2020-08-20T08:21:52,041 Created temporary directory: /tmp/pip-ephem-wheel-cache-q1uesm9w
2020-08-20T08:21:52,047 Created temporary directory: /tmp/pip-req-tracker-864hcexi
2020-08-20T08:21:52,048 Initialized build tracking at /tmp/pip-req-tracker-864hcexi
2020-08-20T08:21:52,048 Created build tracker: /tmp/pip-req-tracker-864hcexi
2020-08-20T08:21:52,048 Entered build tracker: /tmp/pip-req-tracker-864hcexi
2020-08-20T08:21:52,050 Created temporary directory: /tmp/pip-wheel-u5o_7886
2020-08-20T08:21:52,064 1 location(s) to search for versions of mgatk:
2020-08-20T08:21:52,064 * https://pypi.org/simple/mgatk/
2020-08-20T08:21:52,064 Fetching project page and analyzing links: https://pypi.org/simple/mgatk/
2020-08-20T08:21:52,066 Getting page https://pypi.org/simple/mgatk/
2020-08-20T08:21:52,071 Found index url https://pypi.org/simple
2020-08-20T08:21:52,368   Found link https://files.pythonhosted.org/packages/8f/0c/47da433403828d2e53de436d7689af32d8ee5130dc1c748ce0175d0f2eb1/mgatk-0.0.1.tar.gz#sha256=f0a66229c6057d0cc66db65b33141cd22a3ebc0a4ede501e4887014b5a56643b (from https://pypi.org/simple/mgatk/), version: 0.0.1
2020-08-20T08:21:52,369   Found link https://files.pythonhosted.org/packages/f7/7f/f09842055b19e670fbc309415123b423d30cc0fd1a8c430785bd1754827f/mgatk-0.1.0.tar.gz#sha256=bcfea43a3fb2d22b7c5cbecf59fd3989ef03250f87378b33e889b4054e275166 (from https://pypi.org/simple/mgatk/), version: 0.1.0
2020-08-20T08:21:52,370   Found link https://files.pythonhosted.org/packages/b7/8e/ac9ab509199f852d88097608e3fb60fc85232c87a36a062a041043ea869d/mgatk-0.2.5.tar.gz#sha256=b16329f84786ef87490379db121816b103fe5339ed90fb395e0a9c4ef5028d6e (from https://pypi.org/simple/mgatk/), version: 0.2.5
2020-08-20T08:21:52,371   Found link https://files.pythonhosted.org/packages/74/28/da183d0b56f401dec7f3bded24c50a02396e56c4f995fd50a3cf21c4381d/mgatk-0.5.0.tar.gz#sha256=61ee4d3c18cf696ecfbea6ab5dd9bfebf9791c368a04cfc2d1afcdfe16a6d3ca (from https://pypi.org/simple/mgatk/), version: 0.5.0
2020-08-20T08:21:52,372   Found link https://files.pythonhosted.org/packages/96/e8/e35c039eac8d418ca9213b1db69c4176b59783ca43638a75e824b475197d/mgatk-0.5.1.tar.gz#sha256=518ef6a1d25d9f889a306514eaf1ade02146fce28a43866a60dc6f1dad81b54c (from https://pypi.org/simple/mgatk/), version: 0.5.1
2020-08-20T08:21:52,372   Found link https://files.pythonhosted.org/packages/b6/16/d11afe05a803f23995d04af8fd832473fa1d21f73f242340f6086eb97183/mgatk-0.5.3.tar.gz#sha256=d9b78751af0fe8c31d22508a24ef061d7478c8a2c6283eded971f8802f060f79 (from https://pypi.org/simple/mgatk/), version: 0.5.3
2020-08-20T08:21:52,373   Found link https://files.pythonhosted.org/packages/be/5f/896adc0419fad47b3434866dd68deb7b93a1328916be0eb1f0827393633e/mgatk-0.5.5.tar.gz#sha256=bcc0470b4d01e5cd5d5e67f87720101fc4db889a0c5a4ef35c7d7224989d60a7 (from https://pypi.org/simple/mgatk/), version: 0.5.5
2020-08-20T08:21:52,374   Found link https://files.pythonhosted.org/packages/d0/3d/4a67edbf2648ab25ee6b2361e454638ecd5de6753a0c5f3de21975a7c5bd/mgatk-0.5.6.tar.gz#sha256=9a5f51c87b26221644ab12b675f4334efc1d3339b32065cd5c5ac2b512350ee6 (from https://pypi.org/simple/mgatk/), version: 0.5.6
2020-08-20T08:21:52,375   Found link https://files.pythonhosted.org/packages/64/fa/87883d229672ffb048510fb9eade72ad77fb6ea787e82631311fdf2099c9/mgatk-0.5.7.tar.gz#sha256=f25f3a0553a1d0e3165c509cc570db81ad91406a89738fae14fb3a60787967df (from https://pypi.org/simple/mgatk/), version: 0.5.7
2020-08-20T08:21:52,375   Found link https://files.pythonhosted.org/packages/9e/e3/9ff8a48cac72aaaea4c5c9bdbe71925be6763d6d71ce032905f23c2bc4b6/mgatk-0.5.8.tar.gz#sha256=1933d819307eb79a67cb98980695ebdb3517d5a7842d079b07c9749101ae0e67 (from https://pypi.org/simple/mgatk/), version: 0.5.8
2020-08-20T08:21:52,376   Found link https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 (from https://pypi.org/simple/mgatk/), version: 0.5.9
2020-08-20T08:21:52,388 Given no hashes to check 1 links for project 'mgatk': discarding no candidates
2020-08-20T08:21:52,389 Using version 0.5.9 (newest of versions: 0.5.9)
2020-08-20T08:21:52,397 Collecting mgatk==0.5.9
2020-08-20T08:21:52,402   Created temporary directory: /tmp/pip-unpack-_d2d4c2x
2020-08-20T08:21:53,869   Downloading mgatk-0.5.9.tar.gz (14.3 MB)
2020-08-20T08:21:57,900   Added mgatk==0.5.9 from https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 to build tracker '/tmp/pip-req-tracker-864hcexi'
2020-08-20T08:21:57,902     Running setup.py (path:/tmp/pip-wheel-u5o_7886/mgatk/setup.py) egg_info for package mgatk
2020-08-20T08:21:57,904     Created temporary directory: /tmp/pip-pip-egg-info-fjll3vma
2020-08-20T08:21:57,905     Running command python setup.py egg_info
2020-08-20T08:21:59,731     running egg_info
2020-08-20T08:21:59,738     creating /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info
2020-08-20T08:21:59,740     writing requirements to /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/requires.txt
2020-08-20T08:21:59,742     writing top-level names to /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/top_level.txt
2020-08-20T08:21:59,745     writing /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/PKG-INFO
2020-08-20T08:21:59,749     writing dependency_links to /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/dependency_links.txt
2020-08-20T08:21:59,751     writing entry points to /tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/entry_points.txt
2020-08-20T08:21:59,755     writing manifest file '/tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/SOURCES.txt'
2020-08-20T08:22:00,059     reading manifest file '/tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/SOURCES.txt'
2020-08-20T08:22:00,062     reading manifest template 'MANIFEST.in'
2020-08-20T08:22:00,064     no previously-included directories found matching 'mgatk.egg-info/'
2020-08-20T08:22:00,065     no previously-included directories found matching 'tests/'
2020-08-20T08:22:00,066     no previously-included directories found matching '*.DS_Store'
2020-08-20T08:22:00,125     writing manifest file '/tmp/pip-pip-egg-info-fjll3vma/mgatk.egg-info/SOURCES.txt'
2020-08-20T08:22:00,251   Source in /tmp/pip-wheel-u5o_7886/mgatk has version 0.5.9, which satisfies requirement mgatk==0.5.9 from https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4
2020-08-20T08:22:00,252   Removed mgatk==0.5.9 from https://files.pythonhosted.org/packages/f1/06/47716f2b5fec77a4a48fb5f3722ec27da0ce98d2219cb2eceb113fc72d8b/mgatk-0.5.9.tar.gz#sha256=6c3ba9b8c2b0edaea34e31f4a0b1a88c282a81e5d3823415f1a7c478395233f4 from build tracker '/tmp/pip-req-tracker-864hcexi'
2020-08-20T08:22:00,256 Building wheels for collected packages: mgatk
2020-08-20T08:22:00,262   Created temporary directory: /tmp/pip-wheel-xfwmht3a
2020-08-20T08:22:00,263   Building wheel for mgatk (setup.py): started
2020-08-20T08:22:00,264   Destination directory: /tmp/pip-wheel-xfwmht3a
2020-08-20T08:22:00,264   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-u5o_7886/mgatk/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-u5o_7886/mgatk/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xfwmht3a
2020-08-20T08:22:02,126   running bdist_wheel
2020-08-20T08:22:02,141   running build
2020-08-20T08:22:02,142   running build_py
2020-08-20T08:22:02,448   creating build
2020-08-20T08:22:02,449   creating build/lib
2020-08-20T08:22:02,450   creating build/lib/mgatk
2020-08-20T08:22:02,452   copying mgatk/__init__.py -> build/lib/mgatk
2020-08-20T08:22:02,455   copying mgatk/cli.py -> build/lib/mgatk
2020-08-20T08:22:02,459   copying mgatk/mgatkHelp.py -> build/lib/mgatk
2020-08-20T08:22:02,462   running egg_info
2020-08-20T08:22:02,486   writing mgatk.egg-info/PKG-INFO
2020-08-20T08:22:02,490   writing dependency_links to mgatk.egg-info/dependency_links.txt
2020-08-20T08:22:02,492   writing entry points to mgatk.egg-info/entry_points.txt
2020-08-20T08:22:02,494   writing requirements to mgatk.egg-info/requires.txt
2020-08-20T08:22:02,495   writing top-level names to mgatk.egg-info/top_level.txt
2020-08-20T08:22:02,503   reading manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-20T08:22:02,508   reading manifest template 'MANIFEST.in'
2020-08-20T08:22:02,511   no previously-included directories found matching 'tests/'
2020-08-20T08:22:02,512   no previously-included directories found matching '*.DS_Store'
2020-08-20T08:22:02,571   writing manifest file 'mgatk.egg-info/SOURCES.txt'
2020-08-20T08:22:02,583   copying mgatk/.DS_Store -> build/lib/mgatk
2020-08-20T08:22:02,587   copying mgatk/devnotes.md -> build/lib/mgatk
2020-08-20T08:22:02,591   creating build/lib/mgatk/__pycache__
2020-08-20T08:22:02,592   copying mgatk/__pycache__/__init__.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,596   copying mgatk/__pycache__/__init__.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,599   copying mgatk/__pycache__/cli.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,604   copying mgatk/__pycache__/cli.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,608   copying mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,612   copying mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/lib/mgatk/__pycache__
2020-08-20T08:22:02,618   creating build/lib/mgatk/bin
2020-08-20T08:22:02,620   copying mgatk/bin/.DS_Store -> build/lib/mgatk/bin
2020-08-20T08:22:02,627   copying mgatk/bin/picard.jar -> build/lib/mgatk/bin
2020-08-20T08:22:03,321   creating build/lib/mgatk/bin/R
2020-08-20T08:22:03,323   copying mgatk/bin/R/toRDS.R -> build/lib/mgatk/bin/R
2020-08-20T08:22:03,327   creating build/lib/mgatk/bin/anno
2020-08-20T08:22:03,329   copying mgatk/bin/anno/.DS_Store -> build/lib/mgatk/bin/anno
2020-08-20T08:22:03,333   creating build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,335   copying mgatk/bin/anno/fasta/GRCh37.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,339   copying mgatk/bin/anno/fasta/GRCh38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,346   copying mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,351   copying mgatk/bin/anno/fasta/GRCm38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,358   copying mgatk/bin/anno/fasta/GRCz10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,364   copying mgatk/bin/anno/fasta/NC_012920.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,369   copying mgatk/bin/anno/fasta/hg19.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,373   copying mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,378   copying mgatk/bin/anno/fasta/hg38.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,382   copying mgatk/bin/anno/fasta/mm10.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,387   copying mgatk/bin/anno/fasta/mm9.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,391   copying mgatk/bin/anno/fasta/rCRS.fasta -> build/lib/mgatk/bin/anno/fasta
2020-08-20T08:22:03,396   creating build/lib/mgatk/bin/python
2020-08-20T08:22:03,397   copying mgatk/bin/python/chunk_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,401   copying mgatk/bin/python/filterClipBam.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,405   copying mgatk/bin/python/find_barcodes.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,408   copying mgatk/bin/python/oneSample.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,412   copying mgatk/bin/python/split_barcoded_bam.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,415   copying mgatk/bin/python/sumstatsBP.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,419   copying mgatk/bin/python/sumstatsBPtenx.py -> build/lib/mgatk/bin/python
2020-08-20T08:22:03,423   creating build/lib/mgatk/bin/snake
2020-08-20T08:22:03,424   copying mgatk/bin/snake/Snakefile.Gather -> build/lib/mgatk/bin/snake
2020-08-20T08:22:03,428   copying mgatk/bin/snake/Snakefile.Scatter -> build/lib/mgatk/bin/snake
2020-08-20T08:22:03,434   copying mgatk/bin/snake/Snakefile.tenx -> build/lib/mgatk/bin/snake
2020-08-20T08:22:03,438   creating build/lib/mgatk/del
2020-08-20T08:22:03,440   copying mgatk/del/.DS_Store -> build/lib/mgatk/del
2020-08-20T08:22:03,444   copying mgatk/del/clidel.py -> build/lib/mgatk/del
2020-08-20T08:22:03,448   copying mgatk/del/clifind.py -> build/lib/mgatk/del
2020-08-20T08:22:03,452   creating build/lib/mgatk/del/__pycache__
2020-08-20T08:22:03,453   copying mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-20T08:22:03,458   copying mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/lib/mgatk/del/__pycache__
2020-08-20T08:22:03,462   copying mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/lib/mgatk/del/__pycache__
2020-08-20T08:22:03,465   creating build/lib/mgatk/del/bulk_del
2020-08-20T08:22:03,467   copying mgatk/del/bulk_del/.DS_Store -> build/lib/mgatk/del/bulk_del
2020-08-20T08:22:03,471   copying mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/lib/mgatk/del/bulk_del
2020-08-20T08:22:03,475   creating build/lib/mgatk/del/singles_del
2020-08-20T08:22:03,476   copying mgatk/del/singles_del/01_process_cell_reads.py -> build/lib/mgatk/del/singles_del
2020-08-20T08:22:03,480   copying mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/lib/mgatk/del/singles_del
2020-08-20T08:22:03,484   copying mgatk/del/singles_del/Snakefile.delSingles -> build/lib/mgatk/del/singles_del
2020-08-20T08:22:03,495   installing to build/bdist.linux-armv7l/wheel
2020-08-20T08:22:03,495   running install
2020-08-20T08:22:03,497   running install_lib
2020-08-20T08:22:03,504   creating build/bdist.linux-armv7l
2020-08-20T08:22:03,504   creating build/bdist.linux-armv7l/wheel
2020-08-20T08:22:03,508   creating build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:03,510   creating build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-20T08:22:03,513   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-20T08:22:03,515   creating build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,517   copying build/lib/mgatk/bin/anno/fasta/mm9.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,521   copying build/lib/mgatk/bin/anno/fasta/GRCh37.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,525   copying build/lib/mgatk/bin/anno/fasta/GRCm38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,530   copying build/lib/mgatk/bin/anno/fasta/hg38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,534   copying build/lib/mgatk/bin/anno/fasta/hg19.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,538   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta.fai -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,541   copying build/lib/mgatk/bin/anno/fasta/hg19_chrM.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,545   copying build/lib/mgatk/bin/anno/fasta/GRCh38.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,549   copying build/lib/mgatk/bin/anno/fasta/rCRS.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,553   copying build/lib/mgatk/bin/anno/fasta/NC_012920.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,557   copying build/lib/mgatk/bin/anno/fasta/mm10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,561   copying build/lib/mgatk/bin/anno/fasta/GRCz10.fasta -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno/fasta
2020-08-20T08:22:03,566   copying build/lib/mgatk/bin/anno/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin/anno
2020-08-20T08:22:03,569   copying build/lib/mgatk/bin/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-20T08:22:03,573   copying build/lib/mgatk/bin/picard.jar -> build/bdist.linux-armv7l/wheel/mgatk/bin
2020-08-20T08:22:04,469   creating build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-20T08:22:04,472   copying build/lib/mgatk/bin/snake/Snakefile.Scatter -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-20T08:22:04,475   copying build/lib/mgatk/bin/snake/Snakefile.Gather -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-20T08:22:04,478   copying build/lib/mgatk/bin/snake/Snakefile.tenx -> build/bdist.linux-armv7l/wheel/mgatk/bin/snake
2020-08-20T08:22:04,482   creating build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-20T08:22:04,483   copying build/lib/mgatk/bin/R/toRDS.R -> build/bdist.linux-armv7l/wheel/mgatk/bin/R
2020-08-20T08:22:04,488   creating build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,489   copying build/lib/mgatk/bin/python/find_barcodes.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,494   copying build/lib/mgatk/bin/python/chunk_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,499   copying build/lib/mgatk/bin/python/filterClipBam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,503   copying build/lib/mgatk/bin/python/sumstatsBPtenx.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,508   copying build/lib/mgatk/bin/python/oneSample.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,512   copying build/lib/mgatk/bin/python/sumstatsBP.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,515   copying build/lib/mgatk/bin/python/split_barcoded_bam.py -> build/bdist.linux-armv7l/wheel/mgatk/bin/python
2020-08-20T08:22:04,518   copying build/lib/mgatk/__init__.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:04,521   copying build/lib/mgatk/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:04,525   creating build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-20T08:22:04,527   copying build/lib/mgatk/del/clifind.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-20T08:22:04,531   creating build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-20T08:22:04,533   copying build/lib/mgatk/del/bulk_del/plot_deletion_breaks_bulk.R -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-20T08:22:04,538   copying build/lib/mgatk/del/bulk_del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del/bulk_del
2020-08-20T08:22:04,544   creating build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-20T08:22:04,546   copying build/lib/mgatk/del/singles_del/02_heteroplasmy_del_singles.R -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-20T08:22:04,551   copying build/lib/mgatk/del/singles_del/01_process_cell_reads.py -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-20T08:22:04,554   copying build/lib/mgatk/del/singles_del/Snakefile.delSingles -> build/bdist.linux-armv7l/wheel/mgatk/del/singles_del
2020-08-20T08:22:04,557   copying build/lib/mgatk/del/.DS_Store -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-20T08:22:04,561   copying build/lib/mgatk/del/clidel.py -> build/bdist.linux-armv7l/wheel/mgatk/del
2020-08-20T08:22:04,565   creating build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-20T08:22:04,566   copying build/lib/mgatk/del/__pycache__/clifind.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-20T08:22:04,570   copying build/lib/mgatk/del/__pycache__/clidel.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-20T08:22:04,575   copying build/lib/mgatk/del/__pycache__/clifind.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/del/__pycache__
2020-08-20T08:22:04,579   copying build/lib/mgatk/devnotes.md -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:04,584   copying build/lib/mgatk/cli.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:04,591   copying build/lib/mgatk/mgatkHelp.py -> build/bdist.linux-armv7l/wheel/mgatk
2020-08-20T08:22:04,596   creating build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,597   copying build/lib/mgatk/__pycache__/cli.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,601   copying build/lib/mgatk/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,604   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,608   copying build/lib/mgatk/__pycache__/cli.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,614   copying build/lib/mgatk/__pycache__/mgatkHelp.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,621   copying build/lib/mgatk/__pycache__/__init__.cpython-38.pyc -> build/bdist.linux-armv7l/wheel/mgatk/__pycache__
2020-08-20T08:22:04,627   running install_egg_info
2020-08-20T08:22:04,645   Copying mgatk.egg-info to build/bdist.linux-armv7l/wheel/mgatk-0.5.9-py3.5.egg-info
2020-08-20T08:22:04,669   running install_scripts
2020-08-20T08:22:04,834   creating build/bdist.linux-armv7l/wheel/mgatk-0.5.9.dist-info/WHEEL
2020-08-20T08:22:08,531   Building wheel for mgatk (setup.py): finished with status 'done'
2020-08-20T08:22:08,743   Created wheel for mgatk: filename=mgatk-0.5.9-py2.py3-none-any.whl size=14336988 sha256=7078b4d3d77e2260f01ca68bb7f6707cb4a2c852ed2c7a5e4f7a6c68cc1c50e2
2020-08-20T08:22:08,744   Stored in directory: /tmp/pip-ephem-wheel-cache-q1uesm9w/wheels/5f/71/7f/f0456ab04324c08a85f3615852ebc1a493a48946bff0db2fc9
2020-08-20T08:22:08,748 Successfully built mgatk
2020-08-20T08:22:13,174 Removed build tracker: '/tmp/pip-req-tracker-864hcexi'