json' 2020-08-14T15:10:47,952 adding 'cidc_schemas/schemas/assays/components/imaging_data.json' 2020-08-14T15:10:47,955 adding 'cidc_schemas/schemas/assays/components/local_file.json' 2020-08-14T15:10:47,957 adding 'cidc_schemas/schemas/assays/components/mapping.json' 2020-08-14T15:10:47,960 adding 'cidc_schemas/schemas/assays/components/micsss_antibody.json' 2020-08-14T15:10:47,962 adding 'cidc_schemas/schemas/assays/components/mif_antibody.json' 2020-08-14T15:10:47,965 adding 'cidc_schemas/schemas/assays/components/multiple_local_files.json' 2020-08-14T15:10:47,967 adding 'cidc_schemas/schemas/assays/components/ngs_assay_core.json' 2020-08-14T15:10:47,971 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_analysis.json' 2020-08-14T15:10:47,974 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_antibody.json' 2020-08-14T15:10:47,976 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_entry.json' 2020-08-14T15:10:47,979 adding 'cidc_schemas/schemas/assays/components/cytof/cytof_input.json' 2020-08-14T15:10:47,983 adding 'cidc_schemas/schemas/assays/components/elisa/elisa_antibody.json' 2020-08-14T15:10:47,987 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_antibody.json' 2020-08-14T15:10:47,989 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_entry.json' 2020-08-14T15:10:47,992 adding 'cidc_schemas/schemas/assays/components/imaging/ihc_input.json' 2020-08-14T15:10:47,994 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_entry.json' 2020-08-14T15:10:47,997 adding 'cidc_schemas/schemas/assays/components/imaging/micsss_input.json' 2020-08-14T15:10:47,999 adding 'cidc_schemas/schemas/assays/components/imaging/mif_entry.json' 2020-08-14T15:10:48,002 adding 'cidc_schemas/schemas/assays/components/imaging/mif_input.json' 2020-08-14T15:10:48,004 adding 'cidc_schemas/schemas/assays/components/imaging/mif_roi.json' 2020-08-14T15:10:48,008 adding 'cidc_schemas/schemas/assays/components/ngs/ngs_assay_record.json' 2020-08-14T15:10:48,012 adding 'cidc_schemas/schemas/assays/components/ngs/rna/rna_entry.json' 2020-08-14T15:10:48,015 adding 'cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_analysis.json' 2020-08-14T15:10:48,017 adding 'cidc_schemas/schemas/assays/components/ngs/rna/rnaseq_level1_analysis.json' 2020-08-14T15:10:48,020 adding 'cidc_schemas/schemas/assays/components/ngs/rna/rseqc.json' 2020-08-14T15:10:48,022 adding 'cidc_schemas/schemas/assays/components/ngs/rna/salmon.json' 2020-08-14T15:10:48,025 adding 'cidc_schemas/schemas/assays/components/ngs/rna/star.json' 2020-08-14T15:10:48,029 adding 'cidc_schemas/schemas/assays/components/ngs/wes/alignment.json' 2020-08-14T15:10:48,031 adding 'cidc_schemas/schemas/assays/components/ngs/wes/clonality.json' 2020-08-14T15:10:48,034 adding 'cidc_schemas/schemas/assays/components/ngs/wes/copynumber.json' 2020-08-14T15:10:48,036 adding 'cidc_schemas/schemas/assays/components/ngs/wes/corealignments.json' 2020-08-14T15:10:48,039 adding 'cidc_schemas/schemas/assays/components/ngs/wes/coverage_metrics.json' 2020-08-14T15:10:48,041 adding 'cidc_schemas/schemas/assays/components/ngs/wes/germline.json' 2020-08-14T15:10:48,044 adding 'cidc_schemas/schemas/assays/components/ngs/wes/neoantigen.json' 2020-08-14T15:10:48,046 adding 'cidc_schemas/schemas/assays/components/ngs/wes/optitype.json' 2020-08-14T15:10:48,048 adding 'cidc_schemas/schemas/assays/components/ngs/wes/purity.json' 2020-08-14T15:10:48,051 adding 'cidc_schemas/schemas/assays/components/ngs/wes/report.json' 2020-08-14T15:10:48,053 adding 'cidc_schemas/schemas/assays/components/ngs/wes/somatic.json' 2020-08-14T15:10:48,056 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_analysis.json' 2020-08-14T15:10:48,058 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_entry.json' 2020-08-14T15:10:48,061 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_pair_analysis.json' 2020-08-14T15:10:48,063 adding 'cidc_schemas/schemas/assays/components/ngs/wes/wes_sample_analysis.json' 2020-08-14T15:10:48,067 adding 'cidc_schemas/schemas/assays/components/olink/olink_combined.json' 2020-08-14T15:10:48,070 adding 'cidc_schemas/schemas/assays/components/olink/olink_entry.json' 2020-08-14T15:10:48,072 adding 'cidc_schemas/schemas/assays/components/olink/olink_input.json' 2020-08-14T15:10:48,078 adding 'cidc_schemas/schemas/templates/analyses/cytof_analysis_template.json' 2020-08-14T15:10:48,081 adding 'cidc_schemas/schemas/templates/analyses/rna_level1_analysis_template.json' 2020-08-14T15:10:48,085 adding 'cidc_schemas/schemas/templates/analyses/wes_analysis_template.json' 2020-08-14T15:10:48,090 adding 'cidc_schemas/schemas/templates/manifests/h_and_e_template.json' 2020-08-14T15:10:48,093 adding 'cidc_schemas/schemas/templates/manifests/normal_blood_dna_template.json' 2020-08-14T15:10:48,097 adding 'cidc_schemas/schemas/templates/manifests/normal_tissue_dna_template.json' 2020-08-14T15:10:48,100 adding 'cidc_schemas/schemas/templates/manifests/pbmc_template.json' 2020-08-14T15:10:48,104 adding 'cidc_schemas/schemas/templates/manifests/plasma_template.json' 2020-08-14T15:10:48,107 adding 'cidc_schemas/schemas/templates/manifests/tissue_slide_template.json' 2020-08-14T15:10:48,110 adding 'cidc_schemas/schemas/templates/manifests/tumor_normal_pairing_template.json' 2020-08-14T15:10:48,113 adding 'cidc_schemas/schemas/templates/manifests/tumor_tissue_dna_template.json' 2020-08-14T15:10:48,117 adding 'cidc_schemas/schemas/templates/manifests/tumor_tissue_rna_template.json' 2020-08-14T15:10:48,122 adding 'cidc_schemas/schemas/templates/metadata/cytof_template.json' 2020-08-14T15:10:48,124 adding 'cidc_schemas/schemas/templates/metadata/elisa_template.json' 2020-08-14T15:10:48,127 adding 'cidc_schemas/schemas/templates/metadata/ihc_template.json' 2020-08-14T15:10:48,131 adding 'cidc_schemas/schemas/templates/metadata/mif_template.json' 2020-08-14T15:10:48,134 adding 'cidc_schemas/schemas/templates/metadata/olink_template.json' 2020-08-14T15:10:48,136 adding 'cidc_schemas/schemas/templates/metadata/rna_bam_template.json' 2020-08-14T15:10:48,139 adding 'cidc_schemas/schemas/templates/metadata/rna_fastq_template.json' 2020-08-14T15:10:48,141 adding 'cidc_schemas/schemas/templates/metadata/wes_bam_template.json' 2020-08-14T15:10:48,144 adding 'cidc_schemas/schemas/templates/metadata/wes_fastq_template.json' 2020-08-14T15:10:48,149 adding 'cidc_schemas-0.18.10.dist-info/AUTHORS.rst' 2020-08-14T15:10:48,151 adding 'cidc_schemas-0.18.10.dist-info/LICENSE' 2020-08-14T15:10:48,153 adding 'cidc_schemas-0.18.10.dist-info/METADATA' 2020-08-14T15:10:48,155 adding 'cidc_schemas-0.18.10.dist-info/WHEEL' 2020-08-14T15:10:48,157 adding 'cidc_schemas-0.18.10.dist-info/entry_points.txt' 2020-08-14T15:10:48,159 adding 'cidc_schemas-0.18.10.dist-info/top_level.txt' 2020-08-14T15:10:48,163 adding 'cidc_schemas-0.18.10.dist-info/RECORD' 2020-08-14T15:10:48,180 removing build/bdist.linux-armv7l/wheel 2020-08-14T15:10:48,412 Building wheel for cidc-schemas (setup.py): finished with status 'done' 2020-08-14T15:10:48,418 Created wheel for cidc-schemas: filename=cidc_schemas-0.18.10-py2.py3-none-any.whl size=137712 sha256=f2e505008dabee531ccc7d59ea89baedb3d27b6a0d97b689b5a1bfecd79aedfd 2020-08-14T15:10:48,419 Stored in directory: /tmp/pip-ephem-wheel-cache-gh2ch8y6/wheels/7d/c5/d7/d093eec1d981fbb891e997f707fdc027231409c1b9128ee18a 2020-08-14T15:10:48,423 Successfully built cidc-schemas 2020-08-14T15:10:48,453 Removed build tracker: '/tmp/pip-req-tracker-93tnt1cs'