2020-08-28T09:15:04,933 Created temporary directory: /tmp/pip-ephem-wheel-cache-0yyrpndy
2020-08-28T09:15:04,940 Created temporary directory: /tmp/pip-req-tracker-fw4wnsty
2020-08-28T09:15:04,941 Initialized build tracking at /tmp/pip-req-tracker-fw4wnsty
2020-08-28T09:15:04,941 Created build tracker: /tmp/pip-req-tracker-fw4wnsty
2020-08-28T09:15:04,941 Entered build tracker: /tmp/pip-req-tracker-fw4wnsty
2020-08-28T09:15:04,943 Created temporary directory: /tmp/pip-wheel-qnqqjjd2
2020-08-28T09:15:04,960 1 location(s) to search for versions of ilus:
2020-08-28T09:15:04,960 * https://pypi.org/simple/ilus/
2020-08-28T09:15:04,961 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2020-08-28T09:15:04,963 Getting page https://pypi.org/simple/ilus/
2020-08-28T09:15:04,968 Found index url https://pypi.org/simple
2020-08-28T09:15:05,292   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2020-08-28T09:15:05,293   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2020-08-28T09:15:05,302 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2020-08-28T09:15:05,304 Using version 1.0.0 (newest of versions: 1.0.0)
2020-08-28T09:15:05,312 Collecting ilus==1.0.0
2020-08-28T09:15:05,318   Created temporary directory: /tmp/pip-unpack-b_764foa
2020-08-28T09:15:05,546   Downloading ilus-1.0.0.tar.gz (12 kB)
2020-08-28T09:15:05,714   Added ilus==1.0.0 from https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced to build tracker '/tmp/pip-req-tracker-fw4wnsty'
2020-08-28T09:15:05,718     Running setup.py (path:/tmp/pip-wheel-qnqqjjd2/ilus/setup.py) egg_info for package ilus
2020-08-28T09:15:05,720     Created temporary directory: /tmp/pip-pip-egg-info-aa2hox2j
2020-08-28T09:15:05,721     Running command python setup.py egg_info
2020-08-28T09:15:08,032     running egg_info
2020-08-28T09:15:08,039     creating /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info
2020-08-28T09:15:08,042     writing entry points to /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/entry_points.txt
2020-08-28T09:15:08,045     writing /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/PKG-INFO
2020-08-28T09:15:08,049     writing top-level names to /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/top_level.txt
2020-08-28T09:15:08,052     writing dependency_links to /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/dependency_links.txt
2020-08-28T09:15:08,054     writing requirements to /tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/requires.txt
2020-08-28T09:15:08,059     writing manifest file '/tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/SOURCES.txt'
2020-08-28T09:15:08,479     reading manifest file '/tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/SOURCES.txt'
2020-08-28T09:15:08,492     writing manifest file '/tmp/pip-pip-egg-info-aa2hox2j/ilus.egg-info/SOURCES.txt'
2020-08-28T09:15:08,662   Source in /tmp/pip-wheel-qnqqjjd2/ilus has version 1.0.0, which satisfies requirement ilus==1.0.0 from https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced
2020-08-28T09:15:08,664   Removed ilus==1.0.0 from https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced from build tracker '/tmp/pip-req-tracker-fw4wnsty'
2020-08-28T09:15:08,670 Building wheels for collected packages: ilus
2020-08-28T09:15:08,680   Created temporary directory: /tmp/pip-wheel-ixb7lhbp
2020-08-28T09:15:08,683   Building wheel for ilus (setup.py): started
2020-08-28T09:15:08,685   Destination directory: /tmp/pip-wheel-ixb7lhbp
2020-08-28T09:15:08,687   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-qnqqjjd2/ilus/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-qnqqjjd2/ilus/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ixb7lhbp
2020-08-28T09:15:11,158   running bdist_wheel
2020-08-28T09:15:11,173   running build
2020-08-28T09:15:11,174   running build_py
2020-08-28T09:15:11,536   creating build
2020-08-28T09:15:11,537   creating build/lib
2020-08-28T09:15:11,538   creating build/lib/ilus
2020-08-28T09:15:11,541   copying ilus/utils.py -> build/lib/ilus
2020-08-28T09:15:11,546   copying ilus/main.py -> build/lib/ilus
2020-08-28T09:15:11,551   copying ilus/__init__.py -> build/lib/ilus
2020-08-28T09:15:11,555   creating build/lib/ilus/pipeline
2020-08-28T09:15:11,557   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2020-08-28T09:15:11,561   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2020-08-28T09:15:11,568   creating build/lib/ilus/modules
2020-08-28T09:15:11,570   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2020-08-28T09:15:11,577   creating build/lib/ilus/launch
2020-08-28T09:15:11,580   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2020-08-28T09:15:11,587   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2020-08-28T09:15:11,592   creating build/lib/ilus/modules/summary
2020-08-28T09:15:11,595   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2020-08-28T09:15:11,600   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2020-08-28T09:15:11,604   creating build/lib/ilus/modules/variants
2020-08-28T09:15:11,606   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2020-08-28T09:15:11,611   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2020-08-28T09:15:11,618   creating build/lib/ilus/modules/vcf
2020-08-28T09:15:11,621   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2020-08-28T09:15:11,635   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2020-08-28T09:15:11,636   creating build/lib/ilus/modules/ngsaligner
2020-08-28T09:15:11,636   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2020-08-28T09:15:11,638   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2020-08-28T09:15:11,641   running egg_info
2020-08-28T09:15:11,669   writing requirements to ilus.egg-info/requires.txt
2020-08-28T09:15:11,673   writing top-level names to ilus.egg-info/top_level.txt
2020-08-28T09:15:11,675   writing dependency_links to ilus.egg-info/dependency_links.txt
2020-08-28T09:15:11,679   writing entry points to ilus.egg-info/entry_points.txt
2020-08-28T09:15:11,680   writing ilus.egg-info/PKG-INFO
2020-08-28T09:15:11,698   reading manifest file 'ilus.egg-info/SOURCES.txt'
2020-08-28T09:15:11,710   writing manifest file 'ilus.egg-info/SOURCES.txt'
2020-08-28T09:15:11,731   installing to build/bdist.linux-armv7l/wheel
2020-08-28T09:15:11,732   running install
2020-08-28T09:15:11,733   running install_lib
2020-08-28T09:15:11,741   creating build/bdist.linux-armv7l
2020-08-28T09:15:11,742   creating build/bdist.linux-armv7l/wheel
2020-08-28T09:15:11,746   creating build/bdist.linux-armv7l/wheel/ilus
2020-08-28T09:15:11,749   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2020-08-28T09:15:11,753   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2020-08-28T09:15:11,760   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2020-08-28T09:15:11,761   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2020-08-28T09:15:11,765   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2020-08-28T09:15:11,772   creating build/bdist.linux-armv7l/wheel/ilus/modules
2020-08-28T09:15:11,782   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2020-08-28T09:15:11,784   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2020-08-28T09:15:11,786   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2020-08-28T09:15:11,792   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2020-08-28T09:15:11,794   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2020-08-28T09:15:11,798   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2020-08-28T09:15:11,805   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2020-08-28T09:15:11,807   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2020-08-28T09:15:11,812   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2020-08-28T09:15:11,816   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2020-08-28T09:15:11,818   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2020-08-28T09:15:11,823   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2020-08-28T09:15:11,826   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2020-08-28T09:15:11,831   creating build/bdist.linux-armv7l/wheel/ilus/launch
2020-08-28T09:15:11,833   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2020-08-28T09:15:11,839   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2020-08-28T09:15:11,843   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2020-08-28T09:15:11,845   running install_egg_info
2020-08-28T09:15:11,871   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.0.0-py3.5.egg-info
2020-08-28T09:15:11,907   running install_scripts
2020-08-28T09:15:12,104   creating build/bdist.linux-armv7l/wheel/ilus-1.0.0.dist-info/WHEEL
2020-08-28T09:15:12,422   Building wheel for ilus (setup.py): finished with status 'done'
2020-08-28T09:15:12,426   Created wheel for ilus: filename=ilus-1.0.0-py3-none-any.whl size=16519 sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275
2020-08-28T09:15:12,427   Stored in directory: /tmp/pip-ephem-wheel-cache-0yyrpndy/wheels/2d/fd/aa/3625345854bdcdb686e0f90c284eca3eacaa97aa9f068ba151
2020-08-28T09:15:12,431 Successfully built ilus
2020-08-28T09:15:12,441 Removed build tracker: '/tmp/pip-req-tracker-fw4wnsty'