2020-08-19T09:33:11,956 Created temporary directory: /tmp/pip-ephem-wheel-cache-upum321u 2020-08-19T09:33:11,961 Created temporary directory: /tmp/pip-req-tracker-406nbmvw 2020-08-19T09:33:11,962 Initialized build tracking at /tmp/pip-req-tracker-406nbmvw 2020-08-19T09:33:11,962 Created build tracker: /tmp/pip-req-tracker-406nbmvw 2020-08-19T09:33:11,963 Entered build tracker: /tmp/pip-req-tracker-406nbmvw 2020-08-19T09:33:11,965 Created temporary directory: /tmp/pip-wheel-1mxbl1os 2020-08-19T09:33:12,025 1 location(s) to search for versions of h1s: 2020-08-19T09:33:12,025 * https://pypi.org/simple/h1s/ 2020-08-19T09:33:12,026 Fetching project page and analyzing links: https://pypi.org/simple/h1s/ 2020-08-19T09:33:12,027 Getting page https://pypi.org/simple/h1s/ 2020-08-19T09:33:12,030 Found index url https://pypi.org/simple 2020-08-19T09:33:12,297 Found link https://files.pythonhosted.org/packages/8c/1f/249d78d6f5c1efef2158301b18a5d076a3b2b6fbfbca27f961ffb7de3184/h1s-2.1.0-py3-none-any.whl#sha256=868cf2c9ebcf5df9d24b25259f0e91c8c26c94d8dcc7094b1cb0eaf77c6609e1 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.0 2020-08-19T09:33:12,299 Found link https://files.pythonhosted.org/packages/e1/dd/fb8acebc191cc93610bd64b9c5de03c67577e07460f66049d7062d59b1bc/h1s-2.1.0.tar.gz#sha256=796315bbec1f23d9fe28b45bf9a36f093d2a712136232b21a115f548e5bb4ce0 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.0 2020-08-19T09:33:12,300 Found link https://files.pythonhosted.org/packages/43/09/39ebc33aad87f168fdfdf5d0fc4b8dc4b19400900a0ac003092f9d14f896/h1s-2.1.1-py3-none-any.whl#sha256=9f82ab7d4e62a825f3fe6e2015cf82694c4b69435be5004ecbaf7cd1e4ba0290 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.1 2020-08-19T09:33:12,302 Found link https://files.pythonhosted.org/packages/47/ec/a25cecd5fd47a86393c96c9935e7cf1b99bd16cf67c0ca9acf519562b517/h1s-2.1.1.tar.gz#sha256=2c34f87583387ad13e2366d2dfd8328010db683b0b7b7095bb7544655b845298 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.1 2020-08-19T09:33:12,303 Found link https://files.pythonhosted.org/packages/b9/ee/06429f8e84e5a930e50ebad6023fee4154101ab9755ca0913b39256e1b35/h1s-2.1.2-py3-none-any.whl#sha256=1f6254fe5dd7474e9a6e74a357af17d5ff5d590a1e27879af5858341d37be66e (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.2 2020-08-19T09:33:12,305 Found link https://files.pythonhosted.org/packages/2f/17/e87cae27c8a233e333eddfdd27872e59fd37ea3ce7396fb7455504f20648/h1s-2.1.2.tar.gz#sha256=34da285adfa241750a3e2e9c3fa6d168aba1bbb1f4c14b9495f3af1aeaeffd01 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.2 2020-08-19T09:33:12,307 Found link https://files.pythonhosted.org/packages/b4/dd/3cb9b23266db2155d56de3358bb4b1ffaf8fed60b3fefcc1e4c817fa3f52/h1s-2.1.3.tar.gz#sha256=fcc959747ae0f0ed263c1b18527355b54de0cf8c56ff536c6216b87bb9f046d3 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.3 2020-08-19T09:33:12,308 Found link https://files.pythonhosted.org/packages/bc/98/448ddb840c65732768286c232af344f992d09ac08ce4dca687f060898edd/h1s-2.1.4.tar.gz#sha256=0024f80141c395f62eadbfd4751eec3e4313b79bfba19e3eb218573cfe3778a2 (from https://pypi.org/simple/h1s/) (requires-python:>=3.7.0), version: 2.1.4 2020-08-19T09:33:12,312 Given no hashes to check 1 links for project 'h1s': discarding no candidates 2020-08-19T09:33:12,313 Using version 2.1.4 (newest of versions: 2.1.4) 2020-08-19T09:33:12,322 Collecting h1s==2.1.4 2020-08-19T09:33:12,325 Created temporary directory: /tmp/pip-unpack-vnzral0j 2020-08-19T09:33:12,537 Downloading h1s-2.1.4.tar.gz (81 kB) 2020-08-19T09:33:12,786 Added h1s==2.1.4 from https://files.pythonhosted.org/packages/bc/98/448ddb840c65732768286c232af344f992d09ac08ce4dca687f060898edd/h1s-2.1.4.tar.gz#sha256=0024f80141c395f62eadbfd4751eec3e4313b79bfba19e3eb218573cfe3778a2 to build tracker '/tmp/pip-req-tracker-406nbmvw' 2020-08-19T09:33:12,788 Running setup.py (path:/tmp/pip-wheel-1mxbl1os/h1s/setup.py) egg_info for package h1s 2020-08-19T09:33:12,789 Created temporary directory: /tmp/pip-pip-egg-info-751qtzdq 2020-08-19T09:33:12,790 Running command python setup.py egg_info 2020-08-19T09:33:15,424 running egg_info 2020-08-19T09:33:15,428 creating /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info 2020-08-19T09:33:15,431 writing /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/PKG-INFO 2020-08-19T09:33:15,438 writing dependency_links to /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/dependency_links.txt 2020-08-19T09:33:15,441 writing entry points to /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/entry_points.txt 2020-08-19T09:33:15,444 writing requirements to /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/requires.txt 2020-08-19T09:33:15,446 writing top-level names to /tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/top_level.txt 2020-08-19T09:33:15,451 writing manifest file '/tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/SOURCES.txt' 2020-08-19T09:33:15,895 reading manifest file '/tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/SOURCES.txt' 2020-08-19T09:33:15,898 reading manifest template 'MANIFEST.in' 2020-08-19T09:33:15,901 warning: no files found matching '*' under directory 'hamstr1s' 2020-08-19T09:33:15,906 writing manifest file '/tmp/pip-pip-egg-info-751qtzdq/h1s.egg-info/SOURCES.txt' 2020-08-19T09:33:16,024 Source in /tmp/pip-wheel-1mxbl1os/h1s has version 2.1.4, which satisfies requirement h1s==2.1.4 from https://files.pythonhosted.org/packages/bc/98/448ddb840c65732768286c232af344f992d09ac08ce4dca687f060898edd/h1s-2.1.4.tar.gz#sha256=0024f80141c395f62eadbfd4751eec3e4313b79bfba19e3eb218573cfe3778a2 2020-08-19T09:33:16,026 Removed h1s==2.1.4 from https://files.pythonhosted.org/packages/bc/98/448ddb840c65732768286c232af344f992d09ac08ce4dca687f060898edd/h1s-2.1.4.tar.gz#sha256=0024f80141c395f62eadbfd4751eec3e4313b79bfba19e3eb218573cfe3778a2 from build tracker '/tmp/pip-req-tracker-406nbmvw' 2020-08-19T09:33:16,031 Building wheels for collected packages: h1s 2020-08-19T09:33:16,040 Created temporary directory: /tmp/pip-wheel-zia6e7fx 2020-08-19T09:33:16,041 Building wheel for h1s (setup.py): started 2020-08-19T09:33:16,041 Destination directory: /tmp/pip-wheel-zia6e7fx 2020-08-19T09:33:16,042 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1mxbl1os/h1s/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1mxbl1os/h1s/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-zia6e7fx 2020-08-19T09:33:17,862 running bdist_wheel 2020-08-19T09:33:17,885 running build 2020-08-19T09:33:17,886 running build_py 2020-08-19T09:33:18,165 creating build 2020-08-19T09:33:18,165 creating build/lib 2020-08-19T09:33:18,167 creating build/lib/h1s 2020-08-19T09:33:18,170 copying h1s/__init__.py -> build/lib/h1s 2020-08-19T09:33:18,174 copying h1s/setup1s.py -> build/lib/h1s 2020-08-19T09:33:18,179 copying h1s/runOneseq.py -> build/lib/h1s 2020-08-19T09:33:18,186 copying h1s/remove1s.py -> build/lib/h1s 2020-08-19T09:33:18,191 copying h1s/merge1sOutput.py -> build/lib/h1s 2020-08-19T09:33:18,196 copying h1s/addTaxon1s.py -> build/lib/h1s 2020-08-19T09:33:18,202 copying h1s/checkData1s.py -> build/lib/h1s 2020-08-19T09:33:18,208 copying h1s/addTaxa1s.py -> build/lib/h1s 2020-08-19T09:33:18,214 creating build/lib/h1s/data 2020-08-19T09:33:18,216 copying h1s/data/__init__.py -> build/lib/h1s/data 2020-08-19T09:33:18,221 creating build/lib/h1s/setup 2020-08-19T09:33:18,223 copying h1s/setup/__init__.py -> build/lib/h1s/setup 2020-08-19T09:33:18,228 creating build/lib/h1s/bin 2020-08-19T09:33:18,230 copying h1s/bin/__init__.py -> build/lib/h1s/bin 2020-08-19T09:33:18,252 copying h1s/data/infile.fa -> build/lib/h1s/data 2020-08-19T09:33:18,258 copying h1s/setup/setup.sh -> build/lib/h1s/setup 2020-08-19T09:33:18,265 copying h1s/setup/install_lib.sh -> build/lib/h1s/setup 2020-08-19T09:33:18,270 copying h1s/setup/indexTaxonomy.pl -> build/lib/h1s/setup 2020-08-19T09:33:18,275 copying h1s/setup/setup_conda.sh -> build/lib/h1s/setup 2020-08-19T09:33:18,283 copying h1s/bin/hamstr.pl -> build/lib/h1s/bin 2020-08-19T09:33:18,296 copying h1s/bin/translate.pl -> build/lib/h1s/bin 2020-08-19T09:33:18,302 copying h1s/bin/Filehandler.pm -> build/lib/h1s/bin 2020-08-19T09:33:18,307 copying h1s/bin/oneSeq.pl -> build/lib/h1s/bin 2020-08-19T09:33:18,320 copying h1s/bin/run_genewise_hamstr.pm -> build/lib/h1s/bin 2020-08-19T09:33:18,378 installing to build/bdist.linux-armv7l/wheel 2020-08-19T09:33:18,379 running install 2020-08-19T09:33:18,383 running install_lib 2020-08-19T09:33:18,413 creating build/bdist.linux-armv7l 2020-08-19T09:33:18,414 creating build/bdist.linux-armv7l/wheel 2020-08-19T09:33:18,420 creating build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,423 copying build/lib/h1s/__init__.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,429 creating build/bdist.linux-armv7l/wheel/h1s/data 2020-08-19T09:33:18,431 copying build/lib/h1s/data/__init__.py -> build/bdist.linux-armv7l/wheel/h1s/data 2020-08-19T09:33:18,435 copying build/lib/h1s/data/infile.fa -> build/bdist.linux-armv7l/wheel/h1s/data 2020-08-19T09:33:18,439 copying build/lib/h1s/setup1s.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,443 copying build/lib/h1s/runOneseq.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,450 copying build/lib/h1s/remove1s.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,454 copying build/lib/h1s/merge1sOutput.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,459 copying build/lib/h1s/addTaxon1s.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,465 creating build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,467 copying build/lib/h1s/setup/setup.sh -> build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,473 copying build/lib/h1s/setup/__init__.py -> build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,477 copying build/lib/h1s/setup/install_lib.sh -> build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,481 copying build/lib/h1s/setup/indexTaxonomy.pl -> build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,486 copying build/lib/h1s/setup/setup_conda.sh -> build/bdist.linux-armv7l/wheel/h1s/setup 2020-08-19T09:33:18,491 copying build/lib/h1s/checkData1s.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,498 creating build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,500 copying build/lib/h1s/bin/__init__.py -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,504 copying build/lib/h1s/bin/hamstr.pl -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,516 copying build/lib/h1s/bin/translate.pl -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,521 copying build/lib/h1s/bin/Filehandler.pm -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,525 copying build/lib/h1s/bin/oneSeq.pl -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,538 copying build/lib/h1s/bin/run_genewise_hamstr.pm -> build/bdist.linux-armv7l/wheel/h1s/bin 2020-08-19T09:33:18,543 copying build/lib/h1s/addTaxa1s.py -> build/bdist.linux-armv7l/wheel/h1s 2020-08-19T09:33:18,548 running install_egg_info 2020-08-19T09:33:18,597 running egg_info 2020-08-19T09:33:18,598 writing h1s.egg-info/PKG-INFO 2020-08-19T09:33:18,603 writing dependency_links to h1s.egg-info/dependency_links.txt 2020-08-19T09:33:18,607 writing entry points to h1s.egg-info/entry_points.txt 2020-08-19T09:33:18,610 writing requirements to h1s.egg-info/requires.txt 2020-08-19T09:33:18,613 writing top-level names to h1s.egg-info/top_level.txt 2020-08-19T09:33:18,625 reading manifest file 'h1s.egg-info/SOURCES.txt' 2020-08-19T09:33:18,630 reading manifest template 'MANIFEST.in' 2020-08-19T09:33:18,631 warning: no files found matching '*' under directory 'hamstr1s' 2020-08-19T09:33:18,637 writing manifest file 'h1s.egg-info/SOURCES.txt' 2020-08-19T09:33:18,641 Copying h1s.egg-info to build/bdist.linux-armv7l/wheel/h1s-2.1.4-py3.7.egg-info 2020-08-19T09:33:18,670 running install_scripts 2020-08-19T09:33:18,854 creating build/bdist.linux-armv7l/wheel/h1s-2.1.4.dist-info/WHEEL 2020-08-19T09:33:18,859 creating '/tmp/pip-wheel-zia6e7fx/h1s-2.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2020-08-19T09:33:18,865 adding 'h1s/__init__.py' 2020-08-19T09:33:18,868 adding 'h1s/addTaxa1s.py' 2020-08-19T09:33:18,872 adding 'h1s/addTaxon1s.py' 2020-08-19T09:33:18,875 adding 'h1s/checkData1s.py' 2020-08-19T09:33:18,878 adding 'h1s/merge1sOutput.py' 2020-08-19T09:33:18,881 adding 'h1s/remove1s.py' 2020-08-19T09:33:18,886 adding 'h1s/runOneseq.py' 2020-08-19T09:33:18,889 adding 'h1s/setup1s.py' 2020-08-19T09:33:18,893 adding 'h1s/bin/Filehandler.pm' 2020-08-19T09:33:18,895 adding 'h1s/bin/__init__.py' 2020-08-19T09:33:18,915 adding 'h1s/bin/hamstr.pl' 2020-08-19T09:33:18,937 adding 'h1s/bin/oneSeq.pl' 2020-08-19T09:33:18,941 adding 'h1s/bin/run_genewise_hamstr.pm' 2020-08-19T09:33:18,944 adding 'h1s/bin/translate.pl' 2020-08-19T09:33:18,948 adding 'h1s/data/__init__.py' 2020-08-19T09:33:18,950 adding 'h1s/data/infile.fa' 2020-08-19T09:33:18,954 adding 'h1s/setup/__init__.py' 2020-08-19T09:33:18,956 adding 'h1s/setup/indexTaxonomy.pl' 2020-08-19T09:33:18,959 adding 'h1s/setup/install_lib.sh' 2020-08-19T09:33:18,963 adding 'h1s/setup/setup.sh' 2020-08-19T09:33:18,967 adding 'h1s/setup/setup_conda.sh' 2020-08-19T09:33:18,972 adding 'h1s-2.1.4.dist-info/METADATA' 2020-08-19T09:33:18,975 adding 'h1s-2.1.4.dist-info/WHEEL' 2020-08-19T09:33:18,977 adding 'h1s-2.1.4.dist-info/entry_points.txt' 2020-08-19T09:33:18,979 adding 'h1s-2.1.4.dist-info/top_level.txt' 2020-08-19T09:33:18,980 adding 'h1s-2.1.4.dist-info/RECORD' 2020-08-19T09:33:18,990 removing build/bdist.linux-armv7l/wheel 2020-08-19T09:33:19,138 Building wheel for h1s (setup.py): finished with status 'done' 2020-08-19T09:33:19,144 Created wheel for h1s: filename=h1s-2.1.4-py3-none-any.whl size=89803 sha256=6def584cfb1c200b968dd0bfc585bde2c0773555c9e766637e8629abe5b47802 2020-08-19T09:33:19,144 Stored in directory: /tmp/pip-ephem-wheel-cache-upum321u/wheels/cc/bc/85/252721c0458990cd58c463720705b340133436dc7f0f9699b0 2020-08-19T09:33:19,148 Successfully built h1s 2020-08-19T09:33:19,170 Removed build tracker: '/tmp/pip-req-tracker-406nbmvw'